FC923615
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SACEN (50S ribosomal protein L13 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=rplM PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.434e-28 Identity = 58/115 (50.43%), Postives = 85/115 (73.91%), Query Frame = 2 Query: 332 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 T+ PKA + H+ W+V+DA D +LGRLA+ A+ +RGK+ TY P VD G +V+VVNAEKVA++G KR Q + RHSG PGG+++++F Q+ + PER++E A++GMLPK +L Sbjct: 3 TYSPKAGEVTHA---WHVIDAEDVVLGRLATQAALLLRGKHKPTYAPHVDTGDFVVVVNAEKVALTGNKRDQAFHYRHSGYPGGLRKQSFGQVLDKHPERLLEKAIKGMLPKNKL 114
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_CHRSD (50S ribosomal protein L13 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rplM PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.434e-28 Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 2 Query: 371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 + WYVVDATDK LGRLA+ IA +RGK+ YTP VD G Y++VVNAEKV V+G K K Y RH+G PGG++ +F++L PER+IE AV+GMLPKG L Sbjct: 13 RDWYVVDATDKTLGRLATEIARRLRGKHKPEYTPHVDTGDYIVVVNAEKVRVTGNKAQAKNYYRHTGYPGGLRSMSFEKLIDHAPERVIESAVKGMLPKGPL 114
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_BIFLO (50S ribosomal protein L13 OS=Bifidobacterium longum GN=rplM PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.434e-28 Identity = 60/115 (52.17%), Postives = 85/115 (73.91%), Query Frame = 2 Query: 332 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 T+ PK AD H WYV+DATD +LGRLA+ AI +RGKN TY P D G +VI++NA+K+A++G K +++Y HSGRPGG++ +++ +L + PERII++AV+GMLPK RL Sbjct: 3 TFTPKPADLTHD---WYVIDATDVVLGRLATQAAILLRGKNKPTYAPHADSGNHVIIINADKIALTGNKMGKELY-SHSGRPGGLRRDSYAELLEKNPERIIKNAVKGMLPKNRL 113
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_BIFLD (50S ribosomal protein L13 OS=Bifidobacterium longum (strain DJO10A) GN=rplM PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.434e-28 Identity = 60/115 (52.17%), Postives = 85/115 (73.91%), Query Frame = 2 Query: 332 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 T+ PK AD H WYV+DATD +LGRLA+ AI +RGKN TY P D G +VI++NA+K+A++G K +++Y HSGRPGG++ +++ +L + PERII++AV+GMLPK RL Sbjct: 3 TFTPKPADLTHD---WYVIDATDVVLGRLATQAAILLRGKNKPTYAPHADSGNHVIIINADKIALTGNKMGKELY-SHSGRPGGLRRDSYAELLEKNPERIIKNAVKGMLPKNRL 113
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_AZOSE (50S ribosomal protein L13 OS=Azoarcus sp. (strain EbN1) GN=rplM PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.434e-28 Identity = 57/102 (55.88%), Postives = 76/102 (74.51%), Query Frame = 2 Query: 371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 + W+VVDA+DK+LGRLA+ +A +RGK+ A YTP VD G +++VVN EK+ V+G K K Y RH+G PGG+ E F +LQ R PER++E AV+GMLPKG L Sbjct: 13 RDWFVVDASDKVLGRLAAEVARRLRGKHKAIYTPHVDTGDFIVVVNVEKLRVTGNKALDKKYYRHTGYPGGIYETNFTKLQQRFPERVLEKAVKGMLPKGPL 114
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_EDWI9 (50S ribosomal protein L13 OS=Edwardsiella ictaluri (strain 93-146) GN=rplM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.097e-28 Identity = 61/102 (59.80%), Postives = 77/102 (75.49%), Query Frame = 2 Query: 371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 + WYVVDA+ K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+G KR K Y H+G GG+KE TF+++ R PER+IE AV+GMLPKG L Sbjct: 13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRLDKKYFHHTGHIGGIKEATFEEMIARHPERVIEIAVKGMLPKGPL 114
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_BIFLI (50S ribosomal protein L13 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rplM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.097e-28 Identity = 59/115 (51.30%), Postives = 85/115 (73.91%), Query Frame = 2 Query: 332 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 T+ PK AD H WYV+DATD +LGRLA+ A+ +RGKN TY P D G +VI++NA+K+A++G K +++Y HSGRPGG++ +++ +L + PERII++AV+GMLPK RL Sbjct: 3 TFTPKPADLTHD---WYVIDATDVVLGRLATQAAVLLRGKNKPTYAPHADSGNHVIIINADKIALTGNKMGKELY-SHSGRPGGLRRDSYAELLEKNPERIIKNAVKGMLPKNRL 113
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_VIBPA (50S ribosomal protein L13 OS=Vibrio parahaemolyticus GN=rplM PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28 Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 2 Query: 371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 + WYVVDA K LGRLAS IA +RGK+ A YTP VD G Y+IV+NAEKVAV+G K K+Y RHS PGG+K TF++L R PE ++E AV+GMLP+G L Sbjct: 13 RDWYVVDAEGKTLGRLASEIASRLRGKHKAEYTPHVDAGDYIIVINAEKVAVTGNKAKDKVYYRHSEFPGGLKSITFEKLIDRKPEMVLELAVKGMLPRGPL 114
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_RALSO (50S ribosomal protein L13 OS=Ralstonia solanacearum GN=rplM PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28 Identity = 56/102 (54.90%), Postives = 76/102 (74.51%), Query Frame = 2 Query: 371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 + W+V+DATDK+LGR+AS +A+ +RGK+ +TP VD G ++IV+NA K+ V+G K T K Y RHSG PGG+ E TF ++Q R P R +E AV+GMLPKG L Sbjct: 13 RNWFVIDATDKVLGRVASEVALRLRGKHKPEFTPHVDTGDFIIVINAAKLRVTGAKTTDKKYYRHSGYPGGIYETTFGKMQQRFPGRALEKAVKGMLPKGPL 114
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PSEA6 (50S ribosomal protein L13 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rplM PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28 Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 2 Query: 371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 + WYVVDA DK LGRLA+ IA +RGK+ YTP VD G Y++V+NAEKV V+G K K+Y H+G PGG+KE F++LQ PE IIE AV+GMLPKG L Sbjct: 13 REWYVVDAADKTLGRLATEIASRLRGKHKPEYTPHVDTGDYIVVINAEKVVVTGNKAKGKMYYSHTGYPGGLKETNFEKLQAFKPEMIIEKAVKGMLPKGPL 114 The following BLAST results are available for this feature:
BLAST of FC923615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923615 ID=FC923615; Name=FC923615; organism=Citrus clementina; type=EST; length=678bpback to top |