FC923615
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNP2 (50S ribosomal protein L13 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplM PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 5.994e-35 Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 D+ WYVVDA D+ LGRLAS +A +RGKN A YTP +D G +VIVVNAEKV V+G+K QK+YRRHSGRPGGMK ETF+QLQ RIPERIIE AV+GMLPK L Sbjct: 13 DQKWYVVDAADQRLGRLASEVAKVLRGKNKAEYTPHMDTGDFVIVVNAEKVVVTGRKPEQKLYRRHSGRPGGMKVETFNQLQDRIPERIIEKAVKGMLPKNAL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_CYAP7 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7424) GN=rplM PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34 Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 DK WYV+DA + LGRLAS IA+ +RGKN TYTP +D G +VIV+NAEKV V+GKK QK+Y RHSGRPGGMK ETF++LQ R+PERI+E AV+GMLPK L Sbjct: 13 DKQWYVIDAAGQRLGRLASEIAMILRGKNKPTYTPHLDTGDFVIVINAEKVIVTGKKSQQKVYHRHSGRPGGMKVETFEKLQARLPERIVEKAVKGMLPKNSL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNY3 (50S ribosomal protein L13 OS=Synechocystis sp. (strain PCC 6803) GN=rplM PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 8.656e-34 Identity = 66/103 (64.08%), Postives = 84/103 (81.55%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 D WYV+DA + LGRLA+ +A +RGKN T+TP +D G +VI++NAEK+ V+G+KR QK+YRRHSGRPGGMKEETF++LQ R+PERI+E AVRGMLPK L Sbjct: 13 DHKWYVIDAEGQRLGRLATEVATILRGKNKPTFTPHMDTGDFVIIINAEKIEVTGRKREQKLYRRHSGRPGGMKEETFEKLQVRLPERIVESAVRGMLPKNSL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ACAM1 (50S ribosomal protein L13 OS=Acaryochloris marina (strain MBIC 11017) GN=rplM PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 8.656e-34 Identity = 70/104 (67.31%), Postives = 84/104 (80.77%), Query Frame = 2 Query: 365 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 +DK WYVVDA ++ LGRLA+ IA+ +RGKN TYTP ++ G +VIV+NAEKV V+G K QK+YRRHSGRPGGMK ETF+ LQ RIPERIIE AV+GMLPK L Sbjct: 12 ADKKWYVVDAENQRLGRLATQIAMILRGKNKPTYTPFMNTGDFVIVINAEKVTVTGNKGEQKLYRRHSGRPGGMKTETFNHLQERIPERIIEKAVKGMLPKNAL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROMS (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain AS9601) GN=rplM PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.928e-33 Identity = 69/103 (66.99%), Postives = 82/103 (79.61%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ W++VDA DK LGRLA+ IA +RGKN TYTP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP L Sbjct: 13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTYTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKIEKFESLQERIPERIIEQAVKGMLPHNSL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROM9 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplM PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.928e-33 Identity = 68/103 (66.02%), Postives = 82/103 (79.61%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ W++VDA DK LGRLA+ IA +RGKN T+TP +D G +VIVVNAEK+ VSGKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP L Sbjct: 13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTFTPHLDTGDFVIVVNAEKIEVSGKKASQKLYRRHSGRPGGMKTEKFESLQERIPERIIEQAVKGMLPHNSL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNP6 (50S ribosomal protein L13 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplM PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33 Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ WYVVDA D+ LGRLA+ IA +RGK+ TYTP +D G +VIV+NA+KV V+G+K +QK+YRRHSGRPGGMK ETF LQ R+PERIIE AV+GMLPK L Sbjct: 13 ERNWYVVDAADQRLGRLATEIARVLRGKHKPTYTPHMDTGDFVIVINADKVTVTGRKASQKLYRRHSGRPGGMKVETFAHLQQRLPERIIEQAVKGMLPKNAL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNE7 (50S ribosomal protein L13 OS=Synechococcus elongatus (strain PCC 7942) GN=rplM PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33 Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ WYVVDA D+ LGRLA+ IA +RGK+ TYTP +D G +VIV+NA+KV V+G+K +QK+YRRHSGRPGGMK ETF LQ R+PERIIE AV+GMLPK L Sbjct: 13 ERNWYVVDAADQRLGRLATEIARVLRGKHKPTYTPHMDTGDFVIVINADKVTVTGRKASQKLYRRHSGRPGGMKVETFAHLQQRLPERIIEQAVKGMLPKNAL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROM5 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplM PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33 Identity = 68/103 (66.02%), Postives = 82/103 (79.61%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ W++VDA DK LGRLA+ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP L Sbjct: 13 ERNWFLVDAKDKTLGRLATEIASVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKTSQKLYRRHSGRPGGMKVEKFESLQERIPERIIEQAVKGMLPHNSL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROM0 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplM PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33 Identity = 68/103 (66.02%), Postives = 82/103 (79.61%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ W++VDA DK LGRLA+ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP L Sbjct: 13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKIEKFESLQERIPERIIEQAVKGMLPHNSL 115 The following BLAST results are available for this feature:
BLAST of FC923615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923615 ID=FC923615; Name=FC923615; organism=Citrus clementina; type=EST; length=678bpback to top |