FC923615
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_TRIEI (50S ribosomal protein L13 OS=Trichodesmium erythraeum (strain IMS101) GN=rplM PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 7.327e-33 Identity = 69/102 (67.65%), Postives = 81/102 (79.41%), Query Frame = 2 Query: 371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 K WYV+DA + LGRLA+ IA+ IRGKN TYTP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F +LQ R+P+RIIE AV GMLPK L Sbjct: 14 KKWYVIDAEGQRLGRLATAIAMIIRGKNKPTYTPHMDTGDFVIVVNAEKVTVTGKKSSQKLYRRHSGRPGGMKTEVFSKLQARLPQRIIEEAVFGMLPKNSL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNJB (50S ribosomal protein L13 OS=Synechococcus sp. GN=rplM PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33 Identity = 66/100 (66.00%), Postives = 82/100 (82.00%), Query Frame = 2 Query: 377 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 WY+VDA ++ LGRLA+ +A +RGK+ +TP +D G YVIV+NAEKV V+GKKRTQK+YRRHSGRPGGMK ETF QLQ R+PER++E AV+GMLP RL Sbjct: 16 WYLVDAANQRLGRLAAAVATLLRGKHKPDFTPHLDTGDYVIVINAEKVVVTGKKRTQKLYRRHSGRPGGMKVETFAQLQARLPERVVEKAVKGMLPHTRL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROMP (50S ribosomal protein L13 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplM PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33 Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ W++VDA DK LGRL++ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP L Sbjct: 13 ERNWFLVDAKDKTLGRLSTEIAAVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKVEKFESLQERIPERIIEQAVKGMLPHNSL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNS9 (50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9902) GN=rplM PE=3 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 2.132e-32 Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 D+ WYVVDA ++ LGRLA+ +A +RGKN +TP +D G +V+VVNAEK+ VSGKK QK+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP L Sbjct: 13 DRQWYVVDAENQTLGRLATEVASILRGKNNPNFTPHLDTGDFVVVVNAEKIQVSGKKPQQKLYRRHSGRPGGMKVETFESLQERIPERIVEKAIKGMLPHNAL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNS3 (50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9311) GN=rplM PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.132e-32 Identity = 64/103 (62.14%), Postives = 83/103 (80.58%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 D+ WY+VDA ++ LGRLA+ +A +RGKN A++TP +D G +VIVVNA+K+ VSGKK QK+YRRHSGRPGGMK ETF+ LQ R+PERI+E A++GMLP L Sbjct: 13 DRQWYLVDAENQTLGRLATEVASVLRGKNKASFTPHLDTGDFVIVVNADKIRVSGKKPQQKLYRRHSGRPGGMKVETFEHLQERLPERIVEKAIKGMLPHNAL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNJA (50S ribosomal protein L13 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplM PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.132e-32 Identity = 67/100 (67.00%), Postives = 81/100 (81.00%), Query Frame = 2 Query: 377 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 WY+VDA ++ LGRLA +A +RGK+ +TP +D G YVIV+NAEKV V+GKKRTQK+YRRHSGRPGGMK ETF QLQ R+PER+IE AV+GMLP RL Sbjct: 16 WYLVDAANQRLGRLAVVVAKLLRGKHKPNFTPHLDTGDYVIVINAEKVVVTGKKRTQKLYRRHSGRPGGMKVETFAQLQARLPERVIEKAVKGMLPHTRL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNPX (50S ribosomal protein L13 OS=Synechococcus sp. (strain WH8102) GN=rplM PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.784e-32 Identity = 64/103 (62.14%), Postives = 82/103 (79.61%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ WY+VDA +K LGRLA+ +A +RGKN ++TP +D G +V+VVNAEK+ VSG K TQK+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP L Sbjct: 13 ERQWYLVDAENKTLGRLATEVAAVLRGKNNPSFTPHLDTGDFVVVVNAEKIRVSGSKPTQKLYRRHSGRPGGMKTETFEALQDRIPERIVEKAIKGMLPHNAL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROM2 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplM PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.203e-32 Identity = 66/103 (64.08%), Postives = 82/103 (79.61%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ W++VDA +K LGRLA+ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ L+ RIPERIIE AV+GMLP L Sbjct: 13 ERNWFLVDAKNKTLGRLATEIATLLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKIEKFESLKERIPERIIEQAVKGMLPHNSL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNSC (50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9605) GN=rplM PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.805e-31 Identity = 63/103 (61.17%), Postives = 81/103 (78.64%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 D+ WYVVDA ++ LGRLA+ +A +RGK ++TP +D G +V+VVNAEK+ VSG+K QK+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP L Sbjct: 13 DRQWYVVDAENQTLGRLATEVAAVLRGKTNPSFTPHLDTGDFVVVVNAEKIKVSGRKPQQKLYRRHSGRPGGMKVETFEALQERIPERIVEKAIKGMLPHNAL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNPW (50S ribosomal protein L13 OS=Synechococcus sp. (strain WH7803) GN=rplM PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.357e-31 Identity = 62/103 (60.19%), Postives = 81/103 (78.64%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 D+ WY+VDA ++ LGRLA+ +A +RGKN A++TP +D G +V+VVNA+K+ VSG K QK+YRRHSGRPGGMK ETF LQ R+PERI+E A++GMLP L Sbjct: 13 DRQWYLVDAENQTLGRLATEVASVLRGKNKASFTPHLDTGDFVVVVNADKIRVSGNKPQQKLYRRHSGRPGGMKVETFTHLQERLPERIVEKAIKGMLPHNAL 115 The following BLAST results are available for this feature:
BLAST of FC923615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923615 ID=FC923615; Name=FC923615; organism=Citrus clementina; type=EST; length=678bpback to top |