FC923592

Overview
NameFC923592
Unique NameFC923592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB_FRAT1 (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=nuoB PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.154e-50
Identity = 88/124 (70.97%), Postives = 102/124 (82.26%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPALR+VYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPP
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 133
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB_LARHH (NADH-quinone oxidoreductase subunit B OS=Laribacter hongkongensis (strain HLHK9) GN=nuoB PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.196e-49
Identity = 88/124 (70.97%), Postives = 101/124 (81.45%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            F+ +  D V+N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFGI+FRPSPRQSD+M+VAGTL NKMAPALRKVYDQM +PRWV+SMGSCAN              CDRIVPVD+YVPGCPP
Sbjct:   11 FITTSADKVLNWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPP 134
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB_HERAR (NADH-quinone oxidoreductase subunit B OS=Herminiimonas arsenicoxydans GN=nuoB PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.196e-49
Identity = 88/124 (70.97%), Postives = 101/124 (81.45%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYD+DRFG++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPP
Sbjct:   11 FVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDMDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPP 134
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB_FRAP2 (NADH-quinone oxidoreductase subunit B OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=nuoB PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.196e-49
Identity = 87/124 (70.16%), Postives = 102/124 (82.26%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPALR+VYDQMPDP+WVISMGSCAN              CDRI+PVDIYVPGCPP
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPP 133
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB_BORPD (NADH-quinone oxidoreductase subunit B OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=nuoB PE=3 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.196e-49
Identity = 88/124 (70.97%), Postives = 101/124 (81.45%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            F+ +  D  +N+ + GS+WPM+FGLACCAVEMMH GAARYDLD+FGIIFRPSPRQSD+M+VAGTL NKMAPALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVD+YVPGCPP
Sbjct:   11 FITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPP 134
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB1_AZOSB (NADH-quinone oxidoreductase subunit B 1 OS=Azoarcus sp. (strain BH72) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.196e-49
Identity = 88/124 (70.97%), Postives = 101/124 (81.45%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            FV + LD V+N+ R GS+WPM+FGLACCAVEM+H G +RYDLDRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPP
Sbjct:   11 FVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCSRYDLDRFGVVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPP 134
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB_XANOR (NADH-quinone oxidoreductase subunit B OS=Xanthomonas oryzae pv. oryzae GN=nuoB PE=3 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.561e-49
Identity = 88/124 (70.97%), Postives = 102/124 (82.26%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GA+R DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPP
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 160
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB_XANOP (NADH-quinone oxidoreductase subunit B OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=nuoB PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.561e-49
Identity = 88/124 (70.97%), Postives = 102/124 (82.26%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GA+R DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPP
Sbjct:   35 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 158
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB_XANOM (NADH-quinone oxidoreductase subunit B OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=nuoB PE=3 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.561e-49
Identity = 88/124 (70.97%), Postives = 102/124 (82.26%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GA+R DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPP
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 160
[Close]
BLAST of FC923592 vs. ExPASy Swiss-Prot
Match: NUOB_XANC5 (NADH-quinone oxidoreductase subunit B OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=nuoB PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.561e-49
Identity = 88/124 (70.97%), Postives = 102/124 (82.26%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPP 697
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GA+R DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPP
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 160
The following BLAST results are available for this feature:
BLAST of FC923592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_FRAT19.154e-5070.97NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_LARHH1.196e-4970.97NADH-quinone oxidoreductase subunit B OS=Laribacte... [more]
NUOB_HERAR1.196e-4970.97NADH-quinone oxidoreductase subunit B OS=Herminiim... [more]
NUOB_FRAP21.196e-4970.16NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_BORPD1.196e-4970.97NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]
NUOB1_AZOSB1.196e-4970.97NADH-quinone oxidoreductase subunit B 1 OS=Azoarcu... [more]
NUOB_XANOR1.561e-4970.97NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANOP1.561e-4970.97NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANOM1.561e-4970.97NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANC51.561e-4970.97NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]

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Properties
Property NameValue
Genbank descriptionC31706H03EF StrClemenN Citrus clementina cDNA clone C31706H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923592 ID=FC923592; Name=FC923592; organism=Citrus clementina; type=EST; length=697bp
GACTTTCAACCCCAACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGT
GAGAAAACTAAACCAAACCAAACCAAACCCCACCCCACAACCCCCAAAAC
ACAAGCCCAAAAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACAC
TGCCACGCGCCTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACA
CGACCGTCCCCTCTCCCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCC
TCGCAGCCCACCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCC
AGGCGGTATCTCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATG
TCGTCAACTATATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTG
GCCTGCTGCGCCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTT
AGATCGATTCGGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCA
TGGTCGTAGCTGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAG
GTTTATGATCAAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTG
TGCAAATGGTGGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTT
GCGATAGGATTGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCT
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