FC923615

Overview
NameFC923615
Unique NameFC923615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923615_ssr100 microsatellite FC923615_ssr100:100..111. BLAST: Citrus ESTs to Prunus persica proteins V1
FC923615_ssr112 microsatellite FC923615_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14507 contig Ccv1_Contig14507:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ECOL6 (50S ribosomal protein L13 OS=Escherichia coli O6 GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ECOL5 (50S ribosomal protein L13 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ECOK1 (50S ribosomal protein L13 OS=Escherichia coli O1:K1 / APEC GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ECOHS (50S ribosomal protein L13 OS=Escherichia coli O9:H4 (strain HS) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ECODH (50S ribosomal protein L13 OS=Escherichia coli (strain K12 / DH10B) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ECOBW (50S ribosomal protein L13 OS=Escherichia coli (strain K12 / BW2952) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ECO8A (50S ribosomal protein L13 OS=Escherichia coli O8 (strain IAI1) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ECO81 (50S ribosomal protein L13 OS=Escherichia coli O81 (strain ED1a) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ECO7I (50S ribosomal protein L13 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ECO5E (50S ribosomal protein L13 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
The following BLAST results are available for this feature:
BLAST of FC923615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_ECOL63.763e-2959.8050S ribosomal protein L13 OS=Escherichia coli O6 G... [more]
RL13_ECOL53.763e-2959.8050S ribosomal protein L13 OS=Escherichia coli O6:K... [more]
RL13_ECOK13.763e-2959.8050S ribosomal protein L13 OS=Escherichia coli O1:K... [more]
RL13_ECOHS3.763e-2959.8050S ribosomal protein L13 OS=Escherichia coli O9:H... [more]
RL13_ECODH3.763e-2959.8050S ribosomal protein L13 OS=Escherichia coli (str... [more]
RL13_ECOBW3.763e-2959.8050S ribosomal protein L13 OS=Escherichia coli (str... [more]
RL13_ECO8A3.763e-2959.8050S ribosomal protein L13 OS=Escherichia coli O8 (... [more]
RL13_ECO813.763e-2959.8050S ribosomal protein L13 OS=Escherichia coli O81 ... [more]
RL13_ECO7I3.763e-2959.8050S ribosomal protein L13 OS=Escherichia coli O7:K... [more]
RL13_ECO5E3.763e-2959.8050S ribosomal protein L13 OS=Escherichia coli O157... [more]

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Properties
Property NameValue
Genbank descriptionC31707B02EF StrClemenN Citrus clementina cDNA clone C31707B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923615 ID=FC923615; Name=FC923615; organism=Citrus clementina; type=EST; length=678bp
GGAAGAAGAGAAGAGTAAACAAGAGGAAGCTGTAAAGAAAGAAACCAAAA
AAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACAA
TCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTAC
CATCAGTTCTAGCATAACCCCATTCCTCGGGTTCTCTGTTGCTTCAGCGA
AATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTGC
CAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGTC
CGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCTG
CTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGAT
AAGATTCTTGGTAGACTTGCATCCACTATTGCCATTCATATTCGTGGAAA
GAATCTGGCGACCTACACTCCCAGTGTGGACATGGGAGCATATGTGATTG
TGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAAG
ATCTACAGGAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACATT
TGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTTC
GCGGAATGCTTCCGAAAGGGAGGCTTGG
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