FC923592

Overview
NameFC923592
Unique NameFC923592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB1_BURMA (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia mallei GN=nuoB1 PE=3 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 5.367e-50
Identity = 89/124 (71.77%), Postives = 101/124 (81.45%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPP
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPP 134
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB1_BURM9 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia mallei (strain NCTC 10229) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.367e-50
Identity = 89/124 (71.77%), Postives = 101/124 (81.45%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPP
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPP 134
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB1_BURM7 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia mallei (strain NCTC 10247) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.367e-50
Identity = 89/124 (71.77%), Postives = 101/124 (81.45%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPP
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPP 134
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB_XYLFT (NADH-quinone oxidoreductase subunit B OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=nuoB PE=3 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 7.009e-50
Identity = 89/124 (71.77%), Postives = 102/124 (82.26%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+GI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVD+YVPGCPP
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPP 160
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB_XYLFM (NADH-quinone oxidoreductase subunit B OS=Xylella fastidiosa (strain M12) GN=nuoB PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.009e-50
Identity = 89/124 (71.77%), Postives = 102/124 (82.26%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+GI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVD+YVPGCPP
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPP 160
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB_XYLFA (NADH-quinone oxidoreductase subunit B OS=Xylella fastidiosa GN=nuoB PE=3 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 7.009e-50
Identity = 89/124 (71.77%), Postives = 102/124 (82.26%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+GI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVD+YVPGCPP
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPP 160
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB_XYLF2 (NADH-quinone oxidoreductase subunit B OS=Xylella fastidiosa (strain M23) GN=nuoB PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.009e-50
Identity = 89/124 (71.77%), Postives = 102/124 (82.26%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+GI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVD+YVPGCPP
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPP 160
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB_XANCP (NADH-quinone oxidoreductase subunit B OS=Xanthomonas campestris pv. campestris GN=nuoB PE=3 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 7.009e-50
Identity = 89/124 (71.77%), Postives = 102/124 (82.26%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPP
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 160
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB_XANCB (NADH-quinone oxidoreductase subunit B OS=Xanthomonas campestris pv. campestris (strain B100) GN=nuoB PE=3 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 7.009e-50
Identity = 89/124 (71.77%), Postives = 102/124 (82.26%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPP
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 160
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB_XANC8 (NADH-quinone oxidoreductase subunit B OS=Xanthomonas campestris pv. campestris (strain 8004) GN=nuoB PE=3 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 7.009e-50
Identity = 89/124 (71.77%), Postives = 102/124 (82.26%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPP
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 160
The following BLAST results are available for this feature:
BLAST of FC923592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB1_BURMA5.367e-5071.77NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_BURM95.367e-5071.77NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_BURM75.367e-5071.77NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB_XYLFT7.009e-5071.77NADH-quinone oxidoreductase subunit B OS=Xylella f... [more]
NUOB_XYLFM7.009e-5071.77NADH-quinone oxidoreductase subunit B OS=Xylella f... [more]
NUOB_XYLFA7.009e-5071.77NADH-quinone oxidoreductase subunit B OS=Xylella f... [more]
NUOB_XYLF27.009e-5071.77NADH-quinone oxidoreductase subunit B OS=Xylella f... [more]
NUOB_XANCP7.009e-5071.77NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANCB7.009e-5071.77NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANC87.009e-5071.77NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]

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Properties
Property NameValue
Genbank descriptionC31706H03EF StrClemenN Citrus clementina cDNA clone C31706H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923592 ID=FC923592; Name=FC923592; organism=Citrus clementina; type=EST; length=697bp
GACTTTCAACCCCAACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGT
GAGAAAACTAAACCAAACCAAACCAAACCCCACCCCACAACCCCCAAAAC
ACAAGCCCAAAAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACAC
TGCCACGCGCCTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACA
CGACCGTCCCCTCTCCCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCC
TCGCAGCCCACCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCC
AGGCGGTATCTCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATG
TCGTCAACTATATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTG
GCCTGCTGCGCCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTT
AGATCGATTCGGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCA
TGGTCGTAGCTGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAG
GTTTATGATCAAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTG
TGCAAATGGTGGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTT
GCGATAGGATTGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCT
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