FC923622

Overview
NameFC923622
Unique NameFC923622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923622_ssr114 microsatellite FC923622_ssr114:114..125. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9438 contig Ccv1_Contig9438:3..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP7_ARATH (Tubby-like F-box protein 7 OS=Arabidopsis thaliana GN=TULP7 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.011e-35
Identity = 75/151 (49.67%), Postives = 100/151 (66.23%), Query Frame = 2
Query:  236 DMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            +MAG SS    W+ +  ELL EI+ ++E  +  WP RR VV CA V + WR IT +  +    SG +TFP  +K PGPRD+  QC IKRN+ T T++LYL+LT +  D GKFLLAAR+ R    T+YIISL +DD  +GS+ Y+G+LRS F
Sbjct:   37 NMAGSSS----WSAMLPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLKLPGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISLDADDFSQGSNAYVGKLRSDF 183          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP10_ORYSJ (Tubby-like F-box protein 10 OS=Oryza sativa subsp. japonica GN=TULP10 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.907e-34
Identity = 67/141 (47.52%), Postives = 97/141 (68.79%), Query Frame = 2
Query:  269 WANLPQELLREILAKIEAADSA-WPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            W  L  EL+ E++ ++EA+    WP+R+ +V+CA VCR WR     +V+    SG +TFP S+KQPGP+D+ +QCF+KRN+    ++LYL L N   D GKFL+AAR+ RR   T+Y+ISL +DD  +GS+ Y+G+LRS F
Sbjct:   24 WGGLLPELVEEVVRRVEASGGERWPARKDLVSCACVCRRWREAAAAVVRPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKKSMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDF 164          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP4_ARATH (Putative Tubby-like protein 4 OS=Arabidopsis thaliana GN=TULP4 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.949e-27
Identity = 52/86 (60.47%), Postives = 71/86 (82.56%), Query Frame = 2
Query:  278 LPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYL 535
            +P ELLR++L +IE ++  WPSR++VV+C GVC++WR+I KEIV VPE+S   TFPIS+KQPGP   L+QC++KRNRS QT++LYL
Sbjct:    1 MPPELLRDVLMRIERSEDTWPSRKNVVSCVGVCKNWRQIFKEIVNVPEVSSKFTFPISLKQPGPGGSLVQCYVKRNRSNQTFYLYL 86          
The following BLAST results are available for this feature:
BLAST of FC923622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
TLP7_ARATH1.011e-3549.67Tubby-like F-box protein 7 OS=Arabidopsis thaliana... [more]
TLP10_ORYSJ1.907e-3447.52Tubby-like F-box protein 10 OS=Oryza sativa subsp.... [more]
TLP4_ARATH2.949e-2760.47Putative Tubby-like protein 4 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC31707B09EF StrClemenN Citrus clementina cDNA clone C31707B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923622 ID=FC923622; Name=FC923622; organism=Citrus clementina; type=EST; length=714bp
GAAAAGCACAAGCACTGCTGCTCTCGACCCTAATCTCTATCTGAATTCTC
ATCATCTCTCAAGTATTCTTCAGTCACCCATCAACCTCACCAACAAATCA
TAAAGCCTTCTCAAAATAAATAAATATTGAAATTAGAATTAAATCTCGAC
GGCTTCGTGTATGACAATAAAAAGCATAATTCATGACATGATGTGGCGGA
GGTCGCACCGCGTGGTCGGCGACGCGGCGGACCACGACATGGCCGGCGGC
TCTTCTCCTACGTGCTGCTGGGCGAACCTGCCGCAGGAGCTGCTGAGAGA
GATTCTGGCCAAAATCGAGGCGGCGGATAGCGCGTGGCCGTCACGGAGAA
GCGTTGTCGCGTGCGCTGGAGTTTGTCGGAGCTGGAGACGGATCACTAAA
GAGATTGTCAAAGTTCCTGAACTTTCCGGTTACTTGACTTTCCCCATCTC
CGTCAAACAGCCTGGTCCAAGGGATTATCTCCTCCAGTGCTTTATAAAGC
GAAATCGGTCCACCCAAACATATCACCTTTACCTCAGTTTAACTAATGCA
CTAGCAGACGATGGAAAGTTCCTTCTTGCTGCCCGCAAGTGTAGACGTGC
CACCTGTACAGATTATATTATCTCTTTACATTCTGATGATATNGTCAAAG
GGAGCAGCACTTATCTTGGGGAACTGAGATCAATTTTTTAGGAACCAGNT
CATAGTCTATGATG
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