FC923615

Overview
NameFC923615
Unique NameFC923615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_CHLPB (50S ribosomal protein L13 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplM PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ WYVVDA  K+LGRLAS IA  +RGK+   +TP VD G +VIV NA K+ +SGKK  QK Y  HS  PGG+K E    +  + PE++IE AV GMLP   L
Sbjct:   18 ERKWYVVDAEGKVLGRLASEIATILRGKHKPQFTPHVDTGDFVIVTNAGKIGLSGKKLDQKTYFSHSNYPGGVKIENLKDMLRKKPEKVIEKAVWGMLPHNNL 120          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_BORBZ (50S ribosomal protein L13 OS=Borrelia burgdorferi (strain ZS7) GN=rplM PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            +K WYV+DA D+ILG++A  +   +RGK+ A YTP  D+G  VI++NA KV ++GKK  QK+Y RHS  PGG+  +TF  L  R P   +E A++GMLPKG L
Sbjct:   18 EKKWYVIDAADRILGKVAVDVVKILRGKHKAYYTPHQDLGDNVIIINASKVKLTGKKYQQKLYYRHSRYPGGLYSDTFRTLSERKPCAPLEIAIKGMLPKGPL 120          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_BORBU (50S ribosomal protein L13 OS=Borrelia burgdorferi GN=rplM PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            +K WYV+DA D+ILG++A  +   +RGK+ A YTP  D+G  VI++NA KV ++GKK  QK+Y RHS  PGG+  +TF  L  R P   +E A++GMLPKG L
Sbjct:   18 EKKWYVIDAADRILGKVAVDVVKILRGKHKAYYTPHQDLGDNVIIINASKVKLTGKKYQQKLYYRHSRYPGGLYSDTFRTLSERKPCAPLEIAIKGMLPKGPL 120          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_BORAP (50S ribosomal protein L13 OS=Borrelia afzelii (strain PKo) GN=rplM PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            +K WYV+DA D++LG++A  +   +RGK+ A YTP  D+G  VIV+NA KV ++GKK  QK+Y RHS  PGG+  +TF  L  R P   +E A++GMLPKG L
Sbjct:   18 EKKWYVIDAADRVLGKVAVDVVRILRGKHKAYYTPHQDLGDNVIVINASKVRLTGKKYQQKLYYRHSRYPGGLYSDTFRTLSERKPCAPLEIAIKGMLPKGPL 120          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_XANP2 (50S ribosomal protein L13 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplM PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.874e-23
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFD-QLQHRIPERIIEHAVRGMLPKGRL 676
            +K W V+DA+  ++GRLA+ IA+ ++GK+L  YTP VD G  ++VVNAEK   +G+K+ QK+Y  H+G PGG+KE T    L+ R PER+IE AV  ML +G L
Sbjct:   12 EKKWVVIDASGLVVGRLATIIAMRLKGKHLPIYTPHVDCGDNIVVVNAEKAVFTGRKKDQKVYYHHTGFPGGIKERTAKFVLEGRFPERVIEKAVERMLARGPL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_RHISN (50S ribosomal protein L13 OS=Rhizobium sp. (strain NGR234) GN=rplM PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.874e-23
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQ-LQHRIPERIIEHAVRGMLPKGRL 676
            +K W ++DA   ++GRLAS IA  +RGK+ AT+TP VD G  VIV+NAEK  ++GKK T K Y  H+G PGG+KE T  Q ++ R PER+IE AV  M+P+G L
Sbjct:   12 EKKWILIDAEGLVVGRLASIIANRLRGKHKATFTPHVDDGDNVIVINAEKAVLTGKKYTDKKYYWHTGYPGGIKERTARQIIEGRFPERVIEKAVERMVPRGPL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_DESVV (50S ribosomal protein L13 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplM PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.874e-23
Identity = 51/103 (49.51%), Postives = 72/103 (69.90%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ W+VVDA DKILGRLA+ IA  +RGK+   + P +D G +++VVN EK+ V+GKK  QK Y  HSG  GG++E + ++L    PE ++  AVRGMLP+ RL
Sbjct:   12 NREWFVVDAEDKILGRLATQIAHRLRGKHKPEFAPHMDNGDFIVVVNCEKIKVTGKKLDQKKYYNHSGYVGGLRETSLEKLLASKPEEVLLKAVRGMLPRNRL 114          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_DESVH (50S ribosomal protein L13 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplM PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.874e-23
Identity = 51/103 (49.51%), Postives = 72/103 (69.90%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ W+VVDA DKILGRLA+ IA  +RGK+   + P +D G +++VVN EK+ V+GKK  QK Y  HSG  GG++E + ++L    PE ++  AVRGMLP+ RL
Sbjct:   12 NREWFVVDAEDKILGRLATQIAHRLRGKHKPEFAPHMDNGDFIVVVNCEKIKVTGKKLDQKKYYNHSGYVGGLRETSLEKLLASKPEEVLLKAVRGMLPRNRL 114          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_CLOBM (50S ribosomal protein L13 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplM PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.874e-23
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ WY+VDA DK LGR+AS +A  +RGK+  TYTP VD G  VIV+N EKV ++GKK  QK+ R HS  PGG+KE  + +   + PE + E AVR MLP G L
Sbjct:   12 ERKWYIVDAADKPLGRVASQVASILRGKHKPTYTPHVDTGDNVIVINVEKVVLTGKKLDQKLLRHHSLYPGGLKEIPYREAIAKKPEFVFEEAVRRMLPSGVL 114          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_CLOB1 (50S ribosomal protein L13 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rplM PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.874e-23
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ WY+VDA DK LGR+AS +A  +RGK+  TYTP VD G  VIV+N EKV ++GKK  QK+ R HS  PGG+KE  + +   + PE + E AVR MLP G L
Sbjct:   12 ERKWYIVDAADKPLGRVASQVASILRGKHKPTYTPHVDTGDNVIVINVEKVVLTGKKLDQKLLRHHSLYPGGLKEIPYREAIAKKPEFVFEEAVRRMLPSGVL 114          
The following BLAST results are available for this feature:
BLAST of FC923615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_CHLPB5.263e-2352.4350S ribosomal protein L13 OS=Chlorobium phaeobacte... [more]
RL13_BORBZ5.263e-2350.4950S ribosomal protein L13 OS=Borrelia burgdorferi ... [more]
RL13_BORBU5.263e-2350.4950S ribosomal protein L13 OS=Borrelia burgdorferi ... [more]
RL13_BORAP5.263e-2350.4950S ribosomal protein L13 OS=Borrelia afzelii (str... [more]
RL13_XANP26.874e-2350.0050S ribosomal protein L13 OS=Xanthobacter autotrop... [more]
RL13_RHISN6.874e-2352.8850S ribosomal protein L13 OS=Rhizobium sp. (strain... [more]
RL13_DESVV6.874e-2349.5150S ribosomal protein L13 OS=Desulfovibrio vulgari... [more]
RL13_DESVH6.874e-2349.5150S ribosomal protein L13 OS=Desulfovibrio vulgari... [more]
RL13_CLOBM6.874e-2352.4350S ribosomal protein L13 OS=Clostridium botulinum... [more]
RL13_CLOB16.874e-2352.4350S ribosomal protein L13 OS=Clostridium botulinum... [more]

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Properties
Property NameValue
Genbank descriptionC31707B02EF StrClemenN Citrus clementina cDNA clone C31707B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923615 ID=FC923615; Name=FC923615; organism=Citrus clementina; type=EST; length=678bp
GGAAGAAGAGAAGAGTAAACAAGAGGAAGCTGTAAAGAAAGAAACCAAAA
AAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACAA
TCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTAC
CATCAGTTCTAGCATAACCCCATTCCTCGGGTTCTCTGTTGCTTCAGCGA
AATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTGC
CAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGTC
CGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCTG
CTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGAT
AAGATTCTTGGTAGACTTGCATCCACTATTGCCATTCATATTCGTGGAAA
GAATCTGGCGACCTACACTCCCAGTGTGGACATGGGAGCATATGTGATTG
TGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAAG
ATCTACAGGAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACATT
TGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTTC
GCGGAATGCTTCCGAAAGGGAGGCTTGG
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