FC923615

Overview
NameFC923615
Unique NameFC923615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923615_ssr100 microsatellite FC923615_ssr100:100..111. BLAST: Citrus ESTs to Prunus persica proteins V1
FC923615_ssr112 microsatellite FC923615_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14507 contig Ccv1_Contig14507:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_TRIEI (50S ribosomal protein L13 OS=Trichodesmium erythraeum (strain IMS101) GN=rplM PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.327e-33
Identity = 69/102 (67.65%), Postives = 81/102 (79.41%), Query Frame = 2
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            K WYV+DA  + LGRLA+ IA+ IRGKN  TYTP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F +LQ R+P+RIIE AV GMLPK  L
Sbjct:   14 KKWYVIDAEGQRLGRLATAIAMIIRGKNKPTYTPHMDTGDFVIVVNAEKVTVTGKKSSQKLYRRHSGRPGGMKTEVFSKLQARLPQRIIEEAVFGMLPKNSL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNJB (50S ribosomal protein L13 OS=Synechococcus sp. GN=rplM PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33
Identity = 66/100 (66.00%), Postives = 82/100 (82.00%), Query Frame = 2
Query:  377 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            WY+VDA ++ LGRLA+ +A  +RGK+   +TP +D G YVIV+NAEKV V+GKKRTQK+YRRHSGRPGGMK ETF QLQ R+PER++E AV+GMLP  RL
Sbjct:   16 WYLVDAANQRLGRLAAAVATLLRGKHKPDFTPHLDTGDYVIVINAEKVVVTGKKRTQKLYRRHSGRPGGMKVETFAQLQARLPERVVEKAVKGMLPHTRL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROMP (50S ribosomal protein L13 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplM PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33
Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ W++VDA DK LGRL++ IA  +RGKN  T+TP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP   L
Sbjct:   13 ERNWFLVDAKDKTLGRLSTEIAAVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKVEKFESLQERIPERIIEQAVKGMLPHNSL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNS9 (50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9902) GN=rplM PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.132e-32
Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            D+ WYVVDA ++ LGRLA+ +A  +RGKN   +TP +D G +V+VVNAEK+ VSGKK  QK+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP   L
Sbjct:   13 DRQWYVVDAENQTLGRLATEVASILRGKNNPNFTPHLDTGDFVVVVNAEKIQVSGKKPQQKLYRRHSGRPGGMKVETFESLQERIPERIVEKAIKGMLPHNAL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNS3 (50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9311) GN=rplM PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.132e-32
Identity = 64/103 (62.14%), Postives = 83/103 (80.58%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            D+ WY+VDA ++ LGRLA+ +A  +RGKN A++TP +D G +VIVVNA+K+ VSGKK  QK+YRRHSGRPGGMK ETF+ LQ R+PERI+E A++GMLP   L
Sbjct:   13 DRQWYLVDAENQTLGRLATEVASVLRGKNKASFTPHLDTGDFVIVVNADKIRVSGKKPQQKLYRRHSGRPGGMKVETFEHLQERLPERIVEKAIKGMLPHNAL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNJA (50S ribosomal protein L13 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplM PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.132e-32
Identity = 67/100 (67.00%), Postives = 81/100 (81.00%), Query Frame = 2
Query:  377 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            WY+VDA ++ LGRLA  +A  +RGK+   +TP +D G YVIV+NAEKV V+GKKRTQK+YRRHSGRPGGMK ETF QLQ R+PER+IE AV+GMLP  RL
Sbjct:   16 WYLVDAANQRLGRLAVVVAKLLRGKHKPNFTPHLDTGDYVIVINAEKVVVTGKKRTQKLYRRHSGRPGGMKVETFAQLQARLPERVIEKAVKGMLPHTRL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNPX (50S ribosomal protein L13 OS=Synechococcus sp. (strain WH8102) GN=rplM PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.784e-32
Identity = 64/103 (62.14%), Postives = 82/103 (79.61%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ WY+VDA +K LGRLA+ +A  +RGKN  ++TP +D G +V+VVNAEK+ VSG K TQK+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP   L
Sbjct:   13 ERQWYLVDAENKTLGRLATEVAAVLRGKNNPSFTPHLDTGDFVVVVNAEKIRVSGSKPTQKLYRRHSGRPGGMKTETFEALQDRIPERIVEKAIKGMLPHNAL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROM2 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplM PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.203e-32
Identity = 66/103 (64.08%), Postives = 82/103 (79.61%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ W++VDA +K LGRLA+ IA  +RGKN  T+TP +D G +VIVVNAEKV V+GKK +QK+YRRHSGRPGGMK E F+ L+ RIPERIIE AV+GMLP   L
Sbjct:   13 ERNWFLVDAKNKTLGRLATEIATLLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKIEKFESLKERIPERIIEQAVKGMLPHNSL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNSC (50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9605) GN=rplM PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.805e-31
Identity = 63/103 (61.17%), Postives = 81/103 (78.64%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            D+ WYVVDA ++ LGRLA+ +A  +RGK   ++TP +D G +V+VVNAEK+ VSG+K  QK+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP   L
Sbjct:   13 DRQWYVVDAENQTLGRLATEVAAVLRGKTNPSFTPHLDTGDFVVVVNAEKIKVSGRKPQQKLYRRHSGRPGGMKVETFEALQERIPERIVEKAIKGMLPHNAL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNPW (50S ribosomal protein L13 OS=Synechococcus sp. (strain WH7803) GN=rplM PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.357e-31
Identity = 62/103 (60.19%), Postives = 81/103 (78.64%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            D+ WY+VDA ++ LGRLA+ +A  +RGKN A++TP +D G +V+VVNA+K+ VSG K  QK+YRRHSGRPGGMK ETF  LQ R+PERI+E A++GMLP   L
Sbjct:   13 DRQWYLVDAENQTLGRLATEVASVLRGKNKASFTPHLDTGDFVVVVNADKIRVSGNKPQQKLYRRHSGRPGGMKVETFTHLQERLPERIVEKAIKGMLPHNAL 115          
The following BLAST results are available for this feature:
BLAST of FC923615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_TRIEI7.327e-3367.6550S ribosomal protein L13 OS=Trichodesmium erythra... [more]
RL13_SYNJB9.570e-3366.0050S ribosomal protein L13 OS=Synechococcus sp. GN=... [more]
RL13_PROMP9.570e-3365.0550S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_SYNS92.132e-3263.1150S ribosomal protein L13 OS=Synechococcus sp. (st... [more]
RL13_SYNS32.132e-3262.1450S ribosomal protein L13 OS=Synechococcus sp. (st... [more]
RL13_SYNJA2.132e-3267.0050S ribosomal protein L13 OS=Synechococcus sp. (st... [more]
RL13_SYNPX2.784e-3262.1450S ribosomal protein L13 OS=Synechococcus sp. (st... [more]
RL13_PROM26.203e-3264.0850S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_SYNSC1.805e-3161.1750S ribosomal protein L13 OS=Synechococcus sp. (st... [more]
RL13_SYNPW2.357e-3160.1950S ribosomal protein L13 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC31707B02EF StrClemenN Citrus clementina cDNA clone C31707B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923615 ID=FC923615; Name=FC923615; organism=Citrus clementina; type=EST; length=678bp
GGAAGAAGAGAAGAGTAAACAAGAGGAAGCTGTAAAGAAAGAAACCAAAA
AAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACAA
TCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTAC
CATCAGTTCTAGCATAACCCCATTCCTCGGGTTCTCTGTTGCTTCAGCGA
AATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTGC
CAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGTC
CGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCTG
CTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGAT
AAGATTCTTGGTAGACTTGCATCCACTATTGCCATTCATATTCGTGGAAA
GAATCTGGCGACCTACACTCCCAGTGTGGACATGGGAGCATATGTGATTG
TGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAAG
ATCTACAGGAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACATT
TGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTTC
GCGGAATGCTTCCGAAAGGGAGGCTTGG
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