FC923615

Overview
NameFC923615
Unique NameFC923615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROMA (50S ribosomal protein L13 OS=Prochlorococcus marinus GN=rplM PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.079e-31
Identity = 62/103 (60.19%), Postives = 82/103 (79.61%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ WY+VDA ++ LGRLA+ +A  +RGKN  ++TP +D G +VI+VNAEK+ V+GKK  QK+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP   L
Sbjct:   13 NRQWYLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVIIVNAEKIKVTGKKGMQKLYRRHSGRPGGMKVETFNSLQERIPERIVEKAIKGMLPHNAL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNR3 (50S ribosomal protein L13 OS=Synechococcus sp. (strain RCC307) GN=rplM PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.858e-31
Identity = 62/103 (60.19%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ WYVVDA ++ LGRLA+ +A  +RGKN  TYTP +D G +V+V+NA+KV V+G K + K+YRRHSGRPGGMK ETF  LQ RIPERI+E A++GMLP   L
Sbjct:   13 ERHWYVVDAENQCLGRLATEVASVLRGKNKPTYTPHLDTGDFVVVINADKVKVTGNKASDKLYRRHSGRPGGMKVETFAALQQRIPERIVEKAIKGMLPHNAL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROMT (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain NATL2A) GN=rplM PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31
Identity = 63/103 (61.17%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            D+ W++VDA ++ LGRLA+ +A  +RGK    +TP +D G +VIVVNAEK+ V+GKK  QK+YRRHSGRPGGMK ETF  LQ RIPERI+E A++GMLP  RL
Sbjct:   13 DRQWFLVDAENQTLGRLATEVASVLRGKTKPNFTPHLDTGDFVIVVNAEKIKVTGKKSDQKLYRRHSGRPGGMKVETFKALQSRIPERIVEKAIKGMLPHTRL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROM1 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain NATL1A) GN=rplM PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31
Identity = 63/103 (61.17%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            D+ W++VDA ++ LGRLA+ +A  +RGK    +TP +D G +VIVVNAEK+ V+GKK  QK+YRRHSGRPGGMK ETF  LQ RIPERI+E A++GMLP  RL
Sbjct:   13 DRQWFLVDAENQTLGRLATEVASVLRGKTKPNFTPHLDTGDFVIVVNAEKIKVTGKKSDQKLYRRHSGRPGGMKVETFKALQSRIPERIVEKAIKGMLPHTRL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RK13_PORPU (50S ribosomal protein L13, chloroplastic OS=Porphyra purpurea GN=rpl13 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.528e-30
Identity = 60/104 (57.69%), Postives = 85/104 (81.73%), Query Frame = 2
Query:  365 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + ++WYV+DA ++ LGR+++ I+  +RGKN  +YTP +D G YVIV+N+ +V+VSG K TQK+YRRHSG+PGG+K ETF+QLQ R+P RI+E +V+GMLPKG L
Sbjct:   11 TSQSWYVIDAKNQKLGRMSTHISNILRGKNKPSYTPYLDTGDYVIVINSSEVSVSGNKTTQKLYRRHSGQPGGLKVETFEQLQTRLPNRIVEKSVKGMLPKGPL 114          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RK13_PORYE (50S ribosomal protein L13, chloroplastic OS=Porphyra yezoensis GN=rpl13 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.995e-30
Identity = 65/117 (55.56%), Postives = 85/117 (72.65%), Query Frame = 2
Query:  326 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            N T  P    + H    WYV+DA ++ LGR+++ I+  +RGKN  +YTP +D G YVIV+N+  V+VSG K  QK+YRRHSG+PGG+K ETFDQLQ R+P RIIE +V+GMLPKG L
Sbjct:    2 NKTQSPSLNTNSH----WYVIDAKNQTLGRISTHISNILRGKNKPSYTPYLDTGDYVIVINSAHVSVSGNKTNQKLYRRHSGQPGGLKVETFDQLQTRLPNRIIEKSVKGMLPKGPL 114          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROMM (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplM PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.806e-30
Identity = 59/103 (57.28%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ W++VDA ++ LGRLA+ +A  +RGKN  ++TP +D G +V+VVNA+K+ VSG K  QK+YRRHSGRPGGMK ETF  LQ R+PERI+E A++GMLP   L
Sbjct:   13 ERQWFLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQKLYRRHSGRPGGMKVETFQALQDRLPERIVEKAIKGMLPHNAL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROM3 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplM PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.806e-30
Identity = 59/103 (57.28%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ W++VDA ++ LGRLA+ +A  +RGKN  ++TP +D G +V+VVNA+K+ VSG K  QK+YRRHSGRPGGMK ETF  LQ R+PERI+E A++GMLP   L
Sbjct:   13 ERQWFLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQKLYRRHSGRPGGMKVETFQALQDRLPERIVEKAIKGMLPHNAL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_YERE8 (50S ribosomal protein L13 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rplM PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 63/102 (61.76%), Postives = 79/102 (77.45%), Query Frame = 2
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDA  K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY RH+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDANGKTLGRLATELASRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYRHTGHIGGIKQATFEEMIARSPERVIEIAVKGMLPKGPL 114          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROMH (50S ribosomal protein L13 OS=Proteus mirabilis (strain HI4320) GN=rplM PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 63/102 (61.76%), Postives = 79/102 (77.45%), Query Frame = 2
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDA  K LGRLA+ IA  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT K+Y RH+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDADGKTLGRLATEIARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGHKRTDKVYYRHTGHVGGIKQATFEEMIARSPERVIEIAVKGMLPKGPL 114          
The following BLAST results are available for this feature:
BLAST of FC923615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_PROMA3.079e-3160.1950S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_SYNR36.858e-3160.1950S ribosomal protein L13 OS=Synechococcus sp. (st... [more]
RL13_PROMT8.957e-3161.1750S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_PROM18.957e-3161.1750S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RK13_PORPU1.528e-3057.6950S ribosomal protein L13, chloroplastic OS=Porphy... [more]
RK13_PORYE1.995e-3055.5650S ribosomal protein L13, chloroplastic OS=Porphy... [more]
RL13_PROMM5.806e-3057.2850S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_PROM35.806e-3057.2850S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_YERE87.583e-3061.7650S ribosomal protein L13 OS=Yersinia enterocoliti... [more]
RL13_PROMH9.903e-3061.7650S ribosomal protein L13 OS=Proteus mirabilis (st... [more]

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Properties
Property NameValue
Genbank descriptionC31707B02EF StrClemenN Citrus clementina cDNA clone C31707B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923615 ID=FC923615; Name=FC923615; organism=Citrus clementina; type=EST; length=678bp
GGAAGAAGAGAAGAGTAAACAAGAGGAAGCTGTAAAGAAAGAAACCAAAA
AAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACAA
TCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTAC
CATCAGTTCTAGCATAACCCCATTCCTCGGGTTCTCTGTTGCTTCAGCGA
AATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTGC
CAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGTC
CGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCTG
CTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGAT
AAGATTCTTGGTAGACTTGCATCCACTATTGCCATTCATATTCGTGGAAA
GAATCTGGCGACCTACACTCCCAGTGTGGACATGGGAGCATATGTGATTG
TGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAAG
ATCTACAGGAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACATT
TGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTTC
GCGGAATGCTTCCGAAAGGGAGGCTTGG
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