FC923476

Overview
NameFC923476
Unique NameFC923476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14474 contig Ccv1_Contig14474:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB1_DROME (Proteasome subunit beta type-1 OS=Drosophila melanogaster GN=Pros26 PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 9.200e-45
Identity = 92/198 (46.46%), Postives = 129/198 (65.15%), Query Frame = 1
Query:  118 QHPAWSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711
            +HP +SPY++NGG+ VAIAG D+ VIAADTR+S+GY+I +R  SK+ KL+ + V+ S+G  AD  +L   +  R   Y+H H + M+   +AQ+LS  +Y +RFFPYY  N+L G+DNEGKG VY+YD +G  E+  Y + G+  TL+ P LDNQ+   +  L  A      L++  AV +    F SA ERDIYTGD
Sbjct:   18 KHPDFSPYESNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLTGSIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEGKGVVYSYDPIGHCEKATYRAGGTAGTLLQPVLDNQIGHKNMNLEDADK--IKLTKERAVSVASDTFISAAERDIYTGD 213          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB1_TRYBB (Proteasome subunit beta type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.681e-38
Identity = 94/206 (45.63%), Postives = 125/206 (60.68%), Query Frame = 1
Query:  115 KQHPA-WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTR-DYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVT----PLSEAEAVDLVKTCFASATERDIYTGD 711
            K HP  WSPY +NGGT  AIAG++Y V+ ADTR++  + I TR D SK+ KL D+  +ASSG QAD   LQ++L  R   YQ+ +  K  S   +A+L S  LY +RFFPYY+FN++ G+D +G G  Y+YD VGS E   Y + GS S+ + P LD         LL  Q  VT     L+  EA+ ++K  F  A ERDI+TGD
Sbjct:   39 KGHPQHWSPYTDNGGTIAAIAGSNYVVLGADTRLNGDFCIHTRSDTSKLFKLTDRIFLASSGMQADRLQLQQMLKYRIQWYQYNNGGKVPSTKAIAKLTSTMLYQRRFFPYYTFNMIVGIDEKGAGVCYSYDPVGSTEPFRYGTCGSASSFVEPLLD--------CLLTRQHMVTQAPADLTMEEALGMLKNAFTGAAERDIFTGD 236          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB1_CAEEL (Proteasome subunit beta type-1 OS=Caenorhabditis elegans GN=pbs-6 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 8.341e-38
Identity = 83/196 (42.35%), Postives = 120/196 (61.22%), Query Frame = 1
Query:  130 WSPYDNNGGTCVAIAGADYCVIAADTRMSTG-YSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK 714
            W+PY   GG+  AI+G ++ ++A+DTRM+    +ILTRD  KI  L D  ++ +SGF  DV  L+K+L +R   Y+  +   MS    A+LLS  LYY+RFFPYY+  +L G+D  GKG V++YD +G  ER+GYS+ G+   +I+PFLD Q+     + L        L+   A+ L+K  F  A ER+I TGDK
Sbjct:   44 WNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQI---GHVTLSEGYERPELTLDRAISLMKDSFRGAAEREISTGDK 236          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB1_YEAST (Proteasome component C5 OS=Saccharomyces cerevisiae GN=PRE7 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.020e-35
Identity = 86/199 (43.22%), Postives = 115/199 (57.79%), Query Frame = 1
Query:  130 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP----LSEAEAVDLVKTCFASATERDIYTGD 711
            ++PY +NGGT + IAG D+ V+A DTR  T YSI +R   K+    D  VM+++GF AD  AL K        Y   HN K++S    A+ + + LY KRFFPYY   ++ GLD +GKG VY++D VGSYER    + G+ ++LIMPFLDNQ+   +         V      LS  E + LV+  F SATER I  GD
Sbjct:   21 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGD 219          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB1_SCHPO (Probable proteasome subunit beta type-1 OS=Schizosaccharomyces pombe GN=pam1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.284e-34
Identity = 79/198 (39.90%), Postives = 111/198 (56.06%), Query Frame = 1
Query:  130 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP----LSEAEAVDLVKTCFASATERDIYTGD 711
            + PY  NGGT VAIAG  + ++A DTR   GY+I TR   ++ ++ D  V+ +SGF+AD  AL K +  R  +Y   H ++MS    A ++   LY KRFFPYY +  + G+D EGKG +Y++D VGSYER    + GS +  I PFLDNQ+   +  +  +          L   EA+ +    F SA ER I  GD
Sbjct:    6 FDPYVQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDPVGSYEREWCRAGGSAANFITPFLDNQVNLHNQYVPGSHGKERKPRRLLKLEEAMKITTDAFTSAGERHIEVGD 203          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB1_ENCCU (Probable proteasome subunit beta type-1 OS=Encephalitozoon cuniculi GN=PRE7 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.131e-25
Identity = 72/194 (37.11%), Postives = 111/194 (57.22%), Query Frame = 1
Query:  130 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711
            + PY++N GT + +   D+ V+A DTR S+   I +R+ SKI ++ D  ++  +GF AD   +   +   + I Q++ +  ++    A LLS  LY KRFFPYYSF VL G + +GK  VY+YD +GS+  V     GSG ++I P LD+ +   +     A++  T LS+ + + LV   F SA ERD+ T D
Sbjct:   83 FDPYEDNSGTTICLKQGDFIVVAGDTRHSSSMVINSREMSKIFQVGD-FLLTGTGFYADTHEVYVKMV--YEIRQYEVDDSINIHSAANLLSKILYSKRFFPYYSFCVLSGFE-KGKPYVYSYDPIGSFGSVTCVCSGSGRSMIQPLLDSFIDKKN--WNNAEE--TQLSQEDCIRLVVKAFNSAAERDVKTKD 268          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.621e-18
Identity = 59/187 (31.55%), Postives = 93/187 (49.73%), Query Frame = 1
Query:  151 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711
            G T V I   D  V+AAD R S G  I  R+ +KI K+ +   +A +G   D+  L +LL A   +Y  Q  K+MS   +A LL+N +   ++FPY ++ ++GG D + K  +Y+ D VG      Y++ GSG       LD++ K               L+  E + L      +A +RD+++GD
Sbjct:   10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDEKPK--LYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKD-------------NLTLEEGIKLAVKAINTAIKRDVFSGD 181          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_SCHPO (Probable proteasome subunit beta type-3 OS=Schizosaccharomyces pombe GN=SPCC63.12c PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.060e-16
Identity = 42/121 (34.71%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  148 NGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 510
            NGG+CVA+AG +   IA+D R+      LT ++ K+  + DK  +  +G   DV+ L +L   +  +Y+ +  +Q+     A L+S+TLY KRF PY+SF V+ G+ N+    +  +D++G
Sbjct:    7 NGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSIG 127          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16
Identity = 54/187 (28.88%), Postives = 92/187 (49.20%), Query Frame = 1
Query:  151 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711
            G T V +   +  V+AADTR S G  I  ++ +KI K+ +   +A +G   D+  L +LL A   +Y+    K+MS   +A LL+N L   ++FPY  + ++GG D + +  +++ D VG      Y++ GSG       LD++ +               +S  + + L       A +RD++TGD
Sbjct:   10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEKPR--LFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYRE-------------EMSVNDGIKLAVKAINVAIKRDVFTGD 181          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.261e-16
Identity = 55/187 (29.41%), Postives = 90/187 (48.13%), Query Frame = 1
Query:  151 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711
            G T V I  +D  V+AAD R S G  +  ++ +KI K+ +   +A +G   D+  L +LL A   +Y  Q  K+MS   +A LL+N L   R  PY ++ ++GG D + +  +Y+ D +G      Y + GSG       LD++ +               L   E + +      SA +RD+++GD
Sbjct:   10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYRE-------------DLKVREGIKIAVEAINSAIKRDVFSGD 181          
The following BLAST results are available for this feature:
BLAST of FC923476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSB1_DROME9.200e-4546.46Proteasome subunit beta type-1 OS=Drosophila melan... [more]
PSB1_TRYBB1.681e-3845.63Proteasome subunit beta type-1 OS=Trypanosoma bruc... [more]
PSB1_CAEEL8.341e-3842.35Proteasome subunit beta type-1 OS=Caenorhabditis e... [more]
PSB1_YEAST1.020e-3543.22Proteasome component C5 OS=Saccharomyces cerevisia... [more]
PSB1_SCHPO4.284e-3439.90Probable proteasome subunit beta type-1 OS=Schizos... [more]
PSB1_ENCCU2.131e-2537.11Probable proteasome subunit beta type-1 OS=Encepha... [more]
PSMB_PYRHO5.621e-1831.55Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSB3_SCHPO1.060e-1634.71Probable proteasome subunit beta type-3 OS=Schizos... [more]
PSMB_PYRFU3.084e-1628.88Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSMB_PYRAB5.261e-1629.41Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]

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Properties
Property NameValue
Genbank descriptionC31705E02EF StrClemenN Citrus clementina cDNA clone C31705E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923476 ID=FC923476; Name=FC923476; organism=Citrus clementina; type=EST; length=715bp
GACAGCTCTCGTTTCTTGTTCTCAAAGCCACTCTTAGATCTAAAACACTG
AAAACGAACCCAAATTCATATTATCCAAATTTCAAACCCTAATTGATCAC
AATTCATCATGACGAAGCAGCATCCTGCATGGTCTCCATACGACAACAAT
GGAGGAACTTGTGTTGCGATTGCTGGAGCTGATTACTGTGTAATCGCTGC
CGACACTCGAATGTCAACCGGTTACAGTATCCTCACTCGCGATTACTCCA
AAATCTGTAAACTGGCAGACAAATGTGTTATGGCCTCTTCTGGTTTTCAA
GCTGATGTGAAAGCCTTACAAAAACTCTTGGCAGCAAGGCACTTGATCTA
TCAGCATCAGCACAACAAGCAAATGAGCTGCCCTGGAATGGCTCAACTAC
TCTCCAACACCCTGTACTACAAGCGTTTCTTTCCTTACTATTCATTTAAT
GTCTTGGGTGGGCTTGACAACGAAGGGAAGGGTTGTGTCTACACATATGA
TGCTGTTGGTTCCTATGAGAGGGTTGGATATAGCTCCCAAGGTTCTGGGT
CCACGCTCATCATGCCATTCCTGGATAACCAACTAAAGTCTCCCAGTCCT
CTCCTACTGCCTGCCCAGGATGCTGTTACTCCTCTTTCAGAGGCTGAAGC
AGTTGATTTGGTCAAAACTTGTTTTGCATCAGCAACTGAGAGAGACATAT
ACACGGGAGACAAAC
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