FC923616
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 7.174e-40 Identity = 90/198 (45.45%), Postives = 114/198 (57.58%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH---------------------GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622 +YVGNLP D R +++ED+FYKYG I DIDLK P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE GG +V+GLP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+RKLD ++FR + +Y+RV+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 212
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS9_RAT (Splicing factor, arginine/serine-rich 9 OS=Rattus norvegicus GN=Sfrs9 PE=1 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.022e-34 Identity = 87/178 (48.88%), Postives = 111/178 (62.36%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVEL--AHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRV 619 +YVGNLP D R +++EDLFYKYG I +I+LK +AFV FED RDAEDAI GR+GY++ RLRVE A+GG LV+GLP S SWQDLKDHMR AGDVC++ V +D GM G+V+Y +DM+YA+RKLD ++FR + SY+RV Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRAYGG--------RGGWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS9_MOUSE (Splicing factor, arginine/serine-rich 9 OS=Mus musculus GN=Sfrs9 PE=1 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 3.449e-34 Identity = 86/178 (48.31%), Postives = 110/178 (61.80%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVEL--AHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRV 619 +YVGNLP D R +++EDLFYKYG I +I+LK +AFV FED RDAEDAI GR+GY++ RLRVE +GG LV+GLP S SWQDLKDHMR AGDVC++ V +D GM G+V+Y +DM+YA+RKLD ++FR + SY+RV Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGG--------RGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 183
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS9_HUMAN (Splicing factor, arginine/serine-rich 9 OS=Homo sapiens GN=SFRS9 PE=1 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 7.683e-34 Identity = 85/178 (47.75%), Postives = 108/178 (60.67%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVEL--AHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRV 619 +YVGNLP D R +++EDLFYKYG I +I+LK +AFV FED RDAEDAI GR+GY++ RLRVE +GG LV+GLP S SWQDLKDHMR AGDVC++ V +D GM V+Y +DM+YA+RKLD ++FR + SY+RV Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGG--------RGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGM---VEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS4_MOUSE (Splicing factor, arginine/serine-rich 4 OS=Mus musculus GN=Sfrs4 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 7.459e-21 Identity = 61/167 (36.53%), Postives = 86/167 (51.50%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 583 +Y+G L R R+VE F YG I+++DLK GY FVEF+D RDA+DA+ +G + G R+ VE A G G +V L S SWQDLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTE 164
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS4_HUMAN (Splicing factor, arginine/serine-rich 4 OS=Homo sapiens GN=SFRS4 PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 7.459e-21 Identity = 61/167 (36.53%), Postives = 86/167 (51.50%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 583 +Y+G L R R+VE F YG I+++DLK GY FVEF+D RDA+DA+ +G + G R+ VE A G G +V L S SWQDLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTE 164
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS6_HUMAN (Splicing factor, arginine/serine-rich 6 OS=Homo sapiens GN=SFRS6 PE=1 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19 Identity = 58/173 (33.53%), Postives = 86/173 (49.71%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 583 +Y+G L + R ++++ F YG ++++DLK GY FVEFED RDA+DA+ +G G R+ VE A G G +V L S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK-----NGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS6_BOVIN (Splicing factor, arginine/serine-rich 6 OS=Bos taurus GN=SFRS6 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18 Identity = 59/173 (34.10%), Postives = 85/173 (49.13%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 583 +Y+G L + R ++++ F YG ++ IDLK GY FVEFED RDA+DA+ +G G R+ VE A G G +V L S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLK-----NGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS5_RAT (Splicing factor, arginine/serine-rich 5 OS=Rattus norvegicus GN=Sfrs5 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.933e-17 Identity = 60/169 (35.50%), Postives = 79/169 (46.75%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 583 +++G L R ++VE F YG I DIDLK G+ FVEFED RDA+DA+ DG R+ +E A G +V L S SWQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS5_HUMAN (Splicing factor, arginine/serine-rich 5 OS=Homo sapiens GN=SFRS5 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.933e-17 Identity = 60/169 (35.50%), Postives = 79/169 (46.75%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 583 +++G L R ++VE F YG I DIDLK G+ FVEFED RDA+DA+ DG R+ +E A G +V L S SWQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168 The following BLAST results are available for this feature:
BLAST of FC923616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923616 ID=FC923616; Name=FC923616; organism=Citrus clementina; type=EST; length=634bpback to top |