FC923615

Overview
NameFC923615
Unique NameFC923615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923615_ssr100 microsatellite FC923615_ssr100:100..111. BLAST: Citrus ESTs to Prunus persica proteins V1
FC923615_ssr112 microsatellite FC923615_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14507 contig Ccv1_Contig14507:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNP2 (50S ribosomal protein L13 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplM PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.994e-35
Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            D+ WYVVDA D+ LGRLAS +A  +RGKN A YTP +D G +VIVVNAEKV V+G+K  QK+YRRHSGRPGGMK ETF+QLQ RIPERIIE AV+GMLPK  L
Sbjct:   13 DQKWYVVDAADQRLGRLASEVAKVLRGKNKAEYTPHMDTGDFVIVVNAEKVVVTGRKPEQKLYRRHSGRPGGMKVETFNQLQDRIPERIIEKAVKGMLPKNAL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_CYAP7 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7424) GN=rplM PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            DK WYV+DA  + LGRLAS IA+ +RGKN  TYTP +D G +VIV+NAEKV V+GKK  QK+Y RHSGRPGGMK ETF++LQ R+PERI+E AV+GMLPK  L
Sbjct:   13 DKQWYVIDAAGQRLGRLASEIAMILRGKNKPTYTPHLDTGDFVIVINAEKVIVTGKKSQQKVYHRHSGRPGGMKVETFEKLQARLPERIVEKAVKGMLPKNSL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNY3 (50S ribosomal protein L13 OS=Synechocystis sp. (strain PCC 6803) GN=rplM PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.656e-34
Identity = 66/103 (64.08%), Postives = 84/103 (81.55%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            D  WYV+DA  + LGRLA+ +A  +RGKN  T+TP +D G +VI++NAEK+ V+G+KR QK+YRRHSGRPGGMKEETF++LQ R+PERI+E AVRGMLPK  L
Sbjct:   13 DHKWYVIDAEGQRLGRLATEVATILRGKNKPTFTPHMDTGDFVIIINAEKIEVTGRKREQKLYRRHSGRPGGMKEETFEKLQVRLPERIVESAVRGMLPKNSL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ACAM1 (50S ribosomal protein L13 OS=Acaryochloris marina (strain MBIC 11017) GN=rplM PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.656e-34
Identity = 70/104 (67.31%), Postives = 84/104 (80.77%), Query Frame = 2
Query:  365 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            +DK WYVVDA ++ LGRLA+ IA+ +RGKN  TYTP ++ G +VIV+NAEKV V+G K  QK+YRRHSGRPGGMK ETF+ LQ RIPERIIE AV+GMLPK  L
Sbjct:   12 ADKKWYVVDAENQRLGRLATQIAMILRGKNKPTYTPFMNTGDFVIVINAEKVTVTGNKGEQKLYRRHSGRPGGMKTETFNHLQERIPERIIEKAVKGMLPKNAL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROMS (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain AS9601) GN=rplM PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.928e-33
Identity = 69/103 (66.99%), Postives = 82/103 (79.61%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ W++VDA DK LGRLA+ IA  +RGKN  TYTP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP   L
Sbjct:   13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTYTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKIEKFESLQERIPERIIEQAVKGMLPHNSL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROM9 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplM PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.928e-33
Identity = 68/103 (66.02%), Postives = 82/103 (79.61%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ W++VDA DK LGRLA+ IA  +RGKN  T+TP +D G +VIVVNAEK+ VSGKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP   L
Sbjct:   13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTFTPHLDTGDFVIVVNAEKIEVSGKKASQKLYRRHSGRPGGMKTEKFESLQERIPERIIEQAVKGMLPHNSL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNP6 (50S ribosomal protein L13 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplM PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ WYVVDA D+ LGRLA+ IA  +RGK+  TYTP +D G +VIV+NA+KV V+G+K +QK+YRRHSGRPGGMK ETF  LQ R+PERIIE AV+GMLPK  L
Sbjct:   13 ERNWYVVDAADQRLGRLATEIARVLRGKHKPTYTPHMDTGDFVIVINADKVTVTGRKASQKLYRRHSGRPGGMKVETFAHLQQRLPERIIEQAVKGMLPKNAL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNE7 (50S ribosomal protein L13 OS=Synechococcus elongatus (strain PCC 7942) GN=rplM PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ WYVVDA D+ LGRLA+ IA  +RGK+  TYTP +D G +VIV+NA+KV V+G+K +QK+YRRHSGRPGGMK ETF  LQ R+PERIIE AV+GMLPK  L
Sbjct:   13 ERNWYVVDAADQRLGRLATEIARVLRGKHKPTYTPHMDTGDFVIVINADKVTVTGRKASQKLYRRHSGRPGGMKVETFAHLQQRLPERIIEQAVKGMLPKNAL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROM5 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplM PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 68/103 (66.02%), Postives = 82/103 (79.61%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ W++VDA DK LGRLA+ IA  +RGKN  T+TP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP   L
Sbjct:   13 ERNWFLVDAKDKTLGRLATEIASVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKTSQKLYRRHSGRPGGMKVEKFESLQERIPERIIEQAVKGMLPHNSL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROM0 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplM PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 68/103 (66.02%), Postives = 82/103 (79.61%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ W++VDA DK LGRLA+ IA  +RGKN  T+TP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP   L
Sbjct:   13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKIEKFESLQERIPERIIEQAVKGMLPHNSL 115          
The following BLAST results are available for this feature:
BLAST of FC923615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_SYNP25.994e-3570.8750S ribosomal protein L13 OS=Synechococcus sp. (st... [more]
RL13_CYAP73.885e-3466.9950S ribosomal protein L13 OS=Cyanothece sp. (strai... [more]
RL13_SYNY38.656e-3464.0850S ribosomal protein L13 OS=Synechocystis sp. (st... [more]
RL13_ACAM18.656e-3467.3150S ribosomal protein L13 OS=Acaryochloris marina ... [more]
RL13_PROMS1.928e-3366.9950S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_PROM91.928e-3366.0250S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_SYNP65.610e-3365.0550S ribosomal protein L13 OS=Synechococcus sp. (st... [more]
RL13_SYNE75.610e-3365.0550S ribosomal protein L13 OS=Synechococcus elongat... [more]
RL13_PROM55.610e-3366.0250S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_PROM05.610e-3366.0250S ribosomal protein L13 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionC31707B02EF StrClemenN Citrus clementina cDNA clone C31707B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923615 ID=FC923615; Name=FC923615; organism=Citrus clementina; type=EST; length=678bp
GGAAGAAGAGAAGAGTAAACAAGAGGAAGCTGTAAAGAAAGAAACCAAAA
AAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACAA
TCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTAC
CATCAGTTCTAGCATAACCCCATTCCTCGGGTTCTCTGTTGCTTCAGCGA
AATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTGC
CAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGTC
CGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCTG
CTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGAT
AAGATTCTTGGTAGACTTGCATCCACTATTGCCATTCATATTCGTGGAAA
GAATCTGGCGACCTACACTCCCAGTGTGGACATGGGAGCATATGTGATTG
TGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAAG
ATCTACAGGAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACATT
TGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTTC
GCGGAATGCTTCCGAAAGGGAGGCTTGG
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