FC923618

Overview
NameFC923618
Unique NameFC923618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923618_ssr254 microsatellite FC923618_ssr254:254..263. BLAST: Citrus ESTs to Prunus persica proteins V1
FC923618_ssr46 microsatellite FC923618_ssr46:46..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14508 contig Ccv1_Contig14508:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_YEAST (60S ribosomal protein L18 OS=Saccharomyces cerevisiae GN=RPL18A PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.514e-58
Identity = 113/189 (59.79%), Postives = 144/189 (76.19%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 628
            MGID  +    +   RTAPKS+++YLKLLVKLY FL RRTD+ F+KV+LK LF+SK+N+PP+S+SR+ + +K  G  +K  VVVGTVTDD R++E P   V ALRFT  ARA+I KAGGEC+T DQLA+RAP GQNT++LRGP+N+REAV+HFG     PH    P + S GRKFERARG+R S+GF+V
Sbjct:    1 MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRILSTGRKFERARGRRRSKGFKV 186          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_SPOFR (60S ribosomal protein L18 OS=Spodoptera frugiperda GN=RpL18 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.514e-58
Identity = 118/184 (64.13%), Postives = 144/184 (78.26%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG--KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNS 613
            MGID I     +K +RT  KS D+YL+LLVKLYR+L RRT+S F+ +IL+RLFMS++N+PP+SLSRL + MK   +E  IAVVVGT+T+D+R+Y+VP + V AL  TE ARARI  AGGE LTFDQLALRAP G  TVLL+G +NAREAV+HFGPAPG P SHTKPYVR+KG   ERAR +R S
Sbjct:    1 MGID-INHKHDRKVRRTEVKSQDVYLRLLVKLYRYLARRTNSKFNTIILRRLFMSRINRPPLSLSRLARHMKKPTREGMIAVVVGTITNDVRLYKVPKMSVAALHVTEKARARILAAGGEILTFDQLALRAPTGAKTVLLQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--ERARPRRRS 181          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_ANOGA (60S ribosomal protein L18 OS=Anopheles gambiae GN=RpL18 PE=3 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 7.315e-58
Identity = 114/189 (60.32%), Postives = 148/189 (78.31%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDK-IAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MGID I     +K +RT PKS D+YL LLVKLYRFL RRT   F+K++++RLFMS+ N PPMSL+R+   MK  GK++K +AVV+GTVT+D+R+ +VP L V ALR T+ AR RI K GG+  TFDQLAL +P G+NTVL++G + ARE  KHFG APGVPHS+T+PYV+SKGRKFE+ARG+R+S G++
Sbjct:    1 MGID-INHKWDRKVRRTRPKSLDVYLSLLVKLYRFLYRRTKKKFNKIVMRRLFMSRTNHPPMSLNRVAHLMKLRGKDEKSVAVVIGTVTNDVRMMDVPKLNVCALRVTDKARQRILKNGGKIYTFDQLALLSPTGRNTVLMQGKRTAREVFKHFGRAPGVPHSNTRPYVQSKGRKFEKARGRRSSCGYK 188          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18B_SCHPO (60S ribosomal protein L18-B OS=Schizosaccharomyces pombe GN=rpl18b PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.315e-58
Identity = 121/191 (63.35%), Postives = 141/191 (73.82%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGK----EDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 628
            MGID I     +KS+R+ P S ++YLKLLVKLYRFL RRTDS F+K ILKRLF SK N+PP+S+S++      K    E K  V+VGTVTDD R+  VP L V ALRFT++ARARI KAGGE LT DQLALRAP G NTVLLRG K+AREA +HFG     PH H  PYVRS+GRKFERARG+R SR F+V
Sbjct:    1 MGID-IERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFERARGRRKSRAFKV 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18A_SCHPO (60S ribosomal protein L18-A OS=Schizosaccharomyces pombe GN=rpl18a PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.553e-58
Identity = 120/191 (62.83%), Postives = 142/191 (74.35%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGK----EDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 628
            MGID I     KKS+R+ P S ++YLKLLVKLYRFL RRTDS F+K ILKRLF SK N+PP+S+S++      K    ++K  VVVGTVTDD R+  VP L + ALRFT++ARARI KAGGE LT DQLALRAP G NTVL+RG K+AREA +HFG     PH H  PYVRS+GRKFERARG+R SR F+V
Sbjct:    1 MGID-IERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFERARGRRKSRAFKV 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_CAEBR (60S ribosomal protein L18 OS=Caenorhabditis briggsae GN=rpl-18 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.248e-57
Identity = 113/188 (60.11%), Postives = 144/188 (76.60%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MGID I+    + ++RTAPKS + YL+LL KLY FL RRT   F+ ++LKRL MS+ N+ P+SL+++ + +K  G E K  V + TVTDD R+YEVP + + AL  TE ARARI  AGGE +T DQLALR+P G+NTV L+GP++AREA KHFGPAPGVPHSHTKP+VRSKGRKFERARG+R SR ++
Sbjct:    1 MGID-ISHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKVARVVKQAGNEKKTVVTLSTVTDDARLYEVPKISLAALHVTEGARARILAAGGEIITLDQLALRSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPHVRSKGRKFERARGRRASRAYK 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_CAEEL (60S ribosomal protein L18 OS=Caenorhabditis elegans GN=rpl-18 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.630e-57
Identity = 113/188 (60.11%), Postives = 143/188 (76.06%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MGID I     + ++RTAPKS + YL+LL KLY FL RRT   F+ ++LKRL MS+ N+ P+SL++L + ++  G E+K  V + TVTDD R+Y VP + V AL  TE ARARI  AGGE +T DQLAL++P G+NTV L+GP++AREA KHFGPAPGVPHSHTKPYVRSKGRKFERARG+R SR ++
Sbjct:    1 MGID-INHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPYVRSKGRKFERARGRRASRAYK 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_AEDAE (60S ribosomal protein L18 OS=Aedes aegypti GN=RpL18 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.192e-57
Identity = 119/189 (62.96%), Postives = 146/189 (77.25%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GK-EDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MGID I     +K +RT PKS D+YL+LLVKLYRFL RRT   F+K+IL+RLFMS+ N+PP+SLSR+ K MK  GK E+ IAVVVGTVT+D R    P + V ALR TE AR RI K GG+  TFDQLAL AP G+NTVL++G + AREA  HFG APGVPHS+T+PYV+SKGRK+E+ARG+R+S GF+
Sbjct:    1 MGID-INHKWDRKVRRTKPKSLDVYLRLLVKLYRFLYRRTHKKFNKIILRRLFMSRTNQPPISLSRVAKLMKLRGKDENTIAVVVGTVTNDDRKLYCPKMNVCALRVTEKARERILKWGGKIYTFDQLALVAPTGKNTVLMQGERTAREAFTHFGRAPGVPHSNTRPYVQSKGRKYEKARGRRSSCGFK 188          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_PLUXY (60S ribosomal protein L18 OS=Plutella xylostella GN=RpL18 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.087e-57
Identity = 114/184 (61.96%), Postives = 144/184 (78.26%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG--KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNS 613
            MGID I     +K +RT  KS D+YL+LLVKLYR+L RRT++ F++++L+RLFMS++N+PP+SLSRL + MK   +E  IAVVVGT+T+D R+Y+VP + V AL  TE ARARI  AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P SHTKPYVRSKG   E+A+  R S
Sbjct:    1 MGID-INHKHDRKVRRTEVKSQDVYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPLSLSRLARHMKKPTREGLIAVVVGTITNDTRLYKVPKMTVAALHVTEKARARILDAGGEILTFDQLALRAPTGRKTVLIQGQRNAREAVRHFGPAPGAPRSHTKPYVRSKGH--EQAKPSRRS 181          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_BOMMO (60S ribosomal protein L18 OS=Bombyx mori GN=RpL18 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.379e-56
Identity = 113/184 (61.41%), Postives = 145/184 (78.80%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG--KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNS 613
            MGID I     +K +RT  KS DIYL+LLVKLYR+L RRT++ F++++L+RLFMS++N+PP+S+SRL + MK   +E  IAVVVGTVT+D+R+Y++P + V AL  TE ARARI  AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P SHTKPYVR+KG   E+AR  R +
Sbjct:    1 MGID-INHKHDRKVRRTEVKSQDIYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 181          
The following BLAST results are available for this feature:
BLAST of FC923618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_YEAST2.514e-5859.7960S ribosomal protein L18 OS=Saccharomyces cerevis... [more]
RL18_SPOFR2.514e-5864.1360S ribosomal protein L18 OS=Spodoptera frugiperda... [more]
RL18_ANOGA7.315e-5860.3260S ribosomal protein L18 OS=Anopheles gambiae GN=... [more]
RL18B_SCHPO7.315e-5863.3560S ribosomal protein L18-B OS=Schizosaccharomyces... [more]
RL18A_SCHPO9.553e-5862.8360S ribosomal protein L18-A OS=Schizosaccharomyces... [more]
RL18_CAEBR1.248e-5760.1160S ribosomal protein L18 OS=Caenorhabditis briggs... [more]
RL18_CAEEL3.630e-5760.1160S ribosomal protein L18 OS=Caenorhabditis elegan... [more]
RL18_AEDAE6.192e-5762.9660S ribosomal protein L18 OS=Aedes aegypti GN=RpL1... [more]
RL18_PLUXY8.087e-5761.9660S ribosomal protein L18 OS=Plutella xylostella G... [more]
RL18_BOMMO1.379e-5661.4160S ribosomal protein L18 OS=Bombyx mori GN=RpL18 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31707B05EF StrClemenN Citrus clementina cDNA clone C31707B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923618 ID=FC923618; Name=FC923618; organism=Citrus clementina; type=EST; length=719bp
GCTCCTTTTGAATAGCATTTGCTGTTTAGGGAAGCAGTCGCAGGGAGCAG
CAGCAGCAACAACAACAATGGGTATCGATTTGATAGCCGGTGGTAAGAGC
AAGAAGTCCAAGAGGACTGCCCCGAAATCGAACGATATCTATCTCAAGCT
TCTCGTCAAGCTGTACCGATTTCTCGTGAGGAGGACTGATAGCAATTTCG
ATAAGGTGATATTGAAGAGGCTCTTCATGAGCAAAGTCAACAAGCCTCCT
ATGTCTCTCTCTCGTTTGACTAAATTCATGAAGGGCAAGGAGGACAAGAT
TGCTGTGGTTGTTGGAACAGTCACTGATGATATTCGTGTGTATGAAGTTC
CTGCACTCAAGGTTACTGCACTGAGGTTCACAGAGACAGCAAGGGCAAGA
ATTGAGAAGGCAGGGGGAGAATGCTTGACATTTGACCAACTGGCTCTTCG
TGCTCCTTTGGGTCAGAACACGGTTCTCCTGAGAGGTCCGAAGAATGCTC
GTGAGGCTGTCAAGCACTTTGGACCTGCTCCTGGTGTACCACACAGCCAC
ACCAAACCCTATGTGCGATCTAAGGGAAGAAAATTTGAGAGGGCTAGAGG
AAAAAGGAACAGCAGAGGCTTCAGGGTTTGAGATGCAGAACTCATTCATA
AGGATACAGAGCAGCCGACCACCTTATGCAAATGTTGTGTTTTCTTTTTT
TCTCCTTGCTATTTTAATC
back to top