FC923476
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSMB_SULSO (Proteasome subunit beta OS=Sulfolobus solfataricus GN=psmB PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12 Identity = 52/188 (27.66%), Postives = 91/188 (48.40%), Query Frame = 1 Query: 151 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQ--MSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 708 G T V I D ++AAD R S G+ + + K+ + DK + ++G AD++ + +L +++ + + K +S G+A L+N L ++FPY ++GG D++ + ++ D +G Y + GSGS + M L+++ L EA DL K SA +RD +TG Sbjct: 14 GTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVADLQFIYDVL--KNIYHYNSITKYGPISIKGIATRLANVLSATKYFPYIVQILIGGYDDQPR--LFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTL-------------DEAADLAKRAVFSAIKRDSFTG 184
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11 Identity = 49/188 (26.06%), Postives = 85/188 (45.21%), Query Frame = 1 Query: 151 GGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSY-ERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711 G T V + D ++A D R S G + ++ K+ K+ D M +G D +A+ +LL A +Y+ + + + A LLSN L+ R FP+ + ++GG D +++ D +G E +++ GSGS + L+ +S E + L SA ERD ++G+ Sbjct: 6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYD-------------RDMSVEEGIKLALNALKSAMERDTFSGN 180
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_RAT (Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11 Identity = 38/122 (31.15%), Postives = 66/122 (54.10%), Query Frame = 1 Query: 148 NGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG-KGCVYTYDAVG 510 NGG +A+ G + IAAD R ++T D+ KI + D+ + +G DV+ + + L R +Y+ + +Q+ + +++N LY KRF PYY+ V+ GLD + K + + D +G Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIG 128
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_MOUSE (Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11 Identity = 38/122 (31.15%), Postives = 66/122 (54.10%), Query Frame = 1 Query: 148 NGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG-KGCVYTYDAVG 510 NGG +A+ G + IAAD R ++T D+ KI + D+ + +G DV+ + + L R +Y+ + +Q+ + +++N LY KRF PYY+ V+ GLD + K + + D +G Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIG 128
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_HUMAN (Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11 Identity = 38/122 (31.15%), Postives = 66/122 (54.10%), Query Frame = 1 Query: 148 NGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG-KGCVYTYDAVG 510 NGG +A+ G + IAAD R ++T D+ KI + D+ + +G DV+ + + L R +Y+ + +Q+ + +++N LY KRF PYY+ V+ GLD + K + + D +G Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIG 128
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_BOVIN (Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3) HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11 Identity = 38/122 (31.15%), Postives = 66/122 (54.10%), Query Frame = 1 Query: 148 NGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG-KGCVYTYDAVG 510 NGG +A+ G + IAAD R ++T D+ KI + D+ + +G DV+ + + L R +Y+ + +Q+ + +++N LY KRF PYY+ V+ GLD + K + + D +G Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIG 128
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB3_ONCMY (Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11 Identity = 35/107 (32.71%), Postives = 56/107 (52.34%), Query Frame = 1 Query: 148 NGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLD 468 NGG +A+ G IAAD R ++T D+ KI + D+ + +G DV+ + + L R +Y+ + +Q+ ++SN LY +RF PYY V+ GLD Sbjct: 7 NGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLD 113 The following BLAST results are available for this feature:
BLAST of FC923476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 37
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923476 ID=FC923476; Name=FC923476; organism=Citrus clementina; type=EST; length=715bpback to top |