FC923615

Overview
NameFC923615
Unique NameFC923615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SACEN (50S ribosomal protein L13 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=rplM PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.434e-28
Identity = 58/115 (50.43%), Postives = 85/115 (73.91%), Query Frame = 2
Query:  332 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            T+ PKA +  H+   W+V+DA D +LGRLA+  A+ +RGK+  TY P VD G +V+VVNAEKVA++G KR Q  + RHSG PGG+++++F Q+  + PER++E A++GMLPK +L
Sbjct:    3 TYSPKAGEVTHA---WHVIDAEDVVLGRLATQAALLLRGKHKPTYAPHVDTGDFVVVVNAEKVALTGNKRDQAFHYRHSGYPGGLRKQSFGQVLDKHPERLLEKAIKGMLPKNKL 114          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_CHRSD (50S ribosomal protein L13 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rplM PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.434e-28
Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 2
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDATDK LGRLA+ IA  +RGK+   YTP VD G Y++VVNAEKV V+G K   K Y RH+G PGG++  +F++L    PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATDKTLGRLATEIARRLRGKHKPEYTPHVDTGDYIVVVNAEKVRVTGNKAQAKNYYRHTGYPGGLRSMSFEKLIDHAPERVIESAVKGMLPKGPL 114          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_BIFLO (50S ribosomal protein L13 OS=Bifidobacterium longum GN=rplM PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.434e-28
Identity = 60/115 (52.17%), Postives = 85/115 (73.91%), Query Frame = 2
Query:  332 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            T+ PK AD  H    WYV+DATD +LGRLA+  AI +RGKN  TY P  D G +VI++NA+K+A++G K  +++Y  HSGRPGG++ +++ +L  + PERII++AV+GMLPK RL
Sbjct:    3 TFTPKPADLTHD---WYVIDATDVVLGRLATQAAILLRGKNKPTYAPHADSGNHVIIINADKIALTGNKMGKELY-SHSGRPGGLRRDSYAELLEKNPERIIKNAVKGMLPKNRL 113          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_BIFLD (50S ribosomal protein L13 OS=Bifidobacterium longum (strain DJO10A) GN=rplM PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.434e-28
Identity = 60/115 (52.17%), Postives = 85/115 (73.91%), Query Frame = 2
Query:  332 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            T+ PK AD  H    WYV+DATD +LGRLA+  AI +RGKN  TY P  D G +VI++NA+K+A++G K  +++Y  HSGRPGG++ +++ +L  + PERII++AV+GMLPK RL
Sbjct:    3 TFTPKPADLTHD---WYVIDATDVVLGRLATQAAILLRGKNKPTYAPHADSGNHVIIINADKIALTGNKMGKELY-SHSGRPGGLRRDSYAELLEKNPERIIKNAVKGMLPKNRL 113          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_AZOSE (50S ribosomal protein L13 OS=Azoarcus sp. (strain EbN1) GN=rplM PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.434e-28
Identity = 57/102 (55.88%), Postives = 76/102 (74.51%), Query Frame = 2
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + W+VVDA+DK+LGRLA+ +A  +RGK+ A YTP VD G +++VVN EK+ V+G K   K Y RH+G PGG+ E  F +LQ R PER++E AV+GMLPKG L
Sbjct:   13 RDWFVVDASDKVLGRLAAEVARRLRGKHKAIYTPHVDTGDFIVVVNVEKLRVTGNKALDKKYYRHTGYPGGIYETNFTKLQQRFPERVLEKAVKGMLPKGPL 114          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_EDWI9 (50S ribosomal protein L13 OS=Edwardsiella ictaluri (strain 93-146) GN=rplM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.097e-28
Identity = 61/102 (59.80%), Postives = 77/102 (75.49%), Query Frame = 2
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KR  K Y  H+G  GG+KE TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRLDKKYFHHTGHIGGIKEATFEEMIARHPERVIEIAVKGMLPKGPL 114          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_BIFLI (50S ribosomal protein L13 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rplM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.097e-28
Identity = 59/115 (51.30%), Postives = 85/115 (73.91%), Query Frame = 2
Query:  332 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            T+ PK AD  H    WYV+DATD +LGRLA+  A+ +RGKN  TY P  D G +VI++NA+K+A++G K  +++Y  HSGRPGG++ +++ +L  + PERII++AV+GMLPK RL
Sbjct:    3 TFTPKPADLTHD---WYVIDATDVVLGRLATQAAVLLRGKNKPTYAPHADSGNHVIIINADKIALTGNKMGKELY-SHSGRPGGLRRDSYAELLEKNPERIIKNAVKGMLPKNRL 113          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_VIBPA (50S ribosomal protein L13 OS=Vibrio parahaemolyticus GN=rplM PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 2
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDA  K LGRLAS IA  +RGK+ A YTP VD G Y+IV+NAEKVAV+G K   K+Y RHS  PGG+K  TF++L  R PE ++E AV+GMLP+G L
Sbjct:   13 RDWYVVDAEGKTLGRLASEIASRLRGKHKAEYTPHVDAGDYIIVINAEKVAVTGNKAKDKVYYRHSEFPGGLKSITFEKLIDRKPEMVLELAVKGMLPRGPL 114          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_RALSO (50S ribosomal protein L13 OS=Ralstonia solanacearum GN=rplM PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28
Identity = 56/102 (54.90%), Postives = 76/102 (74.51%), Query Frame = 2
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + W+V+DATDK+LGR+AS +A+ +RGK+   +TP VD G ++IV+NA K+ V+G K T K Y RHSG PGG+ E TF ++Q R P R +E AV+GMLPKG L
Sbjct:   13 RNWFVIDATDKVLGRVASEVALRLRGKHKPEFTPHVDTGDFIIVINAAKLRVTGAKTTDKKYYRHSGYPGGIYETTFGKMQQRFPGRALEKAVKGMLPKGPL 114          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PSEA6 (50S ribosomal protein L13 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rplM PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28
Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 2
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDA DK LGRLA+ IA  +RGK+   YTP VD G Y++V+NAEKV V+G K   K+Y  H+G PGG+KE  F++LQ   PE IIE AV+GMLPKG L
Sbjct:   13 REWYVVDAADKTLGRLATEIASRLRGKHKPEYTPHVDTGDYIVVINAEKVVVTGNKAKGKMYYSHTGYPGGLKETNFEKLQAFKPEMIIEKAVKGMLPKGPL 114          
The following BLAST results are available for this feature:
BLAST of FC923615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_SACEN5.434e-2850.4350S ribosomal protein L13 OS=Saccharopolyspora ery... [more]
RL13_CHRSD5.434e-2858.8250S ribosomal protein L13 OS=Chromohalobacter sale... [more]
RL13_BIFLO5.434e-2852.1750S ribosomal protein L13 OS=Bifidobacterium longu... [more]
RL13_BIFLD5.434e-2852.1750S ribosomal protein L13 OS=Bifidobacterium longu... [more]
RL13_AZOSE5.434e-2855.8850S ribosomal protein L13 OS=Azoarcus sp. (strain ... [more]
RL13_EDWI97.097e-2859.8050S ribosomal protein L13 OS=Edwardsiella ictaluri... [more]
RL13_BIFLI7.097e-2851.3050S ribosomal protein L13 OS=Bifidobacterium longu... [more]
RL13_VIBPA9.269e-2859.8050S ribosomal protein L13 OS=Vibrio parahaemolytic... [more]
RL13_RALSO9.269e-2854.9050S ribosomal protein L13 OS=Ralstonia solanacearu... [more]
RL13_PSEA69.269e-2858.8250S ribosomal protein L13 OS=Pseudoalteromonas atl... [more]

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Properties
Property NameValue
Genbank descriptionC31707B02EF StrClemenN Citrus clementina cDNA clone C31707B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923615 ID=FC923615; Name=FC923615; organism=Citrus clementina; type=EST; length=678bp
GGAAGAAGAGAAGAGTAAACAAGAGGAAGCTGTAAAGAAAGAAACCAAAA
AAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACAA
TCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTAC
CATCAGTTCTAGCATAACCCCATTCCTCGGGTTCTCTGTTGCTTCAGCGA
AATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTGC
CAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGTC
CGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCTG
CTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGAT
AAGATTCTTGGTAGACTTGCATCCACTATTGCCATTCATATTCGTGGAAA
GAATCTGGCGACCTACACTCCCAGTGTGGACATGGGAGCATATGTGATTG
TGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAAG
ATCTACAGGAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACATT
TGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTTC
GCGGAATGCTTCCGAAAGGGAGGCTTGG
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