FC923615

Overview
NameFC923615
Unique NameFC923615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923615_ssr100 microsatellite FC923615_ssr100:100..111. BLAST: Citrus ESTs to Prunus persica proteins V1
FC923615_ssr112 microsatellite FC923615_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14507 contig Ccv1_Contig14507:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_YERPG (50S ribosomal protein L13 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rplM PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.419e-29
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_YERPE (50S ribosomal protein L13 OS=Yersinia pestis GN=rplM PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.419e-29
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_YERPB (50S ribosomal protein L13 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rplM PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.419e-29
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_YERPA (50S ribosomal protein L13 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rplM PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.419e-29
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_YERP3 (50S ribosomal protein L13 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rplM PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.419e-29
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDA+ K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDASGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDKIYYHHTGFVGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_KLEP7 (50S ribosomal protein L13 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplM PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.419e-29
Identity = 62/102 (60.78%), Postives = 78/102 (76.47%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KR  K+Y  H+G  GG+KE TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKREDKMYYHHTGHIGGIKEATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_KLEP3 (50S ribosomal protein L13 OS=Klebsiella pneumoniae (strain 342) GN=rplM PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.419e-29
Identity = 62/102 (60.78%), Postives = 78/102 (76.47%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDAT K LGRLA+ +A  +RGK+ A YTP VD G Y+IV+NAEKVAV+G KR  K+Y  H+G  GG+KE TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKREDKMYYHHTGHIGGIKEATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_PHOLL (50S ribosomal protein L13 OS=Photorhabdus luminescens subsp. laumondii GN=rplM PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.384e-29
Identity = 61/102 (59.80%), Postives = 78/102 (76.47%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYVVDA  K LGRLA+ +A  +RGK+ A YTP VD G Y+I+VNAEKVAV+G KR+ KIY  H+G  GG+K+ TF+++  R PER+IE AV+GMLPKG L
Sbjct:   13 RDWYVVDADGKTLGRLATEVARRLRGKHKAEYTPHVDTGDYIIIVNAEKVAVTGNKRSDKIYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_HAHCH (50S ribosomal protein L13 OS=Hahella chejuensis (strain KCTC 2396) GN=rplM PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.384e-29
Identity = 59/102 (57.84%), Postives = 77/102 (75.49%), Query Frame = 2 
Query:  371 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            + WYV+DATDK LGRL++ IA  +RGK+ A YTP VD G Y++VVNAEKV V+G K   K+Y RH+G PGG+KE +FD+L    PER+IE AV+GM+P+  L
Sbjct:   13 RDWYVIDATDKTLGRLSTEIARRLRGKHKAEYTPHVDTGDYIVVVNAEKVRVTGNKAQDKMYYRHTGYPGGLKEMSFDKLIQHAPERVIETAVKGMMPRNPL 114
[Close]
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_EUBR3 (50S ribosomal protein L13 OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=rplM PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.384e-29
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 2 
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            D+ WYVVDA  K LGRLAS +A  +RGKN A +TP +D G YVIVVNA+KV V+GKK  QKIY  HS   GGMKE T  ++ ++ PER+IE+AV+GMLPKG L
Sbjct:   12 DRKWYVVDAEGKTLGRLASEVAKVLRGKNKAIFTPHIDTGDYVIVVNADKVKVTGKKLDQKIYYHHSDYIGGMKETTLREMMNKHPERVIEYAVKGMLPKGPL 114
The following BLAST results are available for this feature:
BLAST of FC923615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_YERPG6.419e-2960.7850S ribosomal protein L13 OS=Yersinia pestis bv. A... [more]
RL13_YERPE6.419e-2960.7850S ribosomal protein L13 OS=Yersinia pestis GN=rp... [more]
RL13_YERPB6.419e-2960.7850S ribosomal protein L13 OS=Yersinia pseudotuberc... [more]
RL13_YERPA6.419e-2960.7850S ribosomal protein L13 OS=Yersinia pestis bv. A... [more]
RL13_YERP36.419e-2960.7850S ribosomal protein L13 OS=Yersinia pseudotuberc... [more]
RL13_KLEP76.419e-2960.7850S ribosomal protein L13 OS=Klebsiella pneumoniae... [more]
RL13_KLEP36.419e-2960.7850S ribosomal protein L13 OS=Klebsiella pneumoniae... [more]
RL13_PHOLL8.384e-2959.8050S ribosomal protein L13 OS=Photorhabdus luminesc... [more]
RL13_HAHCH8.384e-2957.8450S ribosomal protein L13 OS=Hahella chejuensis (s... [more]
RL13_EUBR38.384e-2961.1750S ribosomal protein L13 OS=Eubacterium rectale (... [more]

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Properties
Property NameValue
Genbank descriptionC31707B02EF StrClemenN Citrus clementina cDNA clone C31707B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923615 ID=FC923615; Name=FC923615; organism=Citrus clementina; type=EST; length=678bp
GGAAGAAGAGAAGAGTAAACAAGAGGAAGCTGTAAAGAAAGAAACCAAAA
AAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACAA
TCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTAC
CATCAGTTCTAGCATAACCCCATTCCTCGGGTTCTCTGTTGCTTCAGCGA
AATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTGC
CAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGTC
CGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCTG
CTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGAT
AAGATTCTTGGTAGACTTGCATCCACTATTGCCATTCATATTCGTGGAAA
GAATCTGGCGACCTACACTCCCAGTGTGGACATGGGAGCATATGTGATTG
TGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAAG
ATCTACAGGAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACATT
TGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTTC
GCGGAATGCTTCCGAAAGGGAGGCTTGG
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