FC923616

Overview
NameFC923616
Unique NameFC923616
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.174e-40
Identity = 90/198 (45.45%), Postives = 114/198 (57.58%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH---------------------GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE                        GG                             +V+GLP S SWQDLKDHMR AGDVC++ VFRD    TG+V++   +DM YA+RKLD ++FR +    +Y+RV+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 212          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS9_RAT (Splicing factor, arginine/serine-rich 9 OS=Rattus norvegicus GN=Sfrs9 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.022e-34
Identity = 87/178 (48.88%), Postives = 111/178 (62.36%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVEL--AHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRV 619
            +YVGNLP D R +++EDLFYKYG I +I+LK       +AFV FED RDAEDAI GR+GY++   RLRVE   A+GG                             LV+GLP S SWQDLKDHMR AGDVC++ V +D  GM G+V+Y   +DM+YA+RKLD ++FR +    SY+RV
Sbjct:   16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRAYGG--------RGGWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS9_MOUSE (Splicing factor, arginine/serine-rich 9 OS=Mus musculus GN=Sfrs9 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.449e-34
Identity = 86/178 (48.31%), Postives = 110/178 (61.80%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVEL--AHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRV 619
            +YVGNLP D R +++EDLFYKYG I +I+LK       +AFV FED RDAEDAI GR+GY++   RLRVE    +GG                             LV+GLP S SWQDLKDHMR AGDVC++ V +D  GM G+V+Y   +DM+YA+RKLD ++FR +    SY+RV
Sbjct:   17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGG--------RGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 183          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS9_HUMAN (Splicing factor, arginine/serine-rich 9 OS=Homo sapiens GN=SFRS9 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.683e-34
Identity = 85/178 (47.75%), Postives = 108/178 (60.67%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVEL--AHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRV 619
            +YVGNLP D R +++EDLFYKYG I +I+LK       +AFV FED RDAEDAI GR+GY++   RLRVE    +GG                             LV+GLP S SWQDLKDHMR AGDVC++ V +D  GM   V+Y   +DM+YA+RKLD ++FR +    SY+RV
Sbjct:   16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGG--------RGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGM---VEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS4_MOUSE (Splicing factor, arginine/serine-rich 4 OS=Mus musculus GN=Sfrs4 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.459e-21
Identity = 61/167 (36.53%), Postives = 86/167 (51.50%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 583
            +Y+G L    R R+VE  F  YG I+++DLK      GY FVEF+D RDA+DA+   +G +  G R+ VE A G    G                             +V  L S  SWQDLKD+MR+AG+V ++   + R    G++++ SY DMK A+ KLD +E
Sbjct:    4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTE 164          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS4_HUMAN (Splicing factor, arginine/serine-rich 4 OS=Homo sapiens GN=SFRS4 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.459e-21
Identity = 61/167 (36.53%), Postives = 86/167 (51.50%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 583
            +Y+G L    R R+VE  F  YG I+++DLK      GY FVEF+D RDA+DA+   +G +  G R+ VE A G    G                             +V  L S  SWQDLKD+MR+AG+V ++   + R    G++++ SY DMK A+ KLD +E
Sbjct:    4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTE 164          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS6_HUMAN (Splicing factor, arginine/serine-rich 6 OS=Homo sapiens GN=SFRS6 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 58/173 (33.53%), Postives = 86/173 (49.71%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 583
            +Y+G L  + R ++++  F  YG ++++DLK      GY FVEFED RDA+DA+   +G    G R+ VE A G          G                             +V  L S  SWQDLKD MR+AG+V ++   ++R    G++++ SY DMK A+ KLD +E
Sbjct:    4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK-----NGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS6_BOVIN (Splicing factor, arginine/serine-rich 6 OS=Bos taurus GN=SFRS6 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 59/173 (34.10%), Postives = 85/173 (49.13%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 583
            +Y+G L  + R ++++  F  YG ++ IDLK      GY FVEFED RDA+DA+   +G    G R+ VE A G          G                             +V  L S  SWQDLKD MR+AG+V ++   ++R    G++++ SY DMK A+ KLD +E
Sbjct:    4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLK-----NGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS5_RAT (Splicing factor, arginine/serine-rich 5 OS=Rattus norvegicus GN=Sfrs5 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.933e-17
Identity = 60/169 (35.50%), Postives = 79/169 (46.75%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 583
            +++G L    R ++VE  F  YG I DIDLK      G+ FVEFED RDA+DA+   DG      R+ +E A        G                             +V  L S  SWQDLKD MR+AG+V F+   R +    G+V++ SY D+K AI KL   E
Sbjct:    6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS5_HUMAN (Splicing factor, arginine/serine-rich 5 OS=Homo sapiens GN=SFRS5 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.933e-17
Identity = 60/169 (35.50%), Postives = 79/169 (46.75%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 583
            +++G L    R ++VE  F  YG I DIDLK      G+ FVEFED RDA+DA+   DG      R+ +E A        G                             +V  L S  SWQDLKD MR+AG+V F+   R +    G+V++ SY D+K AI KL   E
Sbjct:    6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168          
The following BLAST results are available for this feature:
BLAST of FC923616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
SFRS1_XENTR7.174e-4045.45Splicing factor, arginine/serine-rich 1 OS=Xenopus... [more]
SFRS9_RAT2.022e-3448.88Splicing factor, arginine/serine-rich 9 OS=Rattus ... [more]
SFRS9_MOUSE3.449e-3448.31Splicing factor, arginine/serine-rich 9 OS=Mus mus... [more]
SFRS9_HUMAN7.683e-3447.75Splicing factor, arginine/serine-rich 9 OS=Homo sa... [more]
SFRS4_MOUSE7.459e-2136.53Splicing factor, arginine/serine-rich 4 OS=Mus mus... [more]
SFRS4_HUMAN7.459e-2136.53Splicing factor, arginine/serine-rich 4 OS=Homo sa... [more]
SFRS6_HUMAN6.981e-1933.53Splicing factor, arginine/serine-rich 6 OS=Homo sa... [more]
SFRS6_BOVIN1.191e-1834.10Splicing factor, arginine/serine-rich 6 OS=Bos tau... [more]
SFRS5_RAT2.933e-1735.50Splicing factor, arginine/serine-rich 5 OS=Rattus ... [more]
SFRS5_HUMAN2.933e-1735.50Splicing factor, arginine/serine-rich 5 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionC31707B03EF StrClemenN Citrus clementina cDNA clone C31707B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923616 ID=FC923616; Name=FC923616; organism=Citrus clementina; type=EST; length=634bp
GAATTCCGGAACTTACAATCGAGATTTCCACCTCTGAAATTCTAATTTCC
GATCAGAAAAAAAAACAAAAATGAGCAGCCGATCGAGCCGTACTCTTTAC
GTCGGAAACCTCCCGGGGGATACGAGAATGAGGGAAGTGGAAGACTTGTT
CTACAAGTATGGGCCTATTGTTGATATTGACTTGAAGATCCCACCAAGAC
CTCCGGGTTACGCCTTTGTTGAGTTTGAGGACTATCGGGACGCTGAGGAT
GCAATTCGCGGTCGAGATGGCTATAACTTTGATGGGTATCGATTGCGAGT
TGAACTAGCACATGGGGGTCGAAGACATTCGTCGTCGGTGGATCGTTATA
GCAGTTACAGCAGTGGAGGTAGCCGTGGAGTCTCCAGGCGCTCTGACTAT
CGTGTTTTGGTGACTGGATTACCTTCATCTGCTTCATGGCAAGACCTCAA
GGATCACATGCGTCGTGCTGGGGATGTCTGTTTTTCTCAAGTGTTTCGCG
ATCGTGGCGGTATGACGGGAATTGTGGATTACACTAGCTATGATGATATG
AAATATGCTATAAGGAAACTTGATCGCTCGGAGTTCCGGAATGCGTTTTC
CCGGTCCTATGTGCGGGTGAGGGAGTATGATTCA
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