FC923627

Overview
NameFC923627
Unique NameFC923627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15394 contig Ccv1_Contig15394:6..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_THEON (30S ribosomal protein S3P OS=Thermococcus onnurineus (strain NA1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 71/199 (35.68%), Postives = 106/199 (53.27%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPD 720
            +R F+ +GV    ++E L +EL   GY G++++ TP+             V+G  GRRIRELT +++++F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM          P   LPD
Sbjct:    4 ERYFIKEGVREMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGVHFRRAAYAAIRAIMRNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVSIM---------PPDAKLPD 191          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_THEGJ (30S ribosomal protein S3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps3p PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28
Identity = 67/182 (36.81%), Postives = 102/182 (56.04%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669
            +R F+ +GV    ++E L +EL   GY G++++ TP+             V+G  GRRIRELT +++++F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM
Sbjct:    4 ERYFIKEGVKEMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAASPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM 183          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_THESM (30S ribosomal protein S3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps3p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.063e-27
Identity = 66/182 (36.26%), Postives = 101/182 (55.49%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669
            +R F+ +G+    ++E L +EL   GY G++++ TP+             V+G  GR+IRELT ++++RF      +E+  E++ N    A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GVLG+KV IM
Sbjct:    4 ERYFIKEGIKEMLIDEYLEKELRRAGYGGLDIKKTPLGTKVVIFVERPGFVIGRGGRKIRELTRILERRFNLENPQIEV--EEIKNSYFNAKVQATRLAQALERGVHFRRAAYAAIRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYIAKVGNPAETLVSRGYAQALLKLGVLGVKVSIM 183          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_PYRFU (30S ribosomal protein S3P OS=Pyrococcus furiosus GN=rps3p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.063e-27
Identity = 71/193 (36.79%), Postives = 105/193 (54.40%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXP 702
            +R F+ + V    ++E L +EL   GY G++++ TP+             V+G  GRRIRELT +++K+F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  LR IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM    P G + P
Sbjct:    4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM----PPGARLP 190          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_PYRKO (30S ribosomal protein S3P OS=Pyrococcus kodakaraensis GN=rps3p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.368e-27
Identity = 71/199 (35.68%), Postives = 105/199 (52.76%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPD 720
            +R F+ +GV    ++E L +EL   GY G++++ TP+             V+G  GRRIRELT +++K+F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +        L+ GV+G+KV IM          P   LPD
Sbjct:    4 ERYFIKEGVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVTIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSRGYAQAQLKLGVIGVKVSIM---------PPDAKLPD 191          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_PYRAB (30S ribosomal protein S3P OS=Pyrococcus abyssi GN=rps3p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.420e-26
Identity = 63/182 (34.62%), Postives = 101/182 (55.49%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669
            +R F+ + V    ++E L +EL   GY G++++ TP+             V+G  GRRIRELT +++++F      +++  +++ N  L A  QA  +   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM
Sbjct:    4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM 183          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_PYRHO (30S ribosomal protein S3P OS=Pyrococcus horikoshii GN=rps3p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.834e-26
Identity = 63/182 (34.62%), Postives = 101/182 (55.49%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669
            +R F+ + V    ++E L +EL   GY G++++ TP+             V+G  GRRIRELT +++++F      +++  +++ N  L A  QA  +   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM
Sbjct:    4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYSAMRAIMNNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM 183          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METBF (30S ribosomal protein S3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.181e-24
Identity = 70/202 (34.65%), Postives = 101/202 (50.00%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            +RKFV DG   A ++E    +L   GY G+E+  TPM             V+G+ G+ IR+LT  V  R+      ++  A++V    L A   A  L   +  G   R+A +  LR +M +GA GCEV++SGKL   R++  KF DGY+  SG PV+E +D      + + G LG KV+I+          P   LPD  T
Sbjct:    4 ERKFVNDGFVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVAARYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVDEVVDEGFAVAIKKLGTLGCKVRII---------QPGVVLPDSYT 194          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_THEPD (30S ribosomal protein S3P OS=Thermofilum pendens (strain Hrk 5) GN=rps3p PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.216e-23
Identity = 62/181 (34.25%), Postives = 99/181 (54.70%), Query Frame = 1
Query:  127 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669
            RK ++ G+ +  LNE L R+L    Y   +   TP+             V+G KG  I+ +  V+++ F      +++   +V N+ L A   A  +   L+ G+  RRA    L  IM +GA+G E+++SGKL +QR ++ KF  GY+  SG+P  E +D A+ HVLL+ G+ G+KV+IM
Sbjct:    6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKAIAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAAGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKVRIM 184          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METHJ (30S ribosomal protein S3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps3p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 68/193 (35.23%), Postives = 101/193 (52.33%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXP 702
            +RKFVADGV    +   L  EL   GY G+++  TP+             V+G+ G+ +R LT  +   +      +E+  ++V+N  L A   AE L   L  G   R+A    LR IM+SGA GCEV++SGKL   R +  KF +GY+  SG PVN  +D      + + GV+G++V+++    P G Q P
Sbjct:    4 ERKFVADGVRKVRVERHLGHELKRAGYGGMDLIRTPLGTQVTIFAEKPGIVIGKGGKVVRTLTQDLATTYGVESPQIEV--QQVDNPNLNAQIMAERLASALERGWYFRKAGSSTLRRIMDSGALGCEVVISGKLTGARGRVQKFTEGYIKHSGDPVNTLVDKGYAVAIKKLGVIGVQVRLI----PPGAQLP 190          
The following BLAST results are available for this feature:
BLAST of FC923627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_THEON3.654e-2835.6830S ribosomal protein S3P OS=Thermococcus onnurine... [more]
RS3_THEGJ8.140e-2836.8130S ribosomal protein S3P OS=Thermococcus gammatol... [more]
RS3_THESM1.063e-2736.2630S ribosomal protein S3P OS=Thermococcus sibiricu... [more]
RS3_PYRFU1.063e-2736.7930S ribosomal protein S3P OS=Pyrococcus furiosus G... [more]
RS3_PYRKO2.368e-2735.6830S ribosomal protein S3P OS=Pyrococcus kodakaraen... [more]
RS3_PYRAB3.420e-2634.6230S ribosomal protein S3P OS=Pyrococcus abyssi GN=... [more]
RS3_PYRHO5.834e-2634.6230S ribosomal protein S3P OS=Pyrococcus horikoshii... [more]
RS3_METBF4.181e-2434.6530S ribosomal protein S3P OS=Methanosarcina barker... [more]
RS3_THEPD1.216e-2334.2530S ribosomal protein S3P OS=Thermofilum pendens (... [more]
RS3_METHJ1.589e-2335.2330S ribosomal protein S3P OS=Methanospirillum hung... [more]

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Properties
Property NameValue
Genbank descriptionC31707C03EF StrClemenN Citrus clementina cDNA clone C31707C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923627 ID=FC923627; Name=FC923627; organism=Citrus clementina; type=EST; length=729bp
AGAAACTAAACCTAGGGTTTGCAGAGAGCTAGCTGCGCACACAAGCCACC
TCATTGAGATCATCAGATCCCTAACTGTGTAATCGAACCAACAGAAAGCA
AAATGGCAACTCAAATCAGCAAGAAAAGAAAGTTCGTGGCTGATGGCGTG
TTTTTCGCGGAGCTTAACGAGGTACTGACTAGAGAGCTTGCGGAGGACGG
TTATTCTGGAGTAGAGGTCAGGGTAACTCCCATGCGTACTGAGATCATCA
TCCGAACCACTCGCACTCAGAACGTTCTTGGTGAGAAAGGGAGGAGAATT
AGAGAGCTGACATCAGTGGTGCAGAAAAGGTTCAAATTCCCGGAGAATAG
CGTGGAGCTGTACGCTGAGAAAGTCAACAATAGAGGACTATGTGCCATTG
CTCAAGCCGAGTCTCTTCGCTACAAGCTCCTTGGTGGGCTTGCTGTTCGC
AGGGCTTGCTATGGTGTCTTGAGGTTCATTATGGAAAGTGGAGCCAAGGG
ATGTGAGGTCATTGTCAGTGGAAAGTTGAGGGCACAACGTGCAAAATCAA
TGAAGTTTAAGGATGGATATATGGTCTCTTCTGGTCAGCCAGTGAATGAA
TATATTGACTCTGCTGTGAGACATGTTCTTTTGAGACAGGGTGTACTTGG
TATTAAGGTCAAGATCATGCTTAGTTGGGATCCTAATGGAAAGCAGGNTC
CTACTACCCCTCTACCTGATCTCGTAACA
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