FC923618

Overview
NameFC923618
Unique NameFC923618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923618_ssr254 microsatellite FC923618_ssr254:254..263. BLAST: Citrus ESTs to Prunus persica proteins V1
FC923618_ssr46 microsatellite FC923618_ssr46:46..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14508 contig Ccv1_Contig14508:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_TAEAS (60S ribosomal protein L18 OS=Taenia asiatica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.569e-55
Identity = 110/174 (63.22%), Postives = 137/174 (78.74%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRK 583
            MGID+    K K  +R  PKS D+YL+L+VKLY+FL RRT S F+ ++ +RLFMS++N+ P+SLSRLT+ MK  G+E KIAVV+GTVT+DIR+ EVP L V ALR T  AR RI KAGG+ +T DQLAL+APLG+ TVLL+GP+ AREA +HFGPAPGVP SHTKPYV SK R+
Sbjct:    1 MGIDISHRNKRKVVRRN-PKSGDVYLRLMVKLYKFLARRTHSKFNNIVKRRLFMSRINRAPLSLSRLTRQMKKPGREGKIAVVIGTVTNDIRMREVPKLTVCALRVTAGARTRILKAGGKVMTVDQLALKAPLGKGTVLLQGPRKAREACRHFGPAPGVPGSHTKPYVISKSRE 173          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_THEPA (60S ribosomal protein L18 OS=Theileria parva GN=RPL18 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.077e-51
Identity = 112/188 (59.57%), Postives = 134/188 (71.28%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHF-GPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 628
            MGIDL+  G+ KK  R A  S + YL+LLVKLY+FL RRTD +F+KV+LKRL M +  K P+SLS+L+K M+ + D  AVVVGTVT+D R+  VP L V ALR TETAR RI  +GGE LTFDQL  R+P G    LLRG   AREAVKHF     G P    KPYVRSKGRKFE+ARG+R+SR F+V
Sbjct:    1 MGIDLVKAGRVKKPGRKALVSKNPYLRLLVKLYKFLSRRTDHSFNKVVLKRLLMPRRFKAPLSLSKLSKHMEKRPDNTAVVVGTVTNDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPTGSRCTLLRGATKAREAVKHFRNEVKGNP----KPYVRSKGRKFEKARGRRHSRAFKV 184          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_THEAN (60S ribosomal protein L18 OS=Theileria annulata GN=RPL18 PE=3 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.133e-49
Identity = 107/187 (57.22%), Postives = 132/187 (70.59%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHF-GPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MGIDL+  G+ KK  R A  S + YL+LLVKL++FL RRTD  F+K++LKRL M +  K P+SLS+L+K M+ + +  AVV+GTVT D R+  VP L V ALR TETAR RI  +GGE LTFDQL  R+P+G    LLRG   AREAVKHF     G P    KPYVRSKGRKFE+ARG+R+SR F+
Sbjct:    1 MGIDLVKAGRVKKPGRKALVSKNPYLRLLVKLFKFLARRTDFPFNKIVLKRLLMPRRYKAPLSLSKLSKHMESRPNNTAVVIGTVTSDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPIGGKCTLLRGETKAREAVKHFRNEVKGNP----KPYVRSKGRKFEKARGRRHSRAFK 183          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_TRYBB (60S ribosomal protein L18 OS=Trypanosoma brucei brucei GN=RPL18-A PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.448e-47
Identity = 102/194 (52.58%), Postives = 135/194 (69.59%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFM--------KGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MG+DL    K K+  R    S + Y+KLL+KLY+FL +RT+S F+K+I KRL  S+ N+ P+SLSR+   M        KGK+  IAV+VG V DD+R+  +PAL++ ALRF+++AR RI  AGGECLTFDQLA+ AP G+NT+LLRG K+ RE+VKHFG A GVP SH KP+V S+G+  ER R  +    FR
Sbjct:    1 MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLGKRTNSPFNKLIHKRLLKSRNNRAPISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHVSSRGK--ERQRSSKRRHAFR 191          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_DICDI (60S ribosomal protein L18 OS=Dictyostelium discoideum GN=rpl18 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.809e-47
Identity = 97/167 (58.08%), Postives = 121/167 (72.46%), Query Frame = 2
Query:  101 KKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG-KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERAR 598
            +K+ R    S + Y  LLVKLYRFL RRT+S F+KV+LKRL  +K N+PP+S+SR+   MK  K  KIAV VGTV DD R+ + P L V ALRFTETAR+RI KAGG+ L+FDQ AL  P G NT L++G   ARE  KHFG APG+P SH +PYVRS+G KF+R++
Sbjct:   11 RKTGRKTLVSQNPYHALLVKLYRFLARRTNSKFNKVVLKRLLQTKTNRPPVSISRIANLMKDRKSGKIAVCVGTVVDDERLLDCPKLTVCALRFTETARSRIVKAGGKALSFDQFALVRPRGNNTFLIKGVTKAREVYKHFGRAPGLPGSHARPYVRSEGIKFQRSK 177          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_TRYCR (60S ribosomal protein L18 OS=Trypanosoma cruzi GN=RPL18 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.388e-46
Identity = 100/194 (51.55%), Postives = 133/194 (68.56%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--------GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MG+DL    K K+  R    S + Y+KLL+KLY+FL +RT+S F+K++ +RL  S+ N+ P+SLSR+   MK        GK+  IAV+VG V DD+R+  +PAL+V ALRF+++AR RI  AGGECLTFDQLA+ AP G+NT LLRG K+ RE+VKHFG A GVP SH KP+  ++G+  ER R     R FR
Sbjct:    1 MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLAQRTNSAFNKLVHQRLLKSRSNRAPISLSRIAVCMKRKSVWLEKGKKAPIAVIVGDVLDDVRMARIPALRVCALRFSKSARERITGAGGECLTFDQLAMVAPTGKNTFLLRGRKSGRESVKHFG-AAGVPGSHAKPFTSNRGK--ERQRSSARRRAFR 191          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_LEIMA (60S ribosomal protein L18 OS=Leishmania major GN=RPL18-A PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.437e-45
Identity = 97/194 (50.00%), Postives = 131/194 (67.53%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--------GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MG+DL    K  +  R    S + Y+KLL+KLY+FL +RT S F+KV+ +RL  S+ N+ P+SLSR+   MK         K   IAVVVG V DD+R+  +PA++V ALRF+++AR  I  AGGECLTFDQLA+ AP G+NT LLRG K+ RE+V+HFG A GVP SH+KPY  ++G+  E  RG+R  R ++
Sbjct:    1 MGVDLTGISKKSRVIRHHTYSTNPYIKLLIKLYKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAKSKAAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLLRGRKSGRESVRHFG-ASGVPGSHSKPYATNRGK--ETKRGRRTGRSYK 191          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_SALSA (60S ribosomal protein L18 OS=Salmo salar GN=rpl18 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.176e-31
Identity = 83/171 (48.54%), Postives = 115/171 (67.25%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRR-TDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRS 571
            MGI +I   K +  +   P S DI   LLVK+YR    + + + F+KV+L+RLFMS+ ++PPMS+SR+ + MK  G+E++ AVVVGTVTDD+R++E+P LKV+AL+ T   R RI K   + + F  LAL AP  Q +VLL  P+NAR+  +HF  AP +P  HTKPYV S
Sbjct:    1 MGI-VIQHNKDRLVRPKQPLSEDI--TLLVKIYRLPGSKCSTAPFNKVVLRRLFMSRTHRPPMSVSRMIRKMKLPGRENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-VQIMRFVGLALAAPNRQKSVLLSAPRNARDVSRHFANAPSIP--HTKPYVLS 165          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_PIG (60S ribosomal protein L18 (Fragment) OS=Sus scrofa GN=RPL18 PE=3 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 2.076e-28
Identity = 66/105 (62.86%), Postives = 82/105 (78.10%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALR 376
            MG+D I   K +K +R  PKS DIYL+LLVKL RFL RRT+S F++V+LKRLFMS+ N+PP+SLSR+ + MK  G+E K AVVVGT+TDD+R  EVP LKV ALR
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLXRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMXRKMKLPGREGKTAVVVGTITDDVRFQEVPKLKVCALR 104          
The following BLAST results are available for this feature:
BLAST of FC923618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_TAEAS7.569e-5563.2260S ribosomal protein L18 OS=Taenia asiatica GN=RP... [more]
RL18_THEPA5.077e-5159.5760S ribosomal protein L18 OS=Theileria parva GN=RP... [more]
RL18_THEAN2.133e-4957.2260S ribosomal protein L18 OS=Theileria annulata GN... [more]
RL18_TRYBB4.448e-4752.5860S ribosomal protein L18 OS=Trypanosoma brucei br... [more]
RL18_DICDI5.809e-4758.0860S ribosomal protein L18 OS=Dictyostelium discoid... [more]
RL18_TRYCR8.388e-4651.5560S ribosomal protein L18 OS=Trypanosoma cruzi GN=... [more]
RL18_LEIMA5.437e-4550.0060S ribosomal protein L18 OS=Leishmania major GN=R... [more]
RL18_SALSA1.176e-3148.5460S ribosomal protein L18 OS=Salmo salar GN=rpl18 ... [more]
RL18_PIG2.076e-2862.8660S ribosomal protein L18 (Fragment) OS=Sus scrofa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31707B05EF StrClemenN Citrus clementina cDNA clone C31707B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923618 ID=FC923618; Name=FC923618; organism=Citrus clementina; type=EST; length=719bp
GCTCCTTTTGAATAGCATTTGCTGTTTAGGGAAGCAGTCGCAGGGAGCAG
CAGCAGCAACAACAACAATGGGTATCGATTTGATAGCCGGTGGTAAGAGC
AAGAAGTCCAAGAGGACTGCCCCGAAATCGAACGATATCTATCTCAAGCT
TCTCGTCAAGCTGTACCGATTTCTCGTGAGGAGGACTGATAGCAATTTCG
ATAAGGTGATATTGAAGAGGCTCTTCATGAGCAAAGTCAACAAGCCTCCT
ATGTCTCTCTCTCGTTTGACTAAATTCATGAAGGGCAAGGAGGACAAGAT
TGCTGTGGTTGTTGGAACAGTCACTGATGATATTCGTGTGTATGAAGTTC
CTGCACTCAAGGTTACTGCACTGAGGTTCACAGAGACAGCAAGGGCAAGA
ATTGAGAAGGCAGGGGGAGAATGCTTGACATTTGACCAACTGGCTCTTCG
TGCTCCTTTGGGTCAGAACACGGTTCTCCTGAGAGGTCCGAAGAATGCTC
GTGAGGCTGTCAAGCACTTTGGACCTGCTCCTGGTGTACCACACAGCCAC
ACCAAACCCTATGTGCGATCTAAGGGAAGAAAATTTGAGAGGGCTAGAGG
AAAAAGGAACAGCAGAGGCTTCAGGGTTTGAGATGCAGAACTCATTCATA
AGGATACAGAGCAGCCGACCACCTTATGCAAATGTTGTGTTTTCTTTTTT
TCTCCTTGCTATTTTAATC
back to top