FC923615

Overview
NameFC923615
Unique NameFC923615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SALPC (50S ribosomal protein L13 OS=Salmonella paratyphi C (strain RKS4594) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SALPB (50S ribosomal protein L13 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SALPA (50S ribosomal protein L13 OS=Salmonella paratyphi A GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SALNS (50S ribosomal protein L13 OS=Salmonella newport (strain SL254) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SALHS (50S ribosomal protein L13 OS=Salmonella heidelberg (strain SL476) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SALG2 (50S ribosomal protein L13 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SALEP (50S ribosomal protein L13 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SALDC (50S ribosomal protein L13 OS=Salmonella dublin (strain CT_02021853) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SALCH (50S ribosomal protein L13 OS=Salmonella choleraesuis GN=rplM PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SALAR (50S ribosomal protein L13 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
The following BLAST results are available for this feature:
BLAST of FC923615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_SALPC3.763e-2959.8050S ribosomal protein L13 OS=Salmonella paratyphi ... [more]
RL13_SALPB3.763e-2959.8050S ribosomal protein L13 OS=Salmonella paratyphi ... [more]
RL13_SALPA3.763e-2959.8050S ribosomal protein L13 OS=Salmonella paratyphi ... [more]
RL13_SALNS3.763e-2959.8050S ribosomal protein L13 OS=Salmonella newport (s... [more]
RL13_SALHS3.763e-2959.8050S ribosomal protein L13 OS=Salmonella heidelberg... [more]
RL13_SALG23.763e-2959.8050S ribosomal protein L13 OS=Salmonella gallinarum... [more]
RL13_SALEP3.763e-2959.8050S ribosomal protein L13 OS=Salmonella enteritidi... [more]
RL13_SALDC3.763e-2959.8050S ribosomal protein L13 OS=Salmonella dublin (st... [more]
RL13_SALCH3.763e-2959.8050S ribosomal protein L13 OS=Salmonella choleraesu... [more]
RL13_SALAR3.763e-2959.8050S ribosomal protein L13 OS=Salmonella arizonae (... [more]

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Properties
Property NameValue
Genbank descriptionC31707B02EF StrClemenN Citrus clementina cDNA clone C31707B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923615 ID=FC923615; Name=FC923615; organism=Citrus clementina; type=EST; length=678bp
GGAAGAAGAGAAGAGTAAACAAGAGGAAGCTGTAAAGAAAGAAACCAAAA
AAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACAA
TCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTAC
CATCAGTTCTAGCATAACCCCATTCCTCGGGTTCTCTGTTGCTTCAGCGA
AATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTGC
CAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGTC
CGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCTG
CTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGAT
AAGATTCTTGGTAGACTTGCATCCACTATTGCCATTCATATTCGTGGAAA
GAATCTGGCGACCTACACTCCCAGTGTGGACATGGGAGCATATGTGATTG
TGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAAG
ATCTACAGGAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACATT
TGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTTC
GCGGAATGCTTCCGAAAGGGAGGCTTGG
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