FC923627

Overview
NameFC923627
Unique NameFC923627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15394 contig Ccv1_Contig15394:6..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS32_XENLA (40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-B PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.842e-89
Identity = 169/209 (80.86%), Postives = 178/209 (85.17%), Query Frame = 1
Query:  103 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            MA Q+SKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP            QNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WDP+GK  P  PLPD V+
Sbjct:    1 MAAQMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVS 209          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_PONAB (40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.848e-89
Identity = 169/209 (80.86%), Postives = 177/209 (84.69%), Query Frame = 1
Query:  103 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP            QNVLGEKGRRIRELT+VVQKRF FPE SVELYAE+V  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WDP GK  P  PLPD V+
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEEVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVS 209          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_ICTPU (40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.080e-88
Identity = 168/209 (80.38%), Postives = 177/209 (84.69%), Query Frame = 1
Query:  103 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            MA QISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP            QNVLGEKGRRIRELT+VVQKRF FP  SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WDP+GK  P  PLPD V+
Sbjct:    1 MAVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVS 209          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_MANSE (40S ribosomal protein S3 OS=Manduca sexta GN=RpS3 PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.366e-83
Identity = 158/202 (78.22%), Postives = 167/202 (82.67%), Query Frame = 1
Query:  115 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPD 720
            ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP            Q+VLGEKGRRIRELTSVVQKRF  PE SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR QRAKSMKF DG M+ SG P N+Y+++A RHVLLRQGVLGIKVKIML WD  GK  P  P PD
Sbjct:    6 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPD 207          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_DROME (40S ribosomal protein S3 OS=Drosophila melanogaster GN=RpS3 PE=1 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.411e-80
Identity = 152/205 (74.15%), Postives = 167/205 (81.46%), Query Frame = 1
Query:  115 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP            Q VLGEKGRRIRELT++VQKRF F    +ELYAEKV  RGLCAIAQAESLRYKL GGLAVRRACYGVLR+IMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG P N+Y+++A RHVLLRQGVLGIKVK+ML +DP  K  P  PLPD V+
Sbjct:    7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVS 211          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_SCHPO (40S ribosomal protein S3 OS=Schizosaccharomyces pombe GN=rps3 PE=1 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.120e-77
Identity = 149/207 (71.98%), Postives = 168/207 (81.16%), Query Frame = 1
Query:  106 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLV 726
            A  ISKKRKFVADGVF+AELNE  TREL+E+GYSG EVRVTP            Q+VLGEKGRRIRELT++VQKRFKF EN+VELYAEKV NRGLCA+AQ ESLRYKLL GLAVRRA YGVLR++ME+GAKGCEV++SGKLRA RAKSMKF DG+M+ SGQP  ++IDSA RHVLLRQGVLG+KVKIML   P  K      LPD+V
Sbjct:    4 AFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIML---PEPKTRQKKSLPDIV 207          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_CAEEL (40S ribosomal protein S3 OS=Caenorhabditis elegans GN=rps-3 PE=1 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.603e-76
Identity = 146/204 (71.57%), Postives = 163/204 (79.90%), Query Frame = 1
Query:  115 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLV 726
            ++KK+K V  G+F AELN  L +ELAEDGYSGVEVR TP            QNVLGE+GRRI+ELTSVVQKRF F E SVELYAEKV+NRGLCA+AQ ESLRYKL+GGLAVRRACYGVLRFIMESGA+G EVIVSGKLR QRAK+MKF DG M+ SG PVN+YI  AVRHV LRQGV+GIKVKIML +DP G+  P   LPD V
Sbjct:    7 VTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHV 210          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_YEAST (40S ribosomal protein S3 OS=Saccharomyces cerevisiae GN=RPS3 PE=1 SV=5)

HSP 1 Score: 268.47 bits (685), Expect = 2.672e-71
Identity = 137/209 (65.55%), Postives = 164/209 (78.47%), Query Frame = 1
Query:  103 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            M   ISKKRK VADGVF+AELNE  TRELAE+GYSGVEVRVTP            Q+VLGE GRRI ELT +VQKRFK+   ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA YGV+R++MESGAKGCEV+VSGKLRA RAK+MKF DG+++ SGQPVN++ID+A RHVL+RQGVLGIKVKIM   DP   +     LPD VT
Sbjct:    1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIMR--DPAKSRTGPKALPDAVT 207          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_DICDI (40S ribosomal protein S3 OS=Dictyostelium discoideum GN=rps3 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.049e-64
Identity = 130/208 (62.50%), Postives = 153/208 (73.56%), Query Frame = 1
Query:  112 QISKKRKFVADGVFFAELNEVLTRELAED-GYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGK--QXPTTPLPDLV 726
            QISKKRKFVADGVF AELNE+ TRE  +D GYSGVE++ +P            Q V+G   RRI+EL S+VQKRF F E +V L+AEK+ NRGLCA+AQAESL+ KLL GL VR+ACY ++  IM  GAKGCEVIVSGKLRAQRAKSMKF+DGYM+ SGQP  ++ID A RHVLLRQG LG+KV IML +D   K       P PD+V
Sbjct:    6 QISKKRKFVADGVFHAELNELFTREFNKDEGYSGVELKTSPGLTEIIIRASKTQAVVGPNARRIQELCSLVQKRFNFKEGTVVLFAEKILNRGLCAVAQAESLKLKLLAGLPVRKACYAIVHQIMTRGAKGCEVIVSGKLRAQRAKSMKFRDGYMIKSGQPSKDFIDFACRHVLLRQGTLGVKVAIMLPYDETRKIHGACNIPQPDVV 213          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_ENCCU (40S ribosomal protein S3 OS=Encephalitozoon cuniculi GN=RPS3 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.270e-40
Identity = 84/213 (39.44%), Postives = 130/213 (61.03%), Query Frame = 1
Query:  100 KMATQISKKR---KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            K A ++S  +   +F+ +G+  AEL E   + L  +G+S +E+R+                 +GEK  R+R+   +  +R + P+ SVE+  EKV+ +GLCA+ QA  +R K+LGG+  RRA    L+    + A+GC++IVSGKL+ QRAKS+KF+DG ++ SG  V +YI++    V  +QGV+GI+V+IML +DP G   P  PLPD +T
Sbjct:    8 KFALEMSSDQVLERFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQFQHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHAKAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIMLPYDPEGVLGPNYPLPDRIT 220          
The following BLAST results are available for this feature:
BLAST of FC923627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS32_XENLA2.842e-8980.8640S ribosomal protein S3-B OS=Xenopus laevis GN=rp... [more]
RS3_PONAB4.848e-8980.8640S ribosomal protein S3 OS=Pongo abelii GN=RPS3 P... [more]
RS3_ICTPU1.080e-8880.3840S ribosomal protein S3 OS=Ictalurus punctatus GN... [more]
RS3_MANSE1.366e-8378.2240S ribosomal protein S3 OS=Manduca sexta GN=RpS3 ... [more]
RS3_DROME2.411e-8074.1540S ribosomal protein S3 OS=Drosophila melanogaste... [more]
RS3_SCHPO1.120e-7771.9840S ribosomal protein S3 OS=Schizosaccharomyces po... [more]
RS3_CAEEL3.603e-7671.5740S ribosomal protein S3 OS=Caenorhabditis elegans... [more]
RS3_YEAST2.672e-7165.5540S ribosomal protein S3 OS=Saccharomyces cerevisi... [more]
RS3_DICDI7.049e-6462.5040S ribosomal protein S3 OS=Dictyostelium discoide... [more]
RS3_ENCCU9.270e-4039.4440S ribosomal protein S3 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionC31707C03EF StrClemenN Citrus clementina cDNA clone C31707C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923627 ID=FC923627; Name=FC923627; organism=Citrus clementina; type=EST; length=729bp
AGAAACTAAACCTAGGGTTTGCAGAGAGCTAGCTGCGCACACAAGCCACC
TCATTGAGATCATCAGATCCCTAACTGTGTAATCGAACCAACAGAAAGCA
AAATGGCAACTCAAATCAGCAAGAAAAGAAAGTTCGTGGCTGATGGCGTG
TTTTTCGCGGAGCTTAACGAGGTACTGACTAGAGAGCTTGCGGAGGACGG
TTATTCTGGAGTAGAGGTCAGGGTAACTCCCATGCGTACTGAGATCATCA
TCCGAACCACTCGCACTCAGAACGTTCTTGGTGAGAAAGGGAGGAGAATT
AGAGAGCTGACATCAGTGGTGCAGAAAAGGTTCAAATTCCCGGAGAATAG
CGTGGAGCTGTACGCTGAGAAAGTCAACAATAGAGGACTATGTGCCATTG
CTCAAGCCGAGTCTCTTCGCTACAAGCTCCTTGGTGGGCTTGCTGTTCGC
AGGGCTTGCTATGGTGTCTTGAGGTTCATTATGGAAAGTGGAGCCAAGGG
ATGTGAGGTCATTGTCAGTGGAAAGTTGAGGGCACAACGTGCAAAATCAA
TGAAGTTTAAGGATGGATATATGGTCTCTTCTGGTCAGCCAGTGAATGAA
TATATTGACTCTGCTGTGAGACATGTTCTTTTGAGACAGGGTGTACTTGG
TATTAAGGTCAAGATCATGCTTAGTTGGGATCCTAATGGAAAGCAGGNTC
CTACTACCCCTCTACCTGATCTCGTAACA
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