FC923476
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_PICMA (Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15 Identity = 44/129 (34.11%), Postives = 68/129 (52.71%), Query Frame = 1 Query: 133 SPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 519 S ++ NG VA+ G + IA+D R+ + D+ +I K+ DK + SG DV+ L + A RH +YQ + + M A L+S LY KRF PY+ V+ GL + K + T D++G+ E Sbjct: 2 SIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKE 130
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_GIALA (Proteasome subunit beta type-3 OS=Giardia lamblia GN=PRSBETA3 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15 Identity = 48/192 (25.00%), Postives = 91/192 (47.40%), Query Frame = 1 Query: 139 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILT-RDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYER-VGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 708 ++ NG + I G D +AAD R+ Y LT + +I +L+ C++ +G Q DV + + + +Y Q ++++ A+++S+ LY RF PY+ ++ G + +GK + D +G + + G+ S ++ + +K +SE E + L++ SAT RD Y+G Sbjct: 5 WEYNGSALIGIKGXDCVALAADKRLGCSYQTLTIGNEERIFRLSQSCLLGLAGLQTDVLTTYRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGAMDTIGCLDDCTNFQIAGTASDFLLGLCETHVK-------------PDMSEDEILPLMEQIIRSATNRDAYSG 183
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3A_ARATH (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15 Identity = 43/129 (33.33%), Postives = 68/129 (52.71%), Query Frame = 1 Query: 133 SPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 519 S ++ NG VA+ G + IA+D R+ + D+ +I K+ D+ + SG DV+ L + L RH +YQ + + M A L+S LY KRF PY V+ GL ++ K + T D++G+ E Sbjct: 2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDSIGAKE 130
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14 Identity = 51/188 (27.13%), Postives = 96/188 (51.06%), Query Frame = 1 Query: 151 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711 G T V + D V+A++ R + G+ I ++ K+ ++ D M ++G D + L +L++ +Y+ + ++ M+ G+ L+SN L R++P ++GG+D G G +Y+ DA+ GS E S+ GSGS + L++Q + ++ E +DL +AT+RD +G+ Sbjct: 9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPG-IYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRE-------------NMTVKEGLDLAIRAIHNATKRDSASGE 182
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_ORYSJ (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.887e-14 Identity = 41/129 (31.78%), Postives = 66/129 (51.16%), Query Frame = 1 Query: 133 SPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 519 S ++ NG VA+ G + IA+D R+ + D+ ++ K+ DK + SG D + L + L RH +YQ + + M A L+S LY KRF PY+ V+ GL + + + T D +G+ E Sbjct: 2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMDCIGAKE 130
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3B_ARATH (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14 Identity = 42/129 (32.56%), Postives = 67/129 (51.94%), Query Frame = 1 Query: 133 SPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 519 S ++ NG VA+ G + IA+D R+ + D+ +I K+ D + SG DV+ L + L RH +YQ + + M A L+S LY KRF P+ V+ GL ++ K + T D++G+ E Sbjct: 2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKE 130
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14 Identity = 56/187 (29.95%), Postives = 87/187 (46.52%), Query Frame = 1 Query: 151 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711 G T V I D V A + R S G I + KI K+ + +G AD ++L K L A +Y+ ++++++S A L +N L+ RF+P+ +LGG+D G +Y+ D G + S GSGS + L+++ L EAVD+ SA ERD Y+G+ Sbjct: 9 GTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENG-AKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSD-------------ELYVDEAVDVAIRAIKSAMERDTYSGN 181
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_DICDI (Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13 Identity = 36/107 (33.64%), Postives = 61/107 (57.01%), Query Frame = 1 Query: 148 NGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLD 468 NGG C+ + G + IA+D R ++ D+ K+ ++ DKC + SG D + L + L RH +Y+ + + MS ++ LL+N LY KRF PY++ ++ GL+ Sbjct: 7 NGGACIVMVGKNCVAIASDLRFGIQQQTISNDFPKVYRINDKCFVGISGLVTDAQTLYQKLVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRFGPYFTEPLICGLE 113
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13 Identity = 55/189 (29.10%), Postives = 92/189 (48.68%), Query Frame = 1 Query: 151 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP-LSEAEAVDLVKTCFASATERDIYTGD 711 G T V + D V+A + R + G I ++ KI ++AD+ M ++G D + L +++ +Y+ + ++ + +A L SN L R+FPY ++GG+D+EGK +Y+ D + G+ E + GSGS L +D TP + EAV+L SA +RD +GD Sbjct: 11 GTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKS-IYSIDPIGGAIEEKDIVATGSGSLTAYGVL--------------EDRFTPEIGVDEAVELAVRAIYSAMKRDSASGD 184
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_CAEEL (Proteasome subunit beta type-3 OS=Caenorhabditis elegans GN=pbs-3 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12 Identity = 38/144 (26.39%), Postives = 76/144 (52.78%), Query Frame = 1 Query: 151 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDN 579 GGT VA+AG + IA+D R+ + + D K+ K+ DK + +GFQ+D + + + + R +Y+ + N+ + +++++SN Y RF Y++ ++ GLD+ K + D +G + + G+G ++ +N Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIGCVSAPRDFVAVGTGQEYLLGVCEN 151 The following BLAST results are available for this feature:
BLAST of FC923476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 37
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923476 ID=FC923476; Name=FC923476; organism=Citrus clementina; type=EST; length=715bpback to top |