FC923476

Overview
NameFC923476
Unique NameFC923476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14474 contig Ccv1_Contig14474:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_PICMA (Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 44/129 (34.11%), Postives = 68/129 (52.71%), Query Frame = 1
Query:  133 SPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 519
            S ++ NG   VA+ G +   IA+D R+      +  D+ +I K+ DK  +  SG   DV+ L +  A RH +YQ +  + M     A L+S  LY KRF PY+   V+ GL  + K  + T D++G+ E
Sbjct:    2 SIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKE 130          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_GIALA (Proteasome subunit beta type-3 OS=Giardia lamblia GN=PRSBETA3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 48/192 (25.00%), Postives = 91/192 (47.40%), Query Frame = 1
Query:  139 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILT-RDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYER-VGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 708
            ++ NG   + I G D   +AAD R+   Y  LT  +  +I +L+  C++  +G Q DV    + +  +  +Y  Q ++++     A+++S+ LY  RF PY+   ++ G + +GK  +   D +G  +    +   G+ S  ++   +  +K               +SE E + L++    SAT RD Y+G
Sbjct:    5 WEYNGSALIGIKGXDCVALAADKRLGCSYQTLTIGNEERIFRLSQSCLLGLAGLQTDVLTTYRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGAMDTIGCLDDCTNFQIAGTASDFLLGLCETHVK-------------PDMSEDEILPLMEQIIRSATNRDAYSG 183          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3A_ARATH (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 43/129 (33.33%), Postives = 68/129 (52.71%), Query Frame = 1
Query:  133 SPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 519
            S ++ NG   VA+ G +   IA+D R+      +  D+ +I K+ D+  +  SG   DV+ L + L  RH +YQ +  + M     A L+S  LY KRF PY    V+ GL ++ K  + T D++G+ E
Sbjct:    2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDSIGAKE 130          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 51/188 (27.13%), Postives = 96/188 (51.06%), Query Frame = 1
Query:  151 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711
            G T V +   D  V+A++ R + G+ I ++   K+ ++ D   M ++G   D + L +L++    +Y+ + ++ M+  G+  L+SN L   R++P     ++GG+D  G G +Y+ DA+ GS E    S+ GSGS +    L++Q +               ++  E +DL      +AT+RD  +G+
Sbjct:    9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPG-IYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRE-------------NMTVKEGLDLAIRAIHNATKRDSASGE 182          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_ORYSJ (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.887e-14
Identity = 41/129 (31.78%), Postives = 66/129 (51.16%), Query Frame = 1
Query:  133 SPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 519
            S ++ NG   VA+ G +   IA+D R+      +  D+ ++ K+ DK  +  SG   D + L + L  RH +YQ +  + M     A L+S  LY KRF PY+   V+ GL  + +  + T D +G+ E
Sbjct:    2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMDCIGAKE 130          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3B_ARATH (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14
Identity = 42/129 (32.56%), Postives = 67/129 (51.94%), Query Frame = 1
Query:  133 SPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 519
            S ++ NG   VA+ G +   IA+D R+      +  D+ +I K+ D   +  SG   DV+ L + L  RH +YQ +  + M     A L+S  LY KRF P+    V+ GL ++ K  + T D++G+ E
Sbjct:    2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKE 130          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 56/187 (29.95%), Postives = 87/187 (46.52%), Query Frame = 1
Query:  151 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711
            G T V I   D  V A + R S G  I  +   KI K+ +      +G  AD ++L K L A   +Y+ ++++++S    A L +N L+  RF+P+    +LGG+D  G   +Y+ D  G      + S GSGS +    L+++                 L   EAVD+      SA ERD Y+G+
Sbjct:    9 GTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENG-AKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSD-------------ELYVDEAVDVAIRAIKSAMERDTYSGN 181          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_DICDI (Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 36/107 (33.64%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  148 NGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLD 468
            NGG C+ + G +   IA+D R       ++ D+ K+ ++ DKC +  SG   D + L + L  RH +Y+ +  + MS   ++ LL+N LY KRF PY++  ++ GL+
Sbjct:    7 NGGACIVMVGKNCVAIASDLRFGIQQQTISNDFPKVYRINDKCFVGISGLVTDAQTLYQKLVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRFGPYFTEPLICGLE 113          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 55/189 (29.10%), Postives = 92/189 (48.68%), Query Frame = 1
Query:  151 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP-LSEAEAVDLVKTCFASATERDIYTGD 711
            G T V +   D  V+A + R + G  I ++   KI ++AD+  M ++G   D + L +++     +Y+ +  ++ +   +A L SN L   R+FPY    ++GG+D+EGK  +Y+ D + G+ E     + GSGS      L              +D  TP +   EAV+L      SA +RD  +GD
Sbjct:   11 GTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKS-IYSIDPIGGAIEEKDIVATGSGSLTAYGVL--------------EDRFTPEIGVDEAVELAVRAIYSAMKRDSASGD 184          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_CAEEL (Proteasome subunit beta type-3 OS=Caenorhabditis elegans GN=pbs-3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 38/144 (26.39%), Postives = 76/144 (52.78%), Query Frame = 1
Query:  151 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDN 579
            GGT VA+AG +   IA+D R+    + +  D  K+ K+ DK  +  +GFQ+D + + + +  R  +Y+ + N+ +    +++++SN  Y  RF  Y++  ++ GLD+  K  +   D +G       + + G+G   ++   +N
Sbjct:    8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIGCVSAPRDFVAVGTGQEYLLGVCEN 151          
The following BLAST results are available for this feature:
BLAST of FC923476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSB3_PICMA2.611e-1534.11Proteasome subunit beta type-3 OS=Picea mariana GN... [more]
PSB3_GIALA7.596e-1525.00Proteasome subunit beta type-3 OS=Giardia lamblia ... [more]
PSB3A_ARATH7.596e-1533.33Proteasome subunit beta type-3-A OS=Arabidopsis th... [more]
PSMB_METTE1.296e-1427.13Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PSB3_ORYSJ2.887e-1431.78Proteasome subunit beta type-3 OS=Oryza sativa sub... [more]
PSB3B_ARATH3.770e-1432.56Proteasome subunit beta type-3-B OS=Arabidopsis th... [more]
PSMB_METTH6.431e-1429.95Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSB3_DICDI1.097e-1333.64Proteasome subunit beta type-3 OS=Dictyostelium di... [more]
PSMB_ARCFU2.444e-1329.10Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSB3_CAEEL2.069e-1226.39Proteasome subunit beta type-3 OS=Caenorhabditis e... [more]

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Properties
Property NameValue
Genbank descriptionC31705E02EF StrClemenN Citrus clementina cDNA clone C31705E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923476 ID=FC923476; Name=FC923476; organism=Citrus clementina; type=EST; length=715bp
GACAGCTCTCGTTTCTTGTTCTCAAAGCCACTCTTAGATCTAAAACACTG
AAAACGAACCCAAATTCATATTATCCAAATTTCAAACCCTAATTGATCAC
AATTCATCATGACGAAGCAGCATCCTGCATGGTCTCCATACGACAACAAT
GGAGGAACTTGTGTTGCGATTGCTGGAGCTGATTACTGTGTAATCGCTGC
CGACACTCGAATGTCAACCGGTTACAGTATCCTCACTCGCGATTACTCCA
AAATCTGTAAACTGGCAGACAAATGTGTTATGGCCTCTTCTGGTTTTCAA
GCTGATGTGAAAGCCTTACAAAAACTCTTGGCAGCAAGGCACTTGATCTA
TCAGCATCAGCACAACAAGCAAATGAGCTGCCCTGGAATGGCTCAACTAC
TCTCCAACACCCTGTACTACAAGCGTTTCTTTCCTTACTATTCATTTAAT
GTCTTGGGTGGGCTTGACAACGAAGGGAAGGGTTGTGTCTACACATATGA
TGCTGTTGGTTCCTATGAGAGGGTTGGATATAGCTCCCAAGGTTCTGGGT
CCACGCTCATCATGCCATTCCTGGATAACCAACTAAAGTCTCCCAGTCCT
CTCCTACTGCCTGCCCAGGATGCTGTTACTCCTCTTTCAGAGGCTGAAGC
AGTTGATTTGGTCAAAACTTGTTTTGCATCAGCAACTGAGAGAGACATAT
ACACGGGAGACAAAC
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