FC923622

Overview
NameFC923622
Unique NameFC923622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923622_ssr114 microsatellite FC923622_ssr114:114..125. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9438 contig Ccv1_Contig9438:3..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP2_ARATH (Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.988e-45
Identity = 92/189 (48.68%), Postives = 127/189 (67.20%), Query Frame = 2
Query:  161 MTIKSIIHDMM-------------WRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            M++KSI+ D+              W +S  +  D     +   + P   WA+LP ELL +I+ ++E +++AWP+R +VV+CA VC+SWR IT EIV++PE  G LTFPIS+KQPGPRD  +QCFIKRNR+T TY LY  L  +  ++ K LLAAR+ RRATCTD+IISL + +  + SSTY+G+LRS F
Sbjct:    1 MSLKSILRDLKEVRDGLGGISKRSWSKSSHIAPDQTTPPL--DNIPQSPWASLPPELLHDIIWRVEESETAWPARAAVVSCASVCKSWRGITMEIVRIPEQCGKLTFPISLKQPGPRDSPIQCFIKRNRATATYILYYGLMPSETENDKLLLAARRIRRATCTDFIISLSAKNFSRSSSTYVGKLRSGF 187          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP7_ORYSJ (Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.008e-43
Identity = 85/165 (51.52%), Postives = 119/165 (72.12%), Query Frame = 2
Query:  197 RRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADD-GKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            R   + +G +++ D     +    WA LP ELLR+++ ++E  DS WPSR+ VVACA VC +WR + K+IV+ PE  G LTFP+S+KQPGPRD ++QCFIKR++S  TYHLYL L++A+ D+ GKFLL+A++ RR T TDYIIS+ S +  + SS Y+G+LRS F
Sbjct:   32 RHRGKSIGPSSELDDTPVVAQQSKWAGLPPELLRDVMKRLEEDDSNWPSRKDVVACASVCTTWRDMCKDIVRNPEFCGKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYHLYLCLSSAVLDETGKFLLSAKRSRRTTHTDYIISMDSKNISRSSSGYIGKLRSNF 196          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP3_ORYSJ (Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.116e-42
Identity = 82/145 (56.55%), Postives = 109/145 (75.17%), Query Frame = 2
Query:  257 PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNAL-ADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            P   WA+LP ELLRE++ ++EA +S WPSRR+VV  A VCR+WR + KE V  PE  G LTFP+S+KQPGPRD ++QC+IKRNRS  TYHLYL L+N + A+ GKF+LAA++ R+ TCT+Y IS+ S +  + S T +G+LRS F
Sbjct:   55 PESRWASLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFPVSIKQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMVSGNISRSSRTNIGKLRSNF 199          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP12_ORYSJ (Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.903e-42
Identity = 81/141 (57.45%), Postives = 112/141 (79.43%), Query Frame = 2
Query:  269 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            W  LP ELLR+++ ++E  +S WPSR+ VVACA VCR+WR I K+IV+ PE+ G LTFP+S+KQPGPRD L+QCFIKR++S  TY+LYL L+ A L+++GKFLLAA++ RRAT T+YIIS+ S +  + S+ Y+G++RS F
Sbjct:   59 WVGLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSLKQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVDSKNISRSSNGYVGKMRSNF 199          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP6_ARATH (Tubby-like F-box protein 6 OS=Arabidopsis thaliana GN=TULP6 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.239e-42
Identity = 81/141 (57.45%), Postives = 107/141 (75.89%), Query Frame = 2
Query:  269 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALA-DDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            W +LP ELL +I+ +IE+  S WP RR VVACA VC+SWR +TKE+VKVPELSG +TFPIS++QPGPRD  +QCFIKR R+T  Y LYL L+ AL+ D  K LL+A++ RRAT  ++++SL  +D  + SS Y+G+LRS F
Sbjct:   69 WVDLPPELLLDIIQRIESEQSLWPGRRDVVACASVCKSWREMTKEVVKVPELSGLITFPISLRQPGPRDAPIQCFIKRERATGIYRLYLGLSPALSGDKSKLLLSAKRVRRATGAEFVVSLSGNDFSRSSSNYIGKLRSNF 209          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP10_ARATH (Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.537e-42
Identity = 80/144 (55.56%), Postives = 114/144 (79.17%), Query Frame = 2
Query:  260 TCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            T  WANLP ELL +++ ++E ++S WP+R+ VVACA VCRSWR + +EIV  PE+ G LTFP+S+KQPGPRD ++QCFIKR++S  T+HL+L L+ A L ++GKFLL+A++ RR T T+YIIS+ +D+  + S++YLG+LRS F
Sbjct:   56 TSRWANLPPELLFDVIKRLEESESNWPARKHVVACASVCRSWRAMCQEIVLGPEICGKLTFPVSLKQPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVENGKFLLSAKRTRRTTRTEYIISMDADNISRSSNSYLGKLRSNF 199          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP5_ORYSJ (Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.611e-41
Identity = 80/141 (56.74%), Postives = 110/141 (78.01%), Query Frame = 2
Query:  269 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNAL-ADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            WANLP ELL +++ ++EA+++ WP+RR VVACA VCRSWR +TKE+VK  E  G +TFPIS+KQPGPR++ +QCF++R+R+T TY LYL L+ +L  ++ K LLAARK RRAT T ++ISL S+D    SSTY+G+L+  F
Sbjct:   68 WANLPPELLLDVIQRVEASEATWPARRQVVACAAVCRSWREVTKEVVKTLEECGRITFPISLKQPGPREHPVQCFVRRDRATSTYLLYLGLSPSLHGENDKLLLAARKIRRATRTSFVISLVSNDFSLSSSTYVGKLKPNF 208          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP1_ORYSJ (Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.844e-38
Identity = 74/141 (52.48%), Postives = 102/141 (72.34%), Query Frame = 2
Query:  269 WANLPQELLREILAKIEAADSA-WPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            WA L  EL+ E++ ++EA+    WP+R+ VV+CA VCR WR     +V+ P  SG +TFP S+KQPGPR++ +QCFIKRN+   T++LYL LTNA  D GKFL+AAR+ RR   T+YI+SL +DD  +GS+ Y+G+LRS F
Sbjct:   34 WARLLPELMSEVVRRVEASGGERWPARKDVVSCACVCRRWRDAAVAVVRPPAESGKITFPSSLKQPGPREFPMQCFIKRNKKNSTFYLYLGLTNATVDKGKFLMAARRFRRGPHTEYIVSLDADDLSQGSNAYMGKLRSDF 174          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP9_ORYSJ (Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica GN=TULP9 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.144e-37
Identity = 75/140 (53.57%), Postives = 95/140 (67.86%), Query Frame = 2
Query:  269 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            W+ L  ELL EI+ +++A    WP RR VVACA VCR WR     +V+ P   G +TFP S+KQPGPRD  + CFI+RN+   T++LYLSLT AL D GKFLLAAR+ R    T+YIIS   DD   GS++Y+G+LRS F
Sbjct:   52 WSRLLPELLTEIMRRVDAGAERWPPRRDVVACACVCRRWRDAAVSVVRPPLECGRITFPSSLKQPGPRDAPMHCFIRRNKKNSTFYLYLSLTQALTDKGKFLLAARRFRNGAHTEYIISYDCDDLFPGSNSYVGKLRSDF 191          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.540e-36
Identity = 73/140 (52.14%), Postives = 93/140 (66.43%), Query Frame = 2
Query:  269 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            W+ L  +LL +IL  +EA    WP RR VVACA VCR WR +   +V+ P  SG +TFP S+KQPGPRD  +QCFIKRN+   T+ LYL LT  L DD KFLLAAR+CRR    +Y I+++SD    GS + +G L+S F
Sbjct:   51 WSALVPDLLADILRCVEAGSERWPPRRDVVACASVCRRWRDVAVAVVQPPLESGKITFPSSLKQPGPRDAPMQCFIKRNKKNSTFFLYLGLTQELTDDEKFLLAARRCRRGLHKEYAITINSDGLFHGSQSCVGNLKSNF 190          
The following BLAST results are available for this feature:
BLAST of FC923622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
TLP2_ARATH6.988e-4548.68Tubby-like F-box protein 2 OS=Arabidopsis thaliana... [more]
TLP7_ORYSJ5.008e-4351.52Tubby-like F-box protein 7 OS=Oryza sativa subsp. ... [more]
TLP3_ORYSJ1.116e-4256.55Tubby-like F-box protein 3 OS=Oryza sativa subsp. ... [more]
TLP12_ORYSJ1.903e-4257.45Tubby-like F-box protein 12 OS=Oryza sativa subsp.... [more]
TLP6_ARATH4.239e-4257.45Tubby-like F-box protein 6 OS=Arabidopsis thaliana... [more]
TLP10_ARATH5.537e-4255.56Tubby-like F-box protein 10 OS=Arabidopsis thalian... [more]
TLP5_ORYSJ1.611e-4156.74Tubby-like F-box protein 5 OS=Oryza sativa subsp. ... [more]
TLP1_ORYSJ2.844e-3852.48Tubby-like F-box protein 1 OS=Oryza sativa subsp. ... [more]
TLP9_ORYSJ3.144e-3753.57Tubby-like F-box protein 9 OS=Oryza sativa subsp. ... [more]
TLP2_ORYSJ4.540e-3652.14Tubby-like F-box protein 2 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionC31707B09EF StrClemenN Citrus clementina cDNA clone C31707B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923622 ID=FC923622; Name=FC923622; organism=Citrus clementina; type=EST; length=714bp
GAAAAGCACAAGCACTGCTGCTCTCGACCCTAATCTCTATCTGAATTCTC
ATCATCTCTCAAGTATTCTTCAGTCACCCATCAACCTCACCAACAAATCA
TAAAGCCTTCTCAAAATAAATAAATATTGAAATTAGAATTAAATCTCGAC
GGCTTCGTGTATGACAATAAAAAGCATAATTCATGACATGATGTGGCGGA
GGTCGCACCGCGTGGTCGGCGACGCGGCGGACCACGACATGGCCGGCGGC
TCTTCTCCTACGTGCTGCTGGGCGAACCTGCCGCAGGAGCTGCTGAGAGA
GATTCTGGCCAAAATCGAGGCGGCGGATAGCGCGTGGCCGTCACGGAGAA
GCGTTGTCGCGTGCGCTGGAGTTTGTCGGAGCTGGAGACGGATCACTAAA
GAGATTGTCAAAGTTCCTGAACTTTCCGGTTACTTGACTTTCCCCATCTC
CGTCAAACAGCCTGGTCCAAGGGATTATCTCCTCCAGTGCTTTATAAAGC
GAAATCGGTCCACCCAAACATATCACCTTTACCTCAGTTTAACTAATGCA
CTAGCAGACGATGGAAAGTTCCTTCTTGCTGCCCGCAAGTGTAGACGTGC
CACCTGTACAGATTATATTATCTCTTTACATTCTGATGATATNGTCAAAG
GGAGCAGCACTTATCTTGGGGAACTGAGATCAATTTTTTAGGAACCAGNT
CATAGTCTATGATG
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