FC923615

Overview
NameFC923615
Unique NameFC923615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923615_ssr100 microsatellite FC923615_ssr100:100..111. BLAST: Citrus ESTs to Prunus persica proteins V1
FC923615_ssr112 microsatellite FC923615_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14507 contig Ccv1_Contig14507:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ECO57 (50S ribosomal protein L13 OS=Escherichia coli O157:H7 GN=rplM PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ECO55 (50S ribosomal protein L13 OS=Escherichia coli (strain 55989 / EAEC) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ECO45 (50S ribosomal protein L13 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ECO27 (50S ribosomal protein L13 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ECO24 (50S ribosomal protein L13 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rplM PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K+Y  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_SYMTH (50S ribosomal protein L13 OS=Symbiobacterium thermophilum GN=rplM PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.915e-29
Identity = 61/109 (55.96%), Postives = 81/109 (74.31%), Query Frame = 2 
Query:  350 ADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            A+ ++ ++ WYVVDA  K LGRLAS +A  +RGK+  T+TP VD G +VI+VNAEK+ V+GKK T K+Y RHSG PGG K  TF+Q+  R PER++E A++GMLP  RL
Sbjct:    7 ANPQNVERKWYVVDAEGKTLGRLASKVAAILRGKHKPTFTPHVDCGDFVIIVNAEKIQVTGKKVTDKVYYRHSGYPGGQKATTFEQMIARRPERVLELAIKGMLPHNRL 115
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_YERPY (50S ribosomal protein L13 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rplM PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.419e-29
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_YERPS (50S ribosomal protein L13 OS=Yersinia pseudotuberculosis GN=rplM PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.419e-29
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_YERPP (50S ribosomal protein L13 OS=Yersinia pestis (strain Pestoides F) GN=rplM PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.419e-29
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_YERPN (50S ribosomal protein L13 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rplM PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.419e-29
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
The following BLAST results are available for this feature:
BLAST of FC923615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_ECO573.763e-2959.8050S ribosomal protein L13 OS=Escherichia coli O157... [more]
RL13_ECO553.763e-2959.8050S ribosomal protein L13 OS=Escherichia coli (str... [more]
RL13_ECO453.763e-2959.8050S ribosomal protein L13 OS=Escherichia coli O45:... [more]
RL13_ECO273.763e-2959.8050S ribosomal protein L13 OS=Escherichia coli O127... [more]
RL13_ECO243.763e-2959.8050S ribosomal protein L13 OS=Escherichia coli O139... [more]
RL13_SYMTH4.915e-2955.9650S ribosomal protein L13 OS=Symbiobacterium therm... [more]
RL13_YERPY6.419e-2960.7850S ribosomal protein L13 OS=Yersinia pseudotuberc... [more]
RL13_YERPS6.419e-2960.7850S ribosomal protein L13 OS=Yersinia pseudotuberc... [more]
RL13_YERPP6.419e-2960.7850S ribosomal protein L13 OS=Yersinia pestis (stra... [more]
RL13_YERPN6.419e-2960.7850S ribosomal protein L13 OS=Yersinia pestis bv. A... [more]

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Properties
Property NameValue
Genbank descriptionC31707B02EF StrClemenN Citrus clementina cDNA clone C31707B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923615 ID=FC923615; Name=FC923615; organism=Citrus clementina; type=EST; length=678bp
GGAAGAAGAGAAGAGTAAACAAGAGGAAGCTGTAAAGAAAGAAACCAAAA
AAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACAA
TCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTAC
CATCAGTTCTAGCATAACCCCATTCCTCGGGTTCTCTGTTGCTTCAGCGA
AATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTGC
CAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGTC
CGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCTG
CTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGAT
AAGATTCTTGGTAGACTTGCATCCACTATTGCCATTCATATTCGTGGAAA
GAATCTGGCGACCTACACTCCCAGTGTGGACATGGGAGCATATGTGATTG
TGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAAG
ATCTACAGGAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACATT
TGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTTC
GCGGAATGCTTCCGAAAGGGAGGCTTGG
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