FC923616
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS5_MOUSE (Splicing factor, arginine/serine-rich 5 OS=Mus musculus GN=Sfrs5 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.534e-17 Identity = 59/165 (35.76%), Postives = 78/165 (47.27%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 571 +++G L R ++VE F YG I DIDLK G+ FVEFED RDA+DA+ DG R+ +E A G +V L S SWQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRLAVADLGNDRRKCSTCKNRNRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKL 164
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SRP2_SCHPO (Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe GN=srp2 PE=1 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 3.964e-14 Identity = 51/160 (31.87%), Postives = 73/160 (45.62%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 574 L+VG +P ++ D F YG I+D L G+ FVE ED RDA D + G F G R+ VE A G +V L SWQDLKD MR+AG+ F+ R+ G G+V++++ +DM+ A+ L+ Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM-----NGFGFVEVEDARDARDIVNDFQGKEFMGSRIVVEPARG----ERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPG-AGVVEFSTEEDMRNALTSLN 155
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: RSP6_CAEEL (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans GN=rsp-6 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.476e-13 Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 316 +YVG LP D +E+E++F ++G I + + RPPG+AFVE++D RDAEDA+R DG G R RVEL+ G Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKV--WVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELSTG 76
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: RBP1_DROME (RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=1 SV=3) HSP 1 Score: 73.1738 bits (178), Expect = 1.275e-12 Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 316 +YVGNL E+E F KYGP+ ++ + PPG+AFVEFED RDAEDA R DG G R+RVE++ G Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNV--WVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVEMSSG 84
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS7_MOUSE (Splicing factor, arginine/serine-rich 7 OS=Mus musculus GN=Sfrs7 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11 Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 316 +YVGNL E+E F YGP+ + I PPG+AFVEFED RDAEDA+RG DG G R+RVEL+ G Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 113
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS7_HUMAN (Splicing factor, arginine/serine-rich 7 OS=Homo sapiens GN=SFRS7 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11 Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 316 +YVGNL E+E F YGP+ + I PPG+AFVEFED RDAEDA+RG DG G R+RVEL+ G Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 84
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS7_BOVIN (Splicing factor, arginine/serine-rich 7 OS=Bos taurus GN=SFRS7 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11 Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 316 +YVGNL E+E F YGP+ + I PPG+AFVEFED RDAEDA+RG DG G R+RVEL+ G Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 84
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS3_MOUSE (Splicing factor, arginine/serine-rich 3 OS=Mus musculus GN=Sfrs3 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.102e-11 Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 316 +YVGNL + E+E F YGP+ + + PPG+AFVEFED RDA DA+R DG G R+RVEL++G Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 83
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS3_HUMAN (Splicing factor, arginine/serine-rich 3 OS=Homo sapiens GN=SFRS3 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.102e-11 Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 316 +YVGNL + E+E F YGP+ + + PPG+AFVEFED RDA DA+R DG G R+RVEL++G Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 83
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS3_BOVIN (Splicing factor, arginine/serine-rich 3 OS=Bos taurus GN=SFRS3 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.102e-11 Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 316 +YVGNL + E+E F YGP+ + + PPG+AFVEFED RDA DA+R DG G R+RVEL++G Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 83 The following BLAST results are available for this feature:
BLAST of FC923616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923616 ID=FC923616; Name=FC923616; organism=Citrus clementina; type=EST; length=634bpback to top |