FC923476

Overview
NameFC923476
Unique NameFC923476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14474 contig Ccv1_Contig14474:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSMB_SULSO (Proteasome subunit beta OS=Sulfolobus solfataricus GN=psmB PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 52/188 (27.66%), Postives = 91/188 (48.40%), Query Frame = 1
Query:  151 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQ--MSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 708
            G T V I   D  ++AAD R S G+ +  +   K+  + DK  + ++G  AD++ +  +L  +++ + +   K   +S  G+A  L+N L   ++FPY    ++GG D++ +  ++  D +G      Y + GSGS + M  L+++      L              EA DL K    SA +RD +TG
Sbjct:   14 GTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVADLQFIYDVL--KNIYHYNSITKYGPISIKGIATRLANVLSATKYFPYIVQILIGGYDDQPR--LFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTL-------------DEAADLAKRAVFSAIKRDSFTG 184          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 49/188 (26.06%), Postives = 85/188 (45.21%), Query Frame = 1
Query:  151 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSY-ERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711
            G T V +   D  ++A D R S G  +  ++  K+ K+ D   M  +G   D +A+ +LL A   +Y+ +  + +     A LLSN L+  R FP+ +  ++GG D      +++ D +G   E   +++ GSGS +    L+                   +S  E + L      SA ERD ++G+
Sbjct:    6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYD-------------RDMSVEEGIKLALNALKSAMERDTFSGN 180          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_RAT (Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 38/122 (31.15%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  148 NGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG-KGCVYTYDAVG 510
            NGG  +A+ G +   IAAD R      ++T D+ KI  + D+  +  +G   DV+ + + L  R  +Y+ +  +Q+    +  +++N LY KRF PYY+  V+ GLD +  K  + + D +G
Sbjct:    7 NGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIG 128          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_MOUSE (Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 38/122 (31.15%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  148 NGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG-KGCVYTYDAVG 510
            NGG  +A+ G +   IAAD R      ++T D+ KI  + D+  +  +G   DV+ + + L  R  +Y+ +  +Q+    +  +++N LY KRF PYY+  V+ GLD +  K  + + D +G
Sbjct:    7 NGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIG 128          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_HUMAN (Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 38/122 (31.15%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  148 NGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG-KGCVYTYDAVG 510
            NGG  +A+ G +   IAAD R      ++T D+ KI  + D+  +  +G   DV+ + + L  R  +Y+ +  +Q+    +  +++N LY KRF PYY+  V+ GLD +  K  + + D +G
Sbjct:    7 NGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIG 128          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_BOVIN (Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 38/122 (31.15%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  148 NGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG-KGCVYTYDAVG 510
            NGG  +A+ G +   IAAD R      ++T D+ KI  + D+  +  +G   DV+ + + L  R  +Y+ +  +Q+    +  +++N LY KRF PYY+  V+ GLD +  K  + + D +G
Sbjct:    7 NGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIG 128          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_ONCMY (Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 35/107 (32.71%), Postives = 56/107 (52.34%), Query Frame = 1
Query:  148 NGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLD 468
            NGG  +A+ G     IAAD R      ++T D+ KI  + D+  +  +G   DV+ + + L  R  +Y+ +  +Q+       ++SN LY +RF PYY   V+ GLD
Sbjct:    7 NGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLD 113          
The following BLAST results are available for this feature:
BLAST of FC923476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSMB_SULSO3.529e-1227.66Proteasome subunit beta OS=Sulfolobus solfataricus... [more]
PSMB_METJA2.287e-1126.06Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PSB3_RAT2.987e-1131.15Proteasome subunit beta type-3 OS=Rattus norvegicu... [more]
PSB3_MOUSE2.987e-1131.15Proteasome subunit beta type-3 OS=Mus musculus GN=... [more]
PSB3_HUMAN2.987e-1131.15Proteasome subunit beta type-3 OS=Homo sapiens GN=... [more]
PSB3_BOVIN2.987e-1131.15Proteasome subunit beta type-3 OS=Bos taurus GN=PS... [more]
PSB3_ONCMY6.655e-1132.71Proteasome subunit beta type-3 OS=Oncorhynchus myk... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31705E02EF StrClemenN Citrus clementina cDNA clone C31705E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923476 ID=FC923476; Name=FC923476; organism=Citrus clementina; type=EST; length=715bp
GACAGCTCTCGTTTCTTGTTCTCAAAGCCACTCTTAGATCTAAAACACTG
AAAACGAACCCAAATTCATATTATCCAAATTTCAAACCCTAATTGATCAC
AATTCATCATGACGAAGCAGCATCCTGCATGGTCTCCATACGACAACAAT
GGAGGAACTTGTGTTGCGATTGCTGGAGCTGATTACTGTGTAATCGCTGC
CGACACTCGAATGTCAACCGGTTACAGTATCCTCACTCGCGATTACTCCA
AAATCTGTAAACTGGCAGACAAATGTGTTATGGCCTCTTCTGGTTTTCAA
GCTGATGTGAAAGCCTTACAAAAACTCTTGGCAGCAAGGCACTTGATCTA
TCAGCATCAGCACAACAAGCAAATGAGCTGCCCTGGAATGGCTCAACTAC
TCTCCAACACCCTGTACTACAAGCGTTTCTTTCCTTACTATTCATTTAAT
GTCTTGGGTGGGCTTGACAACGAAGGGAAGGGTTGTGTCTACACATATGA
TGCTGTTGGTTCCTATGAGAGGGTTGGATATAGCTCCCAAGGTTCTGGGT
CCACGCTCATCATGCCATTCCTGGATAACCAACTAAAGTCTCCCAGTCCT
CTCCTACTGCCTGCCCAGGATGCTGTTACTCCTCTTTCAGAGGCTGAAGC
AGTTGATTTGGTCAAAACTTGTTTTGCATCAGCAACTGAGAGAGACATAT
ACACGGGAGACAAAC
back to top