FC923618
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_TAEAS (60S ribosomal protein L18 OS=Taenia asiatica GN=RPL18 PE=2 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 7.569e-55 Identity = 110/174 (63.22%), Postives = 137/174 (78.74%), Query Frame = 2 Query: 68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRK 583 MGID+ K K +R PKS D+YL+L+VKLY+FL RRT S F+ ++ +RLFMS++N+ P+SLSRLT+ MK G+E KIAVV+GTVT+DIR+ EVP L V ALR T AR RI KAGG+ +T DQLAL+APLG+ TVLL+GP+ AREA +HFGPAPGVP SHTKPYV SK R+ Sbjct: 1 MGIDISHRNKRKVVRRN-PKSGDVYLRLMVKLYKFLARRTHSKFNNIVKRRLFMSRINRAPLSLSRLTRQMKKPGREGKIAVVIGTVTNDIRMREVPKLTVCALRVTAGARTRILKAGGKVMTVDQLALKAPLGKGTVLLQGPRKAREACRHFGPAPGVPGSHTKPYVISKSRE 173
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_THEPA (60S ribosomal protein L18 OS=Theileria parva GN=RPL18 PE=3 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 5.077e-51 Identity = 112/188 (59.57%), Postives = 134/188 (71.28%), Query Frame = 2 Query: 68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHF-GPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 628 MGIDL+ G+ KK R A S + YL+LLVKLY+FL RRTD +F+KV+LKRL M + K P+SLS+L+K M+ + D AVVVGTVT+D R+ VP L V ALR TETAR RI +GGE LTFDQL R+P G LLRG AREAVKHF G P KPYVRSKGRKFE+ARG+R+SR F+V Sbjct: 1 MGIDLVKAGRVKKPGRKALVSKNPYLRLLVKLYKFLSRRTDHSFNKVVLKRLLMPRRFKAPLSLSKLSKHMEKRPDNTAVVVGTVTNDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPTGSRCTLLRGATKAREAVKHFRNEVKGNP----KPYVRSKGRKFEKARGRRHSRAFKV 184
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_THEAN (60S ribosomal protein L18 OS=Theileria annulata GN=RPL18 PE=3 SV=2) HSP 1 Score: 195.667 bits (496), Expect = 2.133e-49 Identity = 107/187 (57.22%), Postives = 132/187 (70.59%), Query Frame = 2 Query: 68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHF-GPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625 MGIDL+ G+ KK R A S + YL+LLVKL++FL RRTD F+K++LKRL M + K P+SLS+L+K M+ + + AVV+GTVT D R+ VP L V ALR TETAR RI +GGE LTFDQL R+P+G LLRG AREAVKHF G P KPYVRSKGRKFE+ARG+R+SR F+ Sbjct: 1 MGIDLVKAGRVKKPGRKALVSKNPYLRLLVKLFKFLARRTDFPFNKIVLKRLLMPRRYKAPLSLSKLSKHMESRPNNTAVVIGTVTSDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPIGGKCTLLRGETKAREAVKHFRNEVKGNP----KPYVRSKGRKFEKARGRRHSRAFK 183
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_TRYBB (60S ribosomal protein L18 OS=Trypanosoma brucei brucei GN=RPL18-A PE=2 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 4.448e-47 Identity = 102/194 (52.58%), Postives = 135/194 (69.59%), Query Frame = 2 Query: 68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFM--------KGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625 MG+DL K K+ R S + Y+KLL+KLY+FL +RT+S F+K+I KRL S+ N+ P+SLSR+ M KGK+ IAV+VG V DD+R+ +PAL++ ALRF+++AR RI AGGECLTFDQLA+ AP G+NT+LLRG K+ RE+VKHFG A GVP SH KP+V S+G+ ER R + FR Sbjct: 1 MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLGKRTNSPFNKLIHKRLLKSRNNRAPISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHVSSRGK--ERQRSSKRRHAFR 191
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_DICDI (60S ribosomal protein L18 OS=Dictyostelium discoideum GN=rpl18 PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 5.809e-47 Identity = 97/167 (58.08%), Postives = 121/167 (72.46%), Query Frame = 2 Query: 101 KKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG-KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERAR 598 +K+ R S + Y LLVKLYRFL RRT+S F+KV+LKRL +K N+PP+S+SR+ MK K KIAV VGTV DD R+ + P L V ALRFTETAR+RI KAGG+ L+FDQ AL P G NT L++G ARE KHFG APG+P SH +PYVRS+G KF+R++ Sbjct: 11 RKTGRKTLVSQNPYHALLVKLYRFLARRTNSKFNKVVLKRLLQTKTNRPPVSISRIANLMKDRKSGKIAVCVGTVVDDERLLDCPKLTVCALRFTETARSRIVKAGGKALSFDQFALVRPRGNNTFLIKGVTKAREVYKHFGRAPGLPGSHARPYVRSEGIKFQRSK 177
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_TRYCR (60S ribosomal protein L18 OS=Trypanosoma cruzi GN=RPL18 PE=3 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 8.388e-46 Identity = 100/194 (51.55%), Postives = 133/194 (68.56%), Query Frame = 2 Query: 68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--------GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625 MG+DL K K+ R S + Y+KLL+KLY+FL +RT+S F+K++ +RL S+ N+ P+SLSR+ MK GK+ IAV+VG V DD+R+ +PAL+V ALRF+++AR RI AGGECLTFDQLA+ AP G+NT LLRG K+ RE+VKHFG A GVP SH KP+ ++G+ ER R R FR Sbjct: 1 MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLAQRTNSAFNKLVHQRLLKSRSNRAPISLSRIAVCMKRKSVWLEKGKKAPIAVIVGDVLDDVRMARIPALRVCALRFSKSARERITGAGGECLTFDQLAMVAPTGKNTFLLRGRKSGRESVKHFG-AAGVPGSHAKPFTSNRGK--ERQRSSARRRAFR 191
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_LEIMA (60S ribosomal protein L18 OS=Leishmania major GN=RPL18-A PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 5.437e-45 Identity = 97/194 (50.00%), Postives = 131/194 (67.53%), Query Frame = 2 Query: 68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--------GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625 MG+DL K + R S + Y+KLL+KLY+FL +RT S F+KV+ +RL S+ N+ P+SLSR+ MK K IAVVVG V DD+R+ +PA++V ALRF+++AR I AGGECLTFDQLA+ AP G+NT LLRG K+ RE+V+HFG A GVP SH+KPY ++G+ E RG+R R ++ Sbjct: 1 MGVDLTGISKKSRVIRHHTYSTNPYIKLLIKLYKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAKSKAAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLLRGRKSGRESVRHFG-ASGVPGSHSKPYATNRGK--ETKRGRRTGRSYK 191
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_SALSA (60S ribosomal protein L18 OS=Salmo salar GN=rpl18 PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.176e-31 Identity = 83/171 (48.54%), Postives = 115/171 (67.25%), Query Frame = 2 Query: 68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRR-TDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRS 571 MGI +I K + + P S DI LLVK+YR + + + F+KV+L+RLFMS+ ++PPMS+SR+ + MK G+E++ AVVVGTVTDD+R++E+P LKV+AL+ T R RI K + + F LAL AP Q +VLL P+NAR+ +HF AP +P HTKPYV S Sbjct: 1 MGI-VIQHNKDRLVRPKQPLSEDI--TLLVKIYRLPGSKCSTAPFNKVVLRRLFMSRTHRPPMSVSRMIRKMKLPGRENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-VQIMRFVGLALAAPNRQKSVLLSAPRNARDVSRHFANAPSIP--HTKPYVLS 165
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_PIG (60S ribosomal protein L18 (Fragment) OS=Sus scrofa GN=RPL18 PE=3 SV=3) HSP 1 Score: 125.946 bits (315), Expect = 2.076e-28 Identity = 66/105 (62.86%), Postives = 82/105 (78.10%), Query Frame = 2 Query: 68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALR 376 MG+D I K +K +R PKS DIYL+LLVKL RFL RRT+S F++V+LKRLFMS+ N+PP+SLSR+ + MK G+E K AVVVGT+TDD+R EVP LKV ALR Sbjct: 1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLXRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMXRKMKLPGREGKTAVVVGTITDDVRFQEVPKLKVCALR 104 The following BLAST results are available for this feature:
BLAST of FC923618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923618 ID=FC923618; Name=FC923618; organism=Citrus clementina; type=EST; length=719bpback to top |