FC923553

Overview
NameFC923553
Unique NameFC923553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_BOMMO (Ubiquitin-related modifier 1 homolog OS=Bombyx mori PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.296e-17
Identity = 40/74 (54.05%), Postives = 56/74 (75.68%), Query Frame = 2
Query:  203 VPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            +P   ++   +K+LL W+  NL+ ER E+F+K DSVRPG+LVL+N+ DWEL GQL+  L+E D ++FISTLHGG
Sbjct:   36 LPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHGG 109          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_DROWI (Ubiquitin-related modifier 1 homolog OS=Drosophila willistoni GN=GK16796 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.693e-17
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 2
Query:  215 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            GS+K  +  LL W+  N++   PE+F++GD+VRPG+LVLVND DWEL G LD  L++ D ++FISTLHGG
Sbjct:   31 GSQKWTIGSLLKWMHANILTRSPELFIQGDTVRPGILVLVNDTDWELLGGLDYELQQNDNILFISTLHGG 100          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_DROGR (Ubiquitin-related modifier 1 homolog OS=Drosophila grimshawi GN=GH16604 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.693e-17
Identity = 38/70 (54.29%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  215 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            G++K  + +LL W+  N++ ER E+F++GD+VRPG+LVL+ND DWEL G+L+  L+  D V+FISTLHGG
Sbjct:   35 GAQKWTIAELLKWMHANILTERAELFIQGDTVRPGILVLINDTDWELLGELEYELQPNDNVLFISTLHGG 104          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_DICDI (Ubiquitin-related modifier 1 homolog OS=Dictyostelium discoideum GN=urm1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.693e-17
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  173 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            D  KVH ++        ++ +KDL+ ++  NL+KER E+F+  D+VRPG+LVL+ND DWEL G +   +E+KD ++FISTLHGG
Sbjct:   16 DKKKVHEIEF---SDKNEIPLKDLILYMRDNLLKERSELFVVDDTVRPGILVLINDADWELFGGISYNVEDKDTIIFISTLHGG 96          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_DROVI (Ubiquitin-related modifier 1 homolog OS=Drosophila virilis GN=GJ12350 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.211e-17
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 2
Query:  215 GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            G +K  + +LL W+  N++ ERPE+F++  +VRPG+LVL+ND DWEL G+LD  L++ D V+FISTLHGG
Sbjct:   30 GDQKWTIANLLKWMHANILTERPELFIQESTVRPGILVLINDTDWELLGELDYELQQNDNVLFISTLHGG 99          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_AEDAE (Ubiquitin-related modifier 1 homolog OS=Aedes aegypti GN=AAEL008680 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.069e-15
Identity = 37/82 (45.12%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  179 VKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            VK H   VVP  GS+ ++++++L W+  NL+   P +F++ ++VRPG+LV++ND DW+L G+ D  L+  D ++FISTLHGG
Sbjct:   31 VKEH---VVPLDGSKIVLLEEMLRWLRDNLLTGDPNLFLQENTVRPGILVMINDTDWDLMGETDYILQPGDHILFISTLHGG 109          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_CULQU (Ubiquitin-related modifier 1 homolog OS=Culex quinquefasciatus GN=CPIJ002088 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.863e-15
Identity = 34/75 (45.33%), Postives = 56/75 (74.67%), Query Frame = 2
Query:  200 VVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            VVP  GS+ ++++++L W+  NL+     +FM+ ++VRPG+LV++ND DW+L G++D  L+  D ++FISTLHGG
Sbjct:   35 VVPLDGSKIVLLEEMLRWLRDNLLTGDAGLFMQENTVRPGILVMINDTDWDLMGEIDYILQPGDHILFISTLHGG 109          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_KLULA (Ubiquitin-related modifier 1 OS=Kluyveromyces lactis GN=URM1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  215 GSEKLIMKDLLSWVGTNLIKERPEM--FMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            G +++ + DL+ W+  NLI+   ++  F++ DS+RPG+L L+ND DWEL G+ +  LE+ DVV F STLHGG
Sbjct:   30 GKDEINVGDLIQWIVDNLIEHEGDVNVFLENDSIRPGILTLINDTDWELEGEKEYVLEDGDVVSFTSTLHGG 101          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_ANOGA (Ubiquitin-related modifier 1 homolog OS=Anopheles gambiae GN=AGAP005823 PE=3 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 4.314e-13
Identity = 33/82 (40.24%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  179 VKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            VK H   +VP  GS+ ++++++L W+  +L+     +F++ ++VRPG+LV++ND DW+L G+ +  L+  D ++FISTLHGG
Sbjct:   31 VKEH---IVPLDGSKIVLLEEMLRWLRDHLLTGDAGLFLQENTVRPGILVMINDTDWDLMGETEYILQPGDHILFISTLHGG 109          
BLAST of FC923553 vs. ExPASy Swiss-Prot
Match: URM1_COPC7 (Ubiquitin-related modifier 1 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=URM1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.635e-13
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 2
Query:  206 PPKGSEKLIMKD---LLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            PP   + L   D   L+  +  +L++ER E+F++  +VRPG+LVLVND DWEL G+ D  L++ D VVFISTLHGG
Sbjct:   49 PPPKDDLLKPADITYLIHHMRDHLLQEREELFVENGTVRPGILVLVNDTDWELEGEGDYVLKDGDEVVFISTLHGG 124          
The following BLAST results are available for this feature:
BLAST of FC923553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
URM1_BOMMO1.296e-1754.05Ubiquitin-related modifier 1 homolog OS=Bombyx mor... [more]
URM1_DROWI1.693e-1755.71Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DROGR1.693e-1754.29Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_DICDI1.693e-1747.62Ubiquitin-related modifier 1 homolog OS=Dictyostel... [more]
URM1_DROVI2.211e-1754.29Ubiquitin-related modifier 1 homolog OS=Drosophila... [more]
URM1_AEDAE2.069e-1545.12Ubiquitin-related modifier 1 homolog OS=Aedes aegy... [more]
URM1_CULQU7.863e-1545.33Ubiquitin-related modifier 1 homolog OS=Culex quin... [more]
URM1_KLULA6.656e-1447.22Ubiquitin-related modifier 1 OS=Kluyveromyces lact... [more]
URM1_ANOGA4.314e-1340.24Ubiquitin-related modifier 1 homolog OS=Anopheles ... [more]
URM1_COPC75.635e-1350.00Ubiquitin-related modifier 1 OS=Coprinopsis cinere... [more]

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Properties
Property NameValue
Genbank descriptionC31706D07EF StrClemenN Citrus clementina cDNA clone C31706D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923553 ID=FC923553; Name=FC923553; organism=Citrus clementina; type=EST; length=555bp
GGCATGCGAAATTTTATTGAGAACAAGCAAAGGGCTATTATTGTTTTCGT
CAAGTTAACACAACGTTCTCACATCTCTGTTCTTCTAGGGTTTTGCAAAT
TTCTGAAATTTCTGCAAATCTTGAACCATGCAACTGACTCTAGAATTCGG
TGGAGGGTTAGAGCTTCTTTGTGATTCGGTAAAGGTCCATAATGTCGATG
TTGTTCCACCAAAAGGATCAGAGAAGTTGATTATGAAAGATTTGCTTTCT
TGGGTCGGCACCAATTTGATCAAGGAGAGGCCTGAAATGTTCATGAAAGG
AGATTCTGTGAGACCTGGTGTTCTAGTACTTGTGAATGATTGTGACTGGG
AGCTCAGTGGGCAGCTGGATACCACACTGGAGGAAAAGGATGTGGTTGTT
TTTATTTCAACTTTACACGGCGGGTGATAAGCTAAATTATTGTAATTTCT
TAGATGATAAGCACTTGTTATTGAAAATTGGTTGTACCCTTGTCTGGGTA
TTGAGTATGCTTGTTGAAGCATGTGGAATGAGATGAAGATGTTGAATGTT
TACAA
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