FC923483

Overview
NameFC923483
Unique NameFC923483
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPAB5_YEAST (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Saccharomyces cerevisiae GN=RPB10 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   40 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD 246
            MI+PVRCF+CGKV+G+KW++YL+LLQ D   EG AL  LGL RYCCRRM++THVDLIEK L YN L+K D
Sbjct:    1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKFLRYNPLEKRD 70          
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPAB5_ASHGO (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Ashbya gossypii GN=RPB10 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 1
Query:   40 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD 246
            MI+PVRCF+CGKV+G+KW+ YL++LQ +   EG AL  LGL RYCCRRM++THVDLIEK L YN L+K D
Sbjct:    1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELDEGTALSRLGLKRYCCRRMILTHVDLIEKFLRYNPLEKRD 70          
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPAB5_ENCCU (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Encephalitozoon cuniculi GN=RPB10 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = 1
Query:   40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN 228
            MIIP+RCFTCGK I +KW+ Y +LL+ D  + +ALD LG+ R CCRRM + HVD+++KLL ++
Sbjct:    1 MIIPIRCFTCGKEISSKWEPYQELLKIDKGKAEALDELGMRRICCRRMFLGHVDIVDKLLKFD 63          
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPON_SULTO (DNA-directed RNA polymerase subunit N OS=Sulfolobus tokodaii GN=rpoN PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225
            MIIP+RCFTCG +IG+KW+ ++  +      G  LD LG+ RYCCRRML++HVD+I+++++Y
Sbjct:    1 MIIPIRCFTCGSLIGDKWEPFITRVSNGEDPGKVLDDLGVKRYCCRRMLLSHVDIIKEVIHY 62          
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPON_METKA (DNA-directed RNA polymerase subunit N OS=Methanopyrus kandleri GN=rpoN PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = 1
Query:   40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPE-GDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225
            MIIP+RCFTCG+ I + W+ Y++L++ +  E G+ALD LG+ RYCCRRM ++HVDL+E+ L Y
Sbjct:    1 MIIPIRCFTCGRPIAHLWEKYVELIEEEGMEPGEALDELGVDRYCCRRMFLSHVDLLEESLPY 63          
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPON_SULSO (DNA-directed RNA polymerase subunit N OS=Sulfolobus solfataricus GN=rpoN PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 31/62 (50.00%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225
            M+IP+RCFTCG +I +KW +++  + A    G  LD LG+ RYCCRRML++HVD+I ++++Y
Sbjct:    1 MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVIHY 62          
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPON_SULIY (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpoN PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225
            M+IP+RCFTCG +I +KW  ++  + A    G  LD LG+ RYCCRRML++H+D+I ++++Y
Sbjct:    1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62          
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPON_SULIN (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpoN PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225
            M+IP+RCFTCG +I +KW  ++  + A    G  LD LG+ RYCCRRML++H+D+I ++++Y
Sbjct:    1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62          
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPON_SULIM (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpoN PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225
            M+IP+RCFTCG +I +KW  ++  + A    G  LD LG+ RYCCRRML++H+D+I ++++Y
Sbjct:    1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62          
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPON_SULIL (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpoN PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225
            M+IP+RCFTCG +I +KW  ++  + A    G  LD LG+ RYCCRRML++H+D+I ++++Y
Sbjct:    1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62          
The following BLAST results are available for this feature:
BLAST of FC923483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RPAB5_YEAST1.668e-2268.57DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_ASHGO1.081e-2165.71DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_ENCCU3.980e-1655.56DNA-directed RNA polymerases I, II, and III subuni... [more]
RPON_SULTO5.747e-1551.61DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_METKA5.747e-1555.56DNA-directed RNA polymerase subunit N OS=Methanopy... [more]
RPON_SULSO1.672e-1450.00DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_SULIY4.865e-1448.39DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_SULIN4.865e-1448.39DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_SULIM4.865e-1448.39DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_SULIL4.865e-1448.39DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]

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Properties
Property NameValue
Genbank descriptionC31705E09EF StrClemenN Citrus clementina cDNA clone C31705E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923483 ID=FC923483; Name=FC923483; organism=Citrus clementina; type=EST; length=707bp
AGGGAGAAAGAGGCGACTCGAGCGTAAGACTCAAGGAAGATGATAATCCC
AGTTCGTTGCTTCACTTGCGGCAAGGTCATCGGAAACAAATGGGACACCT
ATCTTGATCTTCTACAGGCTGATTATCCTGAAGGAGACGCACTTGATGCC
TTGGGGTTGGTCCGCTATTGCTGTAGGCGAATGCTTATGACTCACGTTGA
CCTCATTGAAAAGCTTCTTAACTACAACACATTGGATAAGTCTGACACCA
GCTGAGGAAGCCCATGGATGGACCTGAAGTTGGTTTGTTCATGTTGCCTG
TTGCATCTGCATGTCAACTTCCATATTGTAATGTCTCTGTGAGCACTTGC
CGTTATGTTTAGTATTGAGGAATATTAGGCATCAAATGCATTAAAGACTT
AACTCTTACCCAAGTCATGGATAATTTTGGGGGGGTGTGTGTGTGTCATA
GTTTGTTATATGTAATGAACCTAAATTGGCAGCTGCGTTTCAAGTGCTTG
AGATTGTTTTAGTTGTTTGAATTTGTTTTCCTTGGTAGATATGGTCGTAT
CGTTAACTGAGTTGGTATTCGTCATGGTAACTTATTTACTCATTCGTGAG
GCCAATCCGATAGTATGAGGGATTTGTAGTTGTTTTTGACTAAAGCGTAC
ATAGGGCNTAAAGGTTTTGCTTAAGCAGGTACAGAATGAAAGAGTGACTA
TTTTGTT
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