FC923615
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_CHLPB (50S ribosomal protein L13 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplM PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23 Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ WYVVDA K+LGRLAS IA +RGK+ +TP VD G +VIV NA K+ +SGKK QK Y HS PGG+K E + + PE++IE AV GMLP L Sbjct: 18 ERKWYVVDAEGKVLGRLASEIATILRGKHKPQFTPHVDTGDFVIVTNAGKIGLSGKKLDQKTYFSHSNYPGGVKIENLKDMLRKKPEKVIEKAVWGMLPHNNL 120
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_BORBZ (50S ribosomal protein L13 OS=Borrelia burgdorferi (strain ZS7) GN=rplM PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23 Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 +K WYV+DA D+ILG++A + +RGK+ A YTP D+G VI++NA KV ++GKK QK+Y RHS PGG+ +TF L R P +E A++GMLPKG L Sbjct: 18 EKKWYVIDAADRILGKVAVDVVKILRGKHKAYYTPHQDLGDNVIIINASKVKLTGKKYQQKLYYRHSRYPGGLYSDTFRTLSERKPCAPLEIAIKGMLPKGPL 120
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_BORBU (50S ribosomal protein L13 OS=Borrelia burgdorferi GN=rplM PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23 Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 +K WYV+DA D+ILG++A + +RGK+ A YTP D+G VI++NA KV ++GKK QK+Y RHS PGG+ +TF L R P +E A++GMLPKG L Sbjct: 18 EKKWYVIDAADRILGKVAVDVVKILRGKHKAYYTPHQDLGDNVIIINASKVKLTGKKYQQKLYYRHSRYPGGLYSDTFRTLSERKPCAPLEIAIKGMLPKGPL 120
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_BORAP (50S ribosomal protein L13 OS=Borrelia afzelii (strain PKo) GN=rplM PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23 Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 +K WYV+DA D++LG++A + +RGK+ A YTP D+G VIV+NA KV ++GKK QK+Y RHS PGG+ +TF L R P +E A++GMLPKG L Sbjct: 18 EKKWYVIDAADRVLGKVAVDVVRILRGKHKAYYTPHQDLGDNVIVINASKVRLTGKKYQQKLYYRHSRYPGGLYSDTFRTLSERKPCAPLEIAIKGMLPKGPL 120
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_XANP2 (50S ribosomal protein L13 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplM PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.874e-23 Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFD-QLQHRIPERIIEHAVRGMLPKGRL 676 +K W V+DA+ ++GRLA+ IA+ ++GK+L YTP VD G ++VVNAEK +G+K+ QK+Y H+G PGG+KE T L+ R PER+IE AV ML +G L Sbjct: 12 EKKWVVIDASGLVVGRLATIIAMRLKGKHLPIYTPHVDCGDNIVVVNAEKAVFTGRKKDQKVYYHHTGFPGGIKERTAKFVLEGRFPERVIEKAVERMLARGPL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_RHISN (50S ribosomal protein L13 OS=Rhizobium sp. (strain NGR234) GN=rplM PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.874e-23 Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQ-LQHRIPERIIEHAVRGMLPKGRL 676 +K W ++DA ++GRLAS IA +RGK+ AT+TP VD G VIV+NAEK ++GKK T K Y H+G PGG+KE T Q ++ R PER+IE AV M+P+G L Sbjct: 12 EKKWILIDAEGLVVGRLASIIANRLRGKHKATFTPHVDDGDNVIVINAEKAVLTGKKYTDKKYYWHTGYPGGIKERTARQIIEGRFPERVIEKAVERMVPRGPL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_DESVV (50S ribosomal protein L13 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplM PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.874e-23 Identity = 51/103 (49.51%), Postives = 72/103 (69.90%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ W+VVDA DKILGRLA+ IA +RGK+ + P +D G +++VVN EK+ V+GKK QK Y HSG GG++E + ++L PE ++ AVRGMLP+ RL Sbjct: 12 NREWFVVDAEDKILGRLATQIAHRLRGKHKPEFAPHMDNGDFIVVVNCEKIKVTGKKLDQKKYYNHSGYVGGLRETSLEKLLASKPEEVLLKAVRGMLPRNRL 114
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_DESVH (50S ribosomal protein L13 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplM PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.874e-23 Identity = 51/103 (49.51%), Postives = 72/103 (69.90%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ W+VVDA DKILGRLA+ IA +RGK+ + P +D G +++VVN EK+ V+GKK QK Y HSG GG++E + ++L PE ++ AVRGMLP+ RL Sbjct: 12 NREWFVVDAEDKILGRLATQIAHRLRGKHKPEFAPHMDNGDFIVVVNCEKIKVTGKKLDQKKYYNHSGYVGGLRETSLEKLLASKPEEVLLKAVRGMLPRNRL 114
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_CLOBM (50S ribosomal protein L13 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplM PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.874e-23 Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ WY+VDA DK LGR+AS +A +RGK+ TYTP VD G VIV+N EKV ++GKK QK+ R HS PGG+KE + + + PE + E AVR MLP G L Sbjct: 12 ERKWYIVDAADKPLGRVASQVASILRGKHKPTYTPHVDTGDNVIVINVEKVVLTGKKLDQKLLRHHSLYPGGLKEIPYREAIAKKPEFVFEEAVRRMLPSGVL 114
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_CLOB1 (50S ribosomal protein L13 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rplM PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.874e-23 Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ WY+VDA DK LGR+AS +A +RGK+ TYTP VD G VIV+N EKV ++GKK QK+ R HS PGG+KE + + + PE + E AVR MLP G L Sbjct: 12 ERKWYIVDAADKPLGRVASQVASILRGKHKPTYTPHVDTGDNVIVINVEKVVLTGKKLDQKLLRHHSLYPGGLKEIPYREAIAKKPEFVFEEAVRRMLPSGVL 114 The following BLAST results are available for this feature:
BLAST of FC923615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923615 ID=FC923615; Name=FC923615; organism=Citrus clementina; type=EST; length=678bpback to top |