FC923627

Overview
NameFC923627
Unique NameFC923627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15394 contig Ccv1_Contig15394:6..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METAC (30S ribosomal protein S3P OS=Methanosarcina acetivorans GN=rps3p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 63/182 (34.62%), Postives = 96/182 (52.75%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669
            ++KFV DG   A ++E    +L+  GY G+E+  TPM             V+G+ G+ IR+LT  V  ++      ++  A++V    L A   A  L   +  G   R+A +  LR +M +GA GCEV++SGKL   R++  KF DGY+  SG PV E +D      + + G LG KV+I+
Sbjct:    4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVRII 183          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METLZ (30S ribosomal protein S3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps3p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.075e-23
Identity = 65/193 (33.68%), Postives = 105/193 (54.40%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXP 702
            ++KFVADGV    + + L +EL   GY G+++  TP+             V+G+ G+ +R+LT+ +   +      VE+  ++V N  L A   AE L   L  G   R+A   V+R +M+SGA GCEVI++GKL   RA+  KF +GY+  SG+P    ++      + + G++G++VKI+    P G + P
Sbjct:    4 EKKFVADGVRKVRVEQYLNKELKRAGYGGMDIVRTPVGTQVTIFAEKPGIVIGKGGKLVRQLTTDLSTVYGIESPQVEV--QQVANPNLNAQIMAERLANALERGWYFRKAGTSVIRRVMDSGALGCEVIIAGKLTGARARVQKFVEGYIKHSGEPSESIVEKGYATAIKKLGIIGVQVKIV----PPGAKLP 190          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METMA (30S ribosomal protein S3P OS=Methanosarcina mazei GN=rps3p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.037e-23
Identity = 62/182 (34.07%), Postives = 95/182 (52.20%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669
            ++KFV DG   A ++E    +L   GY G+E+  TPM             V+G+ G+ IR+LT  V  ++      ++  A++V    L A   A  L   +  G   R+A +  +R +M +GA GCEV++SGKL   R++  KF DGY+  SG PV E +D      + + G LG KV+I+
Sbjct:    4 EKKFVNDGYVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIIIYSEKPGMVIGKAGKVIRKLTRDVATKYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTIRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGHPVEEVVDEGFAVAIKKLGTLGCKVRII 183          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METB6 (30S ribosomal protein S3P OS=Methanoregula boonei (strain 6A8) GN=rps3p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.884e-23
Identity = 57/182 (31.32%), Postives = 101/182 (55.49%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669
            +RKF+A+G   A + + LT+EL   G+ G+++  TP+             V+G+ G+ + +LT  + + +      +E+  ++V N    A   AE L   L  G   R+A   ++R +M+SGA GCEV+++GKL   RA++ KF +GY+   G+P N  ++      + + GV+G++VKI+
Sbjct:    4 ERKFIAEGARKARVEKYLTKELKRAGFGGMDIARTPLGTQVTIFAEKPGIVIGKGGKLVHQLTQDLAQNYGVESPQIEV--QQVQNPSFNAQIMAERLANALERGWYFRKAGSSIMRRVMDSGALGCEVVIAGKLTGARARTQKFTEGYIKHCGEPSNTIVEKGYAIAIKKLGVIGVQVKIV 183          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_HALMA (30S ribosomal protein S3P OS=Haloarcula marismortui GN=rps3p PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.884e-23
Identity = 62/202 (30.69%), Postives = 109/202 (53.96%), Query Frame = 1
Query:  115 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPD 720
            ++ +++F+ DG+   +++E    EL   GY G++V  TPM             V+G+ G+ IR++T+ ++ RF   +  V++  ++V+   L A   A+ L   L  G   R+A +  +  IMESGA G E+++SGK+   R++  KF  GY+  +G+P  E +DS V   +++ G +G++VKI+          P   LPD
Sbjct:    1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGVRVKII---------PPNAELPD 191          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METMJ (30S ribosomal protein S3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.030e-22
Identity = 60/182 (32.97%), Postives = 98/182 (53.85%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669
            ++KF+ DGV    + + LT+EL   GY G+++  TP+             V+G+ G+++R+LT  +   +      VE+  ++V N    A   AE L   L  G   R+A    +R IMESGA GCEVIV+GKL   R+++ KF +GY+   G+P    ++      + + G +G++VKI+
Sbjct:    4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVRQLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIMESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQVKIV 183          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METJA (30S ribosomal protein S3P OS=Methanocaldococcus jannaschii GN=rps3p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.030e-22
Identity = 64/182 (35.16%), Postives = 97/182 (53.30%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669
            +R FV + V    ++E   +EL++ GYS  ++R TP+             V+G +G RIRELT  + K F   +  +++  + V N  L A   A+ +   L  GL  RR  +  +R +M +GAKG  VI+SGKL  +RA++ KF  GYM   G+P  E +D        + GV+G+ VKIM
Sbjct:    3 ERTFVKENVKRLLIDEYFKKELSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIRELTETLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVMNAGAKGVIVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKPGVIGVTVKIM 182          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METTH (30S ribosomal protein S3P OS=Methanobacterium thermoautotrophicum GN=rps3p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.756e-22
Identity = 65/201 (32.34%), Postives = 103/201 (51.24%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLV 726
            ++ FV +G+    ++E L +EL   GY G++V+VTPM             V+G  G+ +R +T  ++ +F      VE+  ++V+   L     A  +   L  G+  RR  Y  +R IM +GA+G EV +SGK+R  R+ + KF DGY+   G+P  +++      V L+ GVLG+ V+IM          P   LPD V
Sbjct:    3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVRIM---------PPDVVLPDKV 192          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_NATPD (30S ribosomal protein S3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps3p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.996e-22
Identity = 62/202 (30.69%), Postives = 109/202 (53.96%), Query Frame = 1
Query:  115 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPD 720
            ++ + +F+ DG+   +++E  + EL+  GY G+EV  TPM             V+G+ G+ IR++T+ +++ F   +  V++  ++V+   L A   A+ L   L  G   R+A +  +  IMESGA G E+I+SGK+   R++  KF  GY+  +G+P    +DS V   +++ G +G++VKI+          P   LPD
Sbjct:    1 MADEHQFIHDGLQRTQIDEFFSEELSRAGYGGMEVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTTLEEEFGLEDPQVDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIILSGKVTGARSRVEKFNRGYIKHNGEPAESIVDSGVGTAVMKLGTIGVQVKII---------PPEAELPD 191          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_UNCMA (30S ribosomal protein S3P OS=Uncultured methanogenic archaeon RC-I GN=rps3p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.913e-22
Identity = 66/202 (32.67%), Postives = 99/202 (49.01%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            ++KFV +G   A ++E    +L   GY G+E+  TPM             ++G+ G+ IR  T  +  RFK     +++  ++V    L A   A  L   L  G   R+A    L+ IM+SGA GCEVI++GKL   R +  KF  GY+   G+PV E +D        + G++G+KV+IM          P   LPD +T
Sbjct:    4 EKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIRRYTKEMDMRFKMDNPQIDV--QEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIMDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVDVGYARAKKKLGIIGVKVRIM---------PPEAVLPDQIT 194          
The following BLAST results are available for this feature:
BLAST of FC923627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_METAC1.589e-2334.6230S ribosomal protein S3P OS=Methanosarcina acetiv... [more]
RS3_METLZ2.075e-2333.6830S ribosomal protein S3P OS=Methanocorpusculum la... [more]
RS3_METMA6.037e-2334.0730S ribosomal protein S3P OS=Methanosarcina mazei ... [more]
RS3_METB67.884e-2331.3230S ribosomal protein S3P OS=Methanoregula boonei ... [more]
RS3_HALMA7.884e-2330.6930S ribosomal protein S3P OS=Haloarcula marismortu... [more]
RS3_METMJ1.030e-2232.9730S ribosomal protein S3P OS=Methanoculleus marisn... [more]
RS3_METJA1.030e-2235.1630S ribosomal protein S3P OS=Methanocaldococcus ja... [more]
RS3_METTH1.756e-2232.3430S ribosomal protein S3P OS=Methanobacterium ther... [more]
RS3_NATPD2.996e-2230.6930S ribosomal protein S3P OS=Natronomonas pharaoni... [more]
RS3_UNCMA3.913e-2232.6730S ribosomal protein S3P OS=Uncultured methanogen... [more]

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Properties
Property NameValue
Genbank descriptionC31707C03EF StrClemenN Citrus clementina cDNA clone C31707C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923627 ID=FC923627; Name=FC923627; organism=Citrus clementina; type=EST; length=729bp
AGAAACTAAACCTAGGGTTTGCAGAGAGCTAGCTGCGCACACAAGCCACC
TCATTGAGATCATCAGATCCCTAACTGTGTAATCGAACCAACAGAAAGCA
AAATGGCAACTCAAATCAGCAAGAAAAGAAAGTTCGTGGCTGATGGCGTG
TTTTTCGCGGAGCTTAACGAGGTACTGACTAGAGAGCTTGCGGAGGACGG
TTATTCTGGAGTAGAGGTCAGGGTAACTCCCATGCGTACTGAGATCATCA
TCCGAACCACTCGCACTCAGAACGTTCTTGGTGAGAAAGGGAGGAGAATT
AGAGAGCTGACATCAGTGGTGCAGAAAAGGTTCAAATTCCCGGAGAATAG
CGTGGAGCTGTACGCTGAGAAAGTCAACAATAGAGGACTATGTGCCATTG
CTCAAGCCGAGTCTCTTCGCTACAAGCTCCTTGGTGGGCTTGCTGTTCGC
AGGGCTTGCTATGGTGTCTTGAGGTTCATTATGGAAAGTGGAGCCAAGGG
ATGTGAGGTCATTGTCAGTGGAAAGTTGAGGGCACAACGTGCAAAATCAA
TGAAGTTTAAGGATGGATATATGGTCTCTTCTGGTCAGCCAGTGAATGAA
TATATTGACTCTGCTGTGAGACATGTTCTTTTGAGACAGGGTGTACTTGG
TATTAAGGTCAAGATCATGCTTAGTTGGGATCCTAATGGAAAGCAGGNTC
CTACTACCCCTCTACCTGATCTCGTAACA
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