FC923553

Overview
NameFC923553
Unique NameFC923553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_CHLRE (Ubiquitin-related modifier 1 homolog OS=Chlamydomonas reinhardtii GN=URM1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.304e-21
Identity = 45/81 (55.56%), Postives = 64/81 (79.01%), Query Frame = 2
Query:  182 KVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            K H+VDV P +  ++L    L++W   N+++ERPE+F+KG +VRPG+LVL+N+CDWELSG  ++T+ + DVVVFISTLHGG
Sbjct:   20 KQHDVDV-PVQEGKQLTAGHLIAWTRDNMLRERPELFVKGHTVRPGILVLINECDWELSGATESTISDGDVVVFISTLHGG 99          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_DROYA (Ubiquitin-related modifier 1 homolog OS=Drosophila yakuba GN=GE20399 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.872e-19
Identity = 40/70 (57.14%), Postives = 56/70 (80.00%), Query Frame = 2
Query:  215 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            G++K  + +LL W+  N++ ERPE+F++GD+VRPG+LVL+ND DWEL G+LD  L+  D V+FISTLHGG
Sbjct:   32 GNQKWTIANLLKWMHANILTERPELFLQGDTVRPGILVLINDTDWELLGELDYELQPNDNVLFISTLHGG 101          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_DROER (Ubiquitin-related modifier 1 homolog OS=Drosophila erecta GN=GG14947 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 6.872e-19
Identity = 40/70 (57.14%), Postives = 56/70 (80.00%), Query Frame = 2
Query:  215 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            G++K  + +LL W+  N++ ERPE+F++GD+VRPG+LVL+ND DWEL G+LD  L+  D V+FISTLHGG
Sbjct:   32 GNQKWTIANLLKWMHANILTERPELFLQGDTVRPGILVLINDTDWELLGELDYELQPNDNVLFISTLHGG 101          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_DROME (Ubiquitin-related modifier 1 homolog OS=Drosophila melanogaster GN=CG33276 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 8.975e-19
Identity = 40/70 (57.14%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  215 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            G +K  + +LL W+  N++ ERPE+F++GD+VRPG+LVL+ND DWEL G+LD  L+  D V+FISTLHGG
Sbjct:   32 GKQKWTIANLLKWMHANILTERPELFLQGDTVRPGILVLINDTDWELLGELDYELQPNDNVLFISTLHGG 101          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_DROPS (Ubiquitin-related modifier 1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA23607 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.531e-18
Identity = 40/70 (57.14%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  215 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            G +K  + +LL W+  N++ ERPE+F++GD+VRPG+LVL+ND DWEL G+LD  L+  D V+FISTLHGG
Sbjct:   30 GHKKWTIANLLKWMHANILTERPELFLQGDTVRPGILVLINDTDWELLGELDYELQANDNVLFISTLHGG 99          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_DROPE (Ubiquitin-related modifier 1 homolog OS=Drosophila persimilis GN=GL24132 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.531e-18
Identity = 40/70 (57.14%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  215 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            G +K  + +LL W+  N++ ERPE+F++GD+VRPG+LVL+ND DWEL G+LD  L+  D V+FISTLHGG
Sbjct:   30 GHKKWTIANLLKWMHANILTERPELFLQGDTVRPGILVLINDTDWELLGELDYELQANDNVLFISTLHGG 99          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_DROAN (Ubiquitin-related modifier 1 homolog OS=Drosophila ananassae GN=GF23776 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.531e-18
Identity = 40/70 (57.14%), Postives = 56/70 (80.00%), Query Frame = 2
Query:  215 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            G++K  + +LL W+  N++ ERPE+F++GD+VRPG+LVL+ND DWEL G+LD  L+  D V+FISTLHGG
Sbjct:   32 GTKKWNIANLLKWMHANILTERPELFLQGDTVRPGILVLINDTDWELLGELDYELQPNDNVLFISTLHGG 101          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_DROMO (Ubiquitin-related modifier 1 homolog OS=Drosophila mojavensis GN=GI12450 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.411e-18
Identity = 39/70 (55.71%), Postives = 56/70 (80.00%), Query Frame = 2
Query:  215 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            G++K  + +LL W+  N++ ERPE+F++GD+VRPG+LVL+ND DWEL G+L+  L+  D V+FISTLHGG
Sbjct:   35 GTQKWTIANLLKWMHANILTERPELFIQGDTVRPGILVLINDTDWELLGELEYELKANDNVLFISTLHGG 104          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_DROSI (Ubiquitin-related modifier 1 homolog OS=Drosophila simulans GN=GD13043 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.454e-18
Identity = 39/70 (55.71%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  215 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            G++K  + +LL W+  N++ ERPE+F++ D+VRPG+LVL+ND DWEL G+LD  L+  D V+FISTLHGG
Sbjct:   32 GNQKWTISNLLKWMHANILTERPELFLQEDTVRPGILVLINDTDWELLGELDYELQPNDNVLFISTLHGG 101          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_DROSE (Ubiquitin-related modifier 1 homolog OS=Drosophila sechellia GN=GM13742 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.818e-18
Identity = 39/70 (55.71%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  215 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            G++K  + +LL W+  N++ ERPE+F++ D+VRPG+LVL+ND DWEL G+LD  L+  D V+FISTLHGG
Sbjct:   32 GNQKWTIANLLKWMHANILTERPELFLQEDTVRPGILVLINDTDWELLGELDYELQPNDNVLFISTLHGG 101          
The following BLAST results are available for this feature:
BLAST of FC923553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
URM1_CHLRE4.304e-2155.56Ubiquitin-related modifier 1 homolog OS=Chlamydomo... [more]
URM1_DROYA6.872e-1957.14Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROER6.872e-1957.14Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROME8.975e-1957.14Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROPS1.531e-1857.14Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROPE1.531e-1857.14Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROAN1.531e-1857.14Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROMO3.411e-1855.71Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROSI4.454e-1855.71Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROSE5.818e-1855.71Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31706D07EF StrClemenN Citrus clementina cDNA clone C31706D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923553 ID=FC923553; Name=FC923553; organism=Citrus clementina; type=EST; length=555bp
GGCATGCGAAATTTTATTGAGAACAAGCAAAGGGCTATTATTGTTTTCGT
CAAGTTAACACAACGTTCTCACATCTCTGTTCTTCTAGGGTTTTGCAAAT
TTCTGAAATTTCTGCAAATCTTGAACCATGCAACTGACTCTAGAATTCGG
TGGAGGGTTAGAGCTTCTTTGTGATTCGGTAAAGGTCCATAATGTCGATG
TTGTTCCACCAAAAGGATCAGAGAAGTTGATTATGAAAGATTTGCTTTCT
TGGGTCGGCACCAATTTGATCAAGGAGAGGCCTGAAATGTTCATGAAAGG
AGATTCTGTGAGACCTGGTGTTCTAGTACTTGTGAATGATTGTGACTGGG
AGCTCAGTGGGCAGCTGGATACCACACTGGAGGAAAAGGATGTGGTTGTT
TTTATTTCAACTTTACACGGCGGGTGATAAGCTAAATTATTGTAATTTCT
TAGATGATAAGCACTTGTTATTGAAAATTGGTTGTACCCTTGTCTGGGTA
TTGAGTATGCTTGTTGAAGCATGTGGAATGAGATGAAGATGTTGAATGTT
TACAA
back to top