FC923615
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROMA (50S ribosomal protein L13 OS=Prochlorococcus marinus GN=rplM PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.079e-31 Identity = 62/103 (60.19%), Postives = 82/103 (79.61%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ WY+VDA ++ LGRLA+ +A +RGKN ++TP +D G +VI+VNAEK+ V+GKK QK+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP L Sbjct: 13 NRQWYLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVIIVNAEKIKVTGKKGMQKLYRRHSGRPGGMKVETFNSLQERIPERIVEKAIKGMLPHNAL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYNR3 (50S ribosomal protein L13 OS=Synechococcus sp. (strain RCC307) GN=rplM PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 6.858e-31 Identity = 62/103 (60.19%), Postives = 80/103 (77.67%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ WYVVDA ++ LGRLA+ +A +RGKN TYTP +D G +V+V+NA+KV V+G K + K+YRRHSGRPGGMK ETF LQ RIPERI+E A++GMLP L Sbjct: 13 ERHWYVVDAENQCLGRLATEVASVLRGKNKPTYTPHLDTGDFVVVINADKVKVTGNKASDKLYRRHSGRPGGMKVETFAALQQRIPERIVEKAIKGMLPHNAL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROMT (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain NATL2A) GN=rplM PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31 Identity = 63/103 (61.17%), Postives = 80/103 (77.67%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 D+ W++VDA ++ LGRLA+ +A +RGK +TP +D G +VIVVNAEK+ V+GKK QK+YRRHSGRPGGMK ETF LQ RIPERI+E A++GMLP RL Sbjct: 13 DRQWFLVDAENQTLGRLATEVASVLRGKTKPNFTPHLDTGDFVIVVNAEKIKVTGKKSDQKLYRRHSGRPGGMKVETFKALQSRIPERIVEKAIKGMLPHTRL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROM1 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain NATL1A) GN=rplM PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31 Identity = 63/103 (61.17%), Postives = 80/103 (77.67%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 D+ W++VDA ++ LGRLA+ +A +RGK +TP +D G +VIVVNAEK+ V+GKK QK+YRRHSGRPGGMK ETF LQ RIPERI+E A++GMLP RL Sbjct: 13 DRQWFLVDAENQTLGRLATEVASVLRGKTKPNFTPHLDTGDFVIVVNAEKIKVTGKKSDQKLYRRHSGRPGGMKVETFKALQSRIPERIVEKAIKGMLPHTRL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RK13_PORPU (50S ribosomal protein L13, chloroplastic OS=Porphyra purpurea GN=rpl13 PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.528e-30 Identity = 60/104 (57.69%), Postives = 85/104 (81.73%), Query Frame = 2 Query: 365 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 + ++WYV+DA ++ LGR+++ I+ +RGKN +YTP +D G YVIV+N+ +V+VSG K TQK+YRRHSG+PGG+K ETF+QLQ R+P RI+E +V+GMLPKG L Sbjct: 11 TSQSWYVIDAKNQKLGRMSTHISNILRGKNKPSYTPYLDTGDYVIVINSSEVSVSGNKTTQKLYRRHSGQPGGLKVETFEQLQTRLPNRIVEKSVKGMLPKGPL 114
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RK13_PORYE (50S ribosomal protein L13, chloroplastic OS=Porphyra yezoensis GN=rpl13 PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.995e-30 Identity = 65/117 (55.56%), Postives = 85/117 (72.65%), Query Frame = 2 Query: 326 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 N T P + H WYV+DA ++ LGR+++ I+ +RGKN +YTP +D G YVIV+N+ V+VSG K QK+YRRHSG+PGG+K ETFDQLQ R+P RIIE +V+GMLPKG L Sbjct: 2 NKTQSPSLNTNSH----WYVIDAKNQTLGRISTHISNILRGKNKPSYTPYLDTGDYVIVINSAHVSVSGNKTNQKLYRRHSGQPGGLKVETFDQLQTRLPNRIIEKSVKGMLPKGPL 114
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROMM (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplM PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.806e-30 Identity = 59/103 (57.28%), Postives = 80/103 (77.67%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ W++VDA ++ LGRLA+ +A +RGKN ++TP +D G +V+VVNA+K+ VSG K QK+YRRHSGRPGGMK ETF LQ R+PERI+E A++GMLP L Sbjct: 13 ERQWFLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQKLYRRHSGRPGGMKVETFQALQDRLPERIVEKAIKGMLPHNAL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROM3 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplM PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.806e-30 Identity = 59/103 (57.28%), Postives = 80/103 (77.67%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ W++VDA ++ LGRLA+ +A +RGKN ++TP +D G +V+VVNA+K+ VSG K QK+YRRHSGRPGGMK ETF LQ R+PERI+E A++GMLP L Sbjct: 13 ERQWFLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQKLYRRHSGRPGGMKVETFQALQDRLPERIVEKAIKGMLPHNAL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_YERE8 (50S ribosomal protein L13 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rplM PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30 Identity = 63/102 (61.76%), Postives = 79/102 (77.45%), Query Frame = 2 Query: 371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 + WYVVDA K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY RH+G GG+K+ TF+++ R PER+IE AV+GMLPKG L Sbjct: 13 RDWYVVDANGKTLGRLATELASRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYRHTGHIGGIKQATFEEMIARSPERVIEIAVKGMLPKGPL 114
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PROMH (50S ribosomal protein L13 OS=Proteus mirabilis (strain HI4320) GN=rplM PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30 Identity = 63/102 (61.76%), Postives = 79/102 (77.45%), Query Frame = 2 Query: 371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 + WYVVDA K LGRLA+ IA +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT K+Y RH+G GG+K+ TF+++ R PER+IE AV+GMLPKG L Sbjct: 13 RDWYVVDADGKTLGRLATEIARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGHKRTDKVYYRHTGHVGGIKQATFEEMIARSPERVIEIAVKGMLPKGPL 114 The following BLAST results are available for this feature:
BLAST of FC923615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923615 ID=FC923615; Name=FC923615; organism=Citrus clementina; type=EST; length=678bpback to top |