FC923618

Overview
NameFC923618
Unique NameFC923618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923618_ssr254 microsatellite FC923618_ssr254:254..263. BLAST: Citrus ESTs to Prunus persica proteins V1
FC923618_ssr46 microsatellite FC923618_ssr46:46..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14508 contig Ccv1_Contig14508:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_HUMAN (60S ribosomal protein L18 OS=Homo sapiens GN=RPL18 PE=1 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 4.730e-65
Identity = 125/188 (66.49%), Postives = 151/188 (80.32%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+PP+SLSR+ + MK  G+E+K AVVVGT+TDD+RV EVP LKV ALR T  AR+RI +AGG+ LTFDQLAL +P G  TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERARG+R SRG++
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_BOVIN (60S ribosomal protein L18 OS=Bos taurus GN=RPL18 PE=2 SV=3)

HSP 1 Score: 246.514 bits (628), Expect = 1.054e-64
Identity = 125/188 (66.49%), Postives = 150/188 (79.79%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+PP+SLSR+ + MK  G+E K AVVVGT+TDD+RV EVP LKV ALR +  AR+RI KAGG+ LTFDQLAL +P G  TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERARG+R SRG++
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGREGKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_DIACI (60S ribosomal protein L18 OS=Diaphorina citri GN=RpL18 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.066e-64
Identity = 118/188 (62.77%), Postives = 155/188 (82.45%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG--KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MG+D I     ++ +RT PKS D+YL+LLVKLYRFL RRT+S F+K+ILKRLFMSK+N+PPM++S++ +FMK   +E ++AV+VGT+ DD R++ +P L V ALR T+ AR+RI KAGGE +TFDQLALRAP G+NTVL++G +  REA KHFGPAPGVPHSHTK +VRSKGR+FERARG+R S+G++
Sbjct:    1 MGVD-ICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTVCALRVTDKARSRILKAGGEIITFDQLALRAPTGKNTVLMQGKRTGREANKHFGPAPGVPHSHTKAHVRSKGRQFERARGRRTSKGYK 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_LYSTE (60S ribosomal protein L18 OS=Lysiphlebus testaceipes GN=RpL18 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.230e-64
Identity = 122/188 (64.89%), Postives = 153/188 (81.38%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MGID I     +K +RT P+S DIYL+LLVK+YRFL RRT+S F ++ILKRLFMS++N PP+SL+R+ +FMK   +++ IAVVVGT+TDD R++E+P LKV ALR TE AR RI KAGGE +TF++LA  +P G  TVL++G +NAREAVKHFGPAPGVPHSHTKP VRSKGRKFERARG+R S G++
Sbjct:    1 MGID-INHKYDRKVRRTEPRSQDIYLRLLVKVYRFLARRTNSKFSRIILKRLFMSRINLPPISLARVCRFMKKESRKNSIAVVVGTITDDARIFEIPKLKVCALRITEKARGRILKAGGEIITFEKLAEISPTGNKTVLMQGRRNAREAVKHFGPAPGVPHSHTKPLVRSKGRKFERARGRRKSCGYK 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18B_XENLA (60S ribosomal protein L18-B OS=Xenopus laevis GN=rpl18-B PE=2 SV=4)

HSP 1 Score: 244.202 bits (622), Expect = 5.230e-64
Identity = 121/188 (64.36%), Postives = 152/188 (80.85%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MGID I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S+F++V+LKRLFMS+ N+PP+S+SRL + MK  G+E+K AVVVG +TDD+R++++P LKV AL+ T   R+RI K+GG+ +TFDQLAL AP GQNTVLL GP+ ARE  +HFG APG PHS TKPYV SKGRKFERARG+R SRG++
Sbjct:    1 MGID-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSMSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLSKGRKFERARGRRASRGYK 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_ORENI (60S ribosomal protein L18 OS=Oreochromis niloticus GN=rpl18 PE=2 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 1.522e-63
Identity = 120/188 (63.83%), Postives = 152/188 (80.85%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MG+D I   K +K  R  PKS DIYL+LLVKLYRFL RR+++ F++V+L+RLFMS+ N+PP+++SRL + MK  G+E+KIAVVVGTVTDD+R+ ++P LK+ ALR T+ AR RI KAGG+ +TFDQLAL +P GQ TVLL GP+ ARE  +HFG APG PHSHTKPYVRSKGRKFERARG+R S G++
Sbjct:    1 MGVD-IRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGYK 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_OREMO (60S ribosomal protein L18 OS=Oreochromis mossambicus GN=rpl18 PE=3 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 1.522e-63
Identity = 120/188 (63.83%), Postives = 152/188 (80.85%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MG+D I   K +K  R  PKS DIYL+LLVKLYRFL RR+++ F++V+L+RLFMS+ N+PP+++SRL + MK  G+E+KIAVVVGTVTDD+R+ ++P LK+ ALR T+ AR RI KAGG+ +TFDQLAL +P GQ TVLL GP+ ARE  +HFG APG PHSHTKPYVRSKGRKFERARG+R S G++
Sbjct:    1 MGVD-IRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGYK 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_DROME (60S ribosomal protein L18 OS=Drosophila melanogaster GN=RpL18 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.895e-62
Identity = 121/188 (64.36%), Postives = 148/188 (78.72%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG--KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MGID I     +K +RT PKS D+YL+LLVKLYRFL RRT+  F+++ILKRLFMSK+N+PP+SL R+ +F K   + +   VVVGTVTDD R+  VP L V AL  T+TAR RI KAGGE LTFDQLALR+P G+NT+LL+G + AR A KHFG APGVPHSHT+PYVRSKGRKFERARG+R+S G++
Sbjct:    1 MGID-INHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPLSLQRIARFFKAANQPESTIVVVGTVTDDARLLVVPKLTVCALHVTQTARERILKAGGEVLTFDQLALRSPTGKNTLLLQGRRTARTACKHFGKAPGVPHSHTRPYVRSKGRKFERARGRRSSCGYK 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18A_XENLA (60S ribosomal protein L18-A OS=Xenopus laevis GN=rpl18-A PE=2 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 6.393e-62
Identity = 119/188 (63.30%), Postives = 149/188 (79.26%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MGID I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S+F++V+LKRLFMS+ N+PP+S+SRL + MK   +E+K AVVVG +T D+R++++P L V AL+ T  AR+RI KAGG+ +TFDQLAL AP GQNTVLL GP+ ARE  +HFG AP  PHS TKPYV SKGRKFERARG+R SRG++
Sbjct:    1 MGID-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSMSRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVLSKGRKFERARGRRASRGYK 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_DROPS (60S ribosomal protein L18 OS=Drosophila pseudoobscura pseudoobscura GN=RpL18 PE=3 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 5.412e-61
Identity = 114/177 (64.41%), Postives = 143/177 (80.79%), Query Frame = 2
Query:  101 KKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG--KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            +K +RT PKS D+YL+LLVKLYRFL RRT+  F+++ILKRLFMSK+N+PP+SL R+ +F K   + +   VVVGTVTDD R+  VP L + AL  T+TAR RI KAGGE LTFDQLAL++P G+NT+LL+G + AR A KHFG APGVPHSHT+PYVRSKGRKFERARG+R+S G++
Sbjct:   12 RKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPLSLQRIARFFKAANQPESTVVVVGTVTDDARLLVVPKLTLCALHVTQTARERILKAGGEVLTFDQLALKSPTGKNTLLLQGKRTARTACKHFGKAPGVPHSHTRPYVRSKGRKFERARGRRSSCGYK 188          
The following BLAST results are available for this feature:
BLAST of FC923618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_HUMAN4.730e-6566.4960S ribosomal protein L18 OS=Homo sapiens GN=RPL18... [more]
RL18_BOVIN1.054e-6466.4960S ribosomal protein L18 OS=Bos taurus GN=RPL18 P... [more]
RL18_DIACI3.066e-6462.7760S ribosomal protein L18 OS=Diaphorina citri GN=R... [more]
RL18_LYSTE5.230e-6464.8960S ribosomal protein L18 OS=Lysiphlebus testaceip... [more]
RL18B_XENLA5.230e-6464.3660S ribosomal protein L18-B OS=Xenopus laevis GN=r... [more]
RL18_ORENI1.522e-6363.8360S ribosomal protein L18 OS=Oreochromis niloticus... [more]
RL18_OREMO1.522e-6363.8360S ribosomal protein L18 OS=Oreochromis mossambic... [more]
RL18_DROME4.895e-6264.3660S ribosomal protein L18 OS=Drosophila melanogast... [more]
RL18A_XENLA6.393e-6263.3060S ribosomal protein L18-A OS=Xenopus laevis GN=r... [more]
RL18_DROPS5.412e-6164.4160S ribosomal protein L18 OS=Drosophila pseudoobsc... [more]

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Properties
Property NameValue
Genbank descriptionC31707B05EF StrClemenN Citrus clementina cDNA clone C31707B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923618 ID=FC923618; Name=FC923618; organism=Citrus clementina; type=EST; length=719bp
GCTCCTTTTGAATAGCATTTGCTGTTTAGGGAAGCAGTCGCAGGGAGCAG
CAGCAGCAACAACAACAATGGGTATCGATTTGATAGCCGGTGGTAAGAGC
AAGAAGTCCAAGAGGACTGCCCCGAAATCGAACGATATCTATCTCAAGCT
TCTCGTCAAGCTGTACCGATTTCTCGTGAGGAGGACTGATAGCAATTTCG
ATAAGGTGATATTGAAGAGGCTCTTCATGAGCAAAGTCAACAAGCCTCCT
ATGTCTCTCTCTCGTTTGACTAAATTCATGAAGGGCAAGGAGGACAAGAT
TGCTGTGGTTGTTGGAACAGTCACTGATGATATTCGTGTGTATGAAGTTC
CTGCACTCAAGGTTACTGCACTGAGGTTCACAGAGACAGCAAGGGCAAGA
ATTGAGAAGGCAGGGGGAGAATGCTTGACATTTGACCAACTGGCTCTTCG
TGCTCCTTTGGGTCAGAACACGGTTCTCCTGAGAGGTCCGAAGAATGCTC
GTGAGGCTGTCAAGCACTTTGGACCTGCTCCTGGTGTACCACACAGCCAC
ACCAAACCCTATGTGCGATCTAAGGGAAGAAAATTTGAGAGGGCTAGAGG
AAAAAGGAACAGCAGAGGCTTCAGGGTTTGAGATGCAGAACTCATTCATA
AGGATACAGAGCAGCCGACCACCTTATGCAAATGTTGTGTTTTCTTTTTT
TCTCCTTGCTATTTTAATC
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