FC923627

Overview
NameFC923627
Unique NameFC923627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15394 contig Ccv1_Contig15394:6..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METM5 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.913e-22
Identity = 62/202 (30.69%), Postives = 101/202 (50.00%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            +R FV + V    ++E    +L   GYS ++++ TP+             V+G KG+ ++ELT  + K +      +E+  ++V N  L        +   L  G+  RR  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ GV+G+ VKIM          P   LPD +T
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLAKEYAVKNPQIEV--KQVENPDLDPAIVGHKIASSLERGMHFRRTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTVKIM---------KPDVTLPDEIT 193          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_META3 (30S ribosomal protein S3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps3p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.675e-22
Identity = 58/182 (31.87%), Postives = 98/182 (53.85%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669
            +R F+ + V    ++E L  +L   GYS ++V+ TP+             V+G KG+ ++ELT  +    K+  N  ++  +++ +  L A   A+ +   L  G+  RR  +  +R +M  GAKG  VIVSGKL  +R+++ K+ +GYM   G+P  E +D   +   L+ GV+G+ VKIM
Sbjct:    3 ERTFIKENVMETLVDEYLKNKLPRAGYSHMDVKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETIAT--KYGVNKPQIEVKQIESPDLDAGVVAQKIASSLERGMHFRRVAHSAIRRVMAQGAKGVVVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVDQCHKIAKLKLGVVGVTVKIM 182          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METTP (30S ribosomal protein S3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps3p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.139e-21
Identity = 60/182 (32.97%), Postives = 99/182 (54.40%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669
            ++KFV +G   A ++E L +EL   GY G+ +  TPM             V+G+ G+ IR+LT  +++RF+     +++  + V    L A   A  L   L  G   R+A   +LR +M+SGA GCE+++SGKL   R++  KF  GY+  SG+P  E +D+     + + G +G +V+I+
Sbjct:    4 EKKFVQEGFTKALVDEYLAKELDRAGYGGMVMNRTPMGTQITVYAEKPGMVIGKGGKLIRKLTRDLERRFRLDNPQIDV--QDVGKSDLNARVVANRLASSLEHGWYFRKAGQSMLRRVMDSGALGCEIVISGKLTGPRSRVEKFLAGYIKHSGKPAEEIVDTGYAVAVKKLGAIGCQVRIV 183          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METST (30S ribosomal protein S3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps3p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.139e-21
Identity = 62/199 (31.16%), Postives = 100/199 (50.25%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPD 720
            ++ FV +G+    ++E L  +L   GY G++++VTP+             V+G  G+ +R +T  ++  F      VE+  ++V+   L     A  +   L  G+  RR  Y ++R IM +GA+G EV +SGK+R  R+   KF +GY+   G+P  +Y+      V L+ GVLGI V+IM          P   LPD
Sbjct:    3 EKDFVKEGLKRTRIDEYLETKLERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTVRAITKTLKNNFDLENPQVEV--KEVDVPELNPRIMAHKVVAMLQRGMQFRRVAYSIIRRIMSAGAQGVEVTISGKIRGSRSACAKFNEGYIKKCGEPSIKYVKEGFATVQLKPGVLGIYVRIM---------PPEVTLPD 190          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METBU (30S ribosomal protein S3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps3p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.139e-21
Identity = 56/182 (30.77%), Postives = 98/182 (53.85%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669
            ++KFV DG   A ++E   ++L+  GY G+++  TPM             V+G+ G+ IR+LT  V + +      ++  A++V    L A   A  L   +  G   R+A +  +R +M +GA GCE+++SGKL   R++  K  +GY+  +G+PV++ +D      + + G LG KV+I+
Sbjct:    4 EKKFVQDGYVKASMDEYFAKQLSRAGYGGMDINRTPMGTQITVYAEKPGMVIGKAGKVIRKLTRDVDRLYDLDNPQID--AQEVKRPELNAQMMASRLASSIERGWYFRKAGHNTMRAVMNAGALGCEIVISGKLTGSRSRVEKMVNGYIKHAGKPVDDIVDDGFATAVKKLGTLGCKVRII 183          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METS3 (30S ribosomal protein S3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.487e-21
Identity = 63/201 (31.34%), Postives = 102/201 (50.75%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLV 726
            ++ FV +G+    ++E L +EL   GY G++V++TP+             V+G  G+ +R +T+ ++  F      +E+  ++V+   L     A  +   L  G+  RR  Y  +R IM +GA+G EV +SGK+R  R+   KF +GY+   G+P    ++     V L+ GVLGI V+IM          P T LPD V
Sbjct:    3 EKDFVTEGLKRTRIDEYLEKELERAGYGGMDVQITPLGTMVVVYAERPGMVIGRGGKNVRAITNTLKNDFGLDNPQIEV--KEVSVPELNPKIMAYKIANMLQRGMHFRRVAYSTIRRIMGAGAQGVEVTISGKIRGSRSAVAKFVEGYIKKCGEPSIRLVEEGFATVQLKPGVLGIYVRIM---------PPETVLPDSV 192          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METM7 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.638e-21
Identity = 59/202 (29.21%), Postives = 101/202 (50.00%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            +R FV + V    ++E    +L   GYS ++++ TP+             V+G KG+ ++ELT  +   +    N+ ++  ++V +  L        +   L  G+  R+  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ GV+G+ VKIM          P   LPD +T
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLSTEYAV--NNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTVKIM---------KPDVSLPDEIT 193          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_HALSA (30S ribosomal protein S3P OS=Halobacterium salinarium GN=rps3p PE=3 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 9.638e-21
Identity = 59/197 (29.95%), Postives = 102/197 (51.78%), Query Frame = 1
Query:  130 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPD 720
            +F+  G+  ++++E    ELA  GY G+E+  TPM             V+G+ G+ IR++T+ +++RF   +  +++  ++V    L A   A+ L   L  G   R+A +  +  IMESGA G E+++SGK+   R +  KF  GY+  +G+P  E +D      +++ G +G+ VKI+          P   LPD
Sbjct:    6 EFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGKNIRKITTQLEERFDLEDPQIDV--QEVEEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVDHGKGVAVMKLGTIGVNVKII---------PPNAELPD 191          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METM6 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.259e-20
Identity = 59/202 (29.21%), Postives = 101/202 (50.00%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            +R FV + V    ++E    +L   GYS ++++ TP+             V+G KG+ ++ELT  +   +    N+ ++  ++V +  L        +   L  G+  R+  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ GV+G+ VKIM          P   LPD +T
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLSTEYAV--NNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTVKIM---------KPDVSLPDEIT 193          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METMP (30S ribosomal protein S3P OS=Methanococcus maripaludis GN=rps3p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.804e-20
Identity = 58/199 (29.15%), Postives = 97/199 (48.74%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPD 720
            +R FV + V    ++E    +L   GYS ++ + TP+             V+G KG+ ++ELT  +   +      +E+  ++V N  L        +   L  G+  R+  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ G++G+ VKIM          P   LPD
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGVTVKIM---------RPDVSLPD 190          
The following BLAST results are available for this feature:
BLAST of FC923627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_METM53.913e-2230.6930S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_META36.675e-2231.8730S ribosomal protein S3P OS=Methanococcus aeolicu... [more]
RS3_METTP1.139e-2132.9730S ribosomal protein S3P OS=Methanosaeta thermoph... [more]
RS3_METST1.139e-2131.1630S ribosomal protein S3P OS=Methanosphaera stadtm... [more]
RS3_METBU1.139e-2130.7730S ribosomal protein S3P OS=Methanococcoides burt... [more]
RS3_METS31.487e-2131.3430S ribosomal protein S3P OS=Methanobrevibacter sm... [more]
RS3_METM79.638e-2129.2130S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_HALSA9.638e-2129.9530S ribosomal protein S3P OS=Halobacterium salinar... [more]
RS3_METM61.259e-2029.2130S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_METMP2.804e-2029.1530S ribosomal protein S3P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionC31707C03EF StrClemenN Citrus clementina cDNA clone C31707C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923627 ID=FC923627; Name=FC923627; organism=Citrus clementina; type=EST; length=729bp
AGAAACTAAACCTAGGGTTTGCAGAGAGCTAGCTGCGCACACAAGCCACC
TCATTGAGATCATCAGATCCCTAACTGTGTAATCGAACCAACAGAAAGCA
AAATGGCAACTCAAATCAGCAAGAAAAGAAAGTTCGTGGCTGATGGCGTG
TTTTTCGCGGAGCTTAACGAGGTACTGACTAGAGAGCTTGCGGAGGACGG
TTATTCTGGAGTAGAGGTCAGGGTAACTCCCATGCGTACTGAGATCATCA
TCCGAACCACTCGCACTCAGAACGTTCTTGGTGAGAAAGGGAGGAGAATT
AGAGAGCTGACATCAGTGGTGCAGAAAAGGTTCAAATTCCCGGAGAATAG
CGTGGAGCTGTACGCTGAGAAAGTCAACAATAGAGGACTATGTGCCATTG
CTCAAGCCGAGTCTCTTCGCTACAAGCTCCTTGGTGGGCTTGCTGTTCGC
AGGGCTTGCTATGGTGTCTTGAGGTTCATTATGGAAAGTGGAGCCAAGGG
ATGTGAGGTCATTGTCAGTGGAAAGTTGAGGGCACAACGTGCAAAATCAA
TGAAGTTTAAGGATGGATATATGGTCTCTTCTGGTCAGCCAGTGAATGAA
TATATTGACTCTGCTGTGAGACATGTTCTTTTGAGACAGGGTGTACTTGG
TATTAAGGTCAAGATCATGCTTAGTTGGGATCCTAATGGAAAGCAGGNTC
CTACTACCCCTCTACCTGATCTCGTAACA
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