FC923615

Overview
NameFC923615
Unique NameFC923615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923615_ssr100 microsatellite FC923615_ssr100:100..111. BLAST: Citrus ESTs to Prunus persica proteins V1
FC923615_ssr112 microsatellite FC923615_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14507 contig Ccv1_Contig14507:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_CITK8 (50S ribosomal protein L13 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rplM PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 61/102 (59.80%), Postives = 80/102 (78.43%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A+ +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELALRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ALTMD (50S ribosomal protein L13 OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=rplM PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.293e-29
Identity = 62/102 (60.78%), Postives = 77/102 (75.49%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDATDK LGRLAS IA+ +RGK+   YTP VD G Y+IV+NAEKVAV+G+K   K+Y  HSG PGG+KE  F++L    PE ++E AV+GMLPKG L
Sbjct:   13 RDWYVVDATDKTLGRLASEIALRLRGKHKPEYTPHVDTGDYIIVINAEKVAVTGRKAQDKMYYAHSGYPGGLKETNFEKLIAHKPEMVLEKAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SERP5 (50S ribosomal protein L13 OS=Serratia proteamaculans (strain 568) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.881e-29
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDA  K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT K+Y RH+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDADGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKVYYRHTGYVGGIKQATFEEMIARNPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_LARHH (50S ribosomal protein L13 OS=Laribacter hongkongensis (strain HLHK9) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.881e-29
Identity = 60/102 (58.82%), Postives = 77/102 (75.49%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + W+VVDATDK+LGRLA+ IA  +RGK+   YTP VD G Y++VVNA+K+ V+G K   K Y RHSG PGG+ E TF +LQ+  PER++E AV+GMLPKG L
Sbjct:   13 RDWFVVDATDKVLGRLAAEIARRLRGKHKPEYTPHVDTGDYIVVVNADKLRVTGNKALDKKYYRHSGYPGGIYERTFTELQNEFPERVLEKAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SHIFL (50S ribosomal protein L13 OS=Shigella flexneri GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SHIDS (50S ribosomal protein L13 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SALTY (50S ribosomal protein L13 OS=Salmonella typhimurium GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SALTI (50S ribosomal protein L13 OS=Salmonella typhi GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SALSV (50S ribosomal protein L13 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SALPK (50S ribosomal protein L13 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
The following BLAST results are available for this feature:
BLAST of FC923615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_CITK89.903e-3059.8050S ribosomal protein L13 OS=Citrobacter koseri (s... [more]
RL13_ALTMD1.293e-2960.7850S ribosomal protein L13 OS=Alteromonas macleodii... [more]
RL13_SERP52.881e-2960.7850S ribosomal protein L13 OS=Serratia proteamacula... [more]
RL13_LARHH2.881e-2958.8250S ribosomal protein L13 OS=Laribacter hongkongen... [more]
RL13_SHIFL3.763e-2959.8050S ribosomal protein L13 OS=Shigella flexneri GN=... [more]
RL13_SHIDS3.763e-2959.8050S ribosomal protein L13 OS=Shigella dysenteriae ... [more]
RL13_SALTY3.763e-2959.8050S ribosomal protein L13 OS=Salmonella typhimuriu... [more]
RL13_SALTI3.763e-2959.8050S ribosomal protein L13 OS=Salmonella typhi GN=r... [more]
RL13_SALSV3.763e-2959.8050S ribosomal protein L13 OS=Salmonella schwarzeng... [more]
RL13_SALPK3.763e-2959.8050S ribosomal protein L13 OS=Salmonella paratyphi ... [more]

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Properties
Property NameValue
Genbank descriptionC31707B02EF StrClemenN Citrus clementina cDNA clone C31707B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923615 ID=FC923615; Name=FC923615; organism=Citrus clementina; type=EST; length=678bp
GGAAGAAGAGAAGAGTAAACAAGAGGAAGCTGTAAAGAAAGAAACCAAAA
AAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACAA
TCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTAC
CATCAGTTCTAGCATAACCCCATTCCTCGGGTTCTCTGTTGCTTCAGCGA
AATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTGC
CAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGTC
CGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCTG
CTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGAT
AAGATTCTTGGTAGACTTGCATCCACTATTGCCATTCATATTCGTGGAAA
GAATCTGGCGACCTACACTCCCAGTGTGGACATGGGAGCATATGTGATTG
TGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAAG
ATCTACAGGAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACATT
TGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTTC
GCGGAATGCTTCCGAAAGGGAGGCTTGG
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