FC923627
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METKA (30S ribosomal protein S3P OS=Methanopyrus kandleri GN=rps3p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.804e-20 Identity = 65/198 (32.83%), Postives = 96/198 (48.48%), Query Frame = 1 Query: 127 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPD 720 +KFV G+ EL+E L EL GY G+ ++ P +G +GR IR + VQ+RF V + +++ + L A L L G+ RRA YG LR IM +GAKG +I+SGKL RA++ KF +G + G+P +EY+ + + G +G+ V+IM P LPD Sbjct: 12 KKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRRVEEEVQERFPLL-GRVSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTKPGAIGVTVRIM---------PPDVELPD 199
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_SULSO (30S ribosomal protein S3P OS=Sulfolobus solfataricus GN=rps3p PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.247e-20 Identity = 64/206 (31.07%), Postives = 101/206 (49.03%), Query Frame = 1 Query: 124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI----MLSWDPNGKQXPTTPLPDLVT 729 KR F+ + +++E L ++ Y+GVEV TP+ ++G GR I++L + +K F + + V N L A A L L G RRA + +R IM +GA G E+I+SGKL +RA+ K K+G + SGQ + + ID A+ +L+ G+ G++V I + N K+ P+ P VT Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLAQIFEKVFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVEVVITKPLKIEDKINLKESPSVPQEVSVT 208
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METVS (30S ribosomal protein S3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3p PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.066e-19 Identity = 57/199 (28.64%), Postives = 99/199 (49.75%), Query Frame = 1 Query: 124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPD 720 +R F+A+ V ++E +L GYS +E++ TP+ V+G KG+ ++ELT + + +K +E+ + + L + L G+ R+ + +R +M +GAKG +I+SGKL +R+++ KF DGYM G+P E + + + L+ G++G+ VKIM P LPD Sbjct: 3 ERTFIAENVSETLIDEYFKGKLVRAGYSHLELKKTPIGTRITVFAEKPGFVIGRKGKMVKELTDTLTEVYKVENPQIEV--KPLETPDLDPAIVGHKIAASLEKGMHFRKTAHSAVRRVMAAGAKGVAIIISGKLSGERSRTEKFMDGYMKHCGEPAEELVIKSHQLAKLKLGIVGVTVKIM---------RPDVSLPD 190
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_IGNH4 (30S ribosomal protein S3P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps3p PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.066e-19 Identity = 64/181 (35.36%), Postives = 94/181 (51.93%), Query Frame = 1 Query: 124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 666 K+ F+ + +++E L + GYS VE++ TPM ++G +G+ I+++T V+++ F P V + KV L A A L L G RRA Y LR IM +GA G +V VSGKLR +RA+ K+ G + SG V D A+ HVLL+ GV G++V I Sbjct: 9 KKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKVGVEGVEVII 187
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_HALWD (30S ribosomal protein S3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3p PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.066e-19 Identity = 56/196 (28.57%), Postives = 105/196 (53.57%), Query Frame = 1 Query: 115 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXP 702 ++ + +F+ +G+ ++++E EL GY G++V TPM V+G+ G+ IR++T ++ RF + +++ ++V+ L A A+ L L G R+A + + I+ESGA G E+++SGK+ R++ KF GY+ +G+P E +D +++ G +G+ VKI+ P G + P Sbjct: 1 MADEHQFIENGLQRSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKVTRELEDRFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIIESGALGAEIVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAVMKLGTIGVTVKII----PPGAELP 190
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_SULAC (30S ribosomal protein S3P OS=Sulfolobus acidocaldarius GN=rps3p PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19 Identity = 62/181 (34.25%), Postives = 94/181 (51.93%), Query Frame = 1 Query: 124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 666 KR F+ ++E L ++ Y+GVE+ TP+ ++G+ G+ I++L V++K F + + A + N L A A L L G RRA + +R IM SGA G EVIVSGKL ++RAK K K+G + SGQ + + ID A+ +L+ GV G++V I Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQLAQVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGVYGVEVVI 183
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_HYPBU (30S ribosomal protein S3P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps3p PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18 Identity = 54/188 (28.72%), Postives = 96/188 (51.06%), Query Frame = 1 Query: 124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPN 687 KR F+ + +++E L + GY+GV++ P+ ++G +G IR+L ++ + F ++ ++ +V N L A A + L G RR + R ++ +GA G ++++SGKLR +RA+ K + G + ++G V +D AV HV L+ GVLGI+V I+ P+ Sbjct: 5 KRYFIKKAMVQTQIDEYLAKRFYRAGYAGVQIIQFPLGTRVIIYAERPAMIIGRRGETIRQLAAIFEHEFGL--SNPQITVRRVENPDLNARVVASRIAVLLERGAYYRRVANVMARRVLNAGAIGVQIVISGKLRTERARYEKVRRGKVYTTGHQVEYMVDRAVMHVTLKPGVLGIEVMIVKPAKPS 190
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_AERPE (30S ribosomal protein S3P OS=Aeropyrum pernix GN=rps3p PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18 Identity = 61/194 (31.44%), Postives = 96/194 (49.48%), Query Frame = 1 Query: 103 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDP 684 M T++ K F+ G+ +++E L + E GYS V+V T + ++G +G IR L V Q F P + + E+ N L A QA + + G+ RR + + IM +GA G E+ +SGKL ++RA+ KFK G + SG V+E +D A + L +GV+G+ V I+ P Sbjct: 1 MPTKVVKH--FLNQGLLRTKIDEWLAQNFYEAGYSRVKVVQTSLGTNITIWAERPALIIGRRGATIRRLQEVFQTVFGLPNPRIRV--EQPENPMLDARVQAFRIARSIERGIHFRRVAFAAINRIMSNGALGVEITISGKLTSERARFEKFKAGKVYKSGHKVDELVDRASAYARLPKGVIGVDVIIVKPGKP 190
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_ARCFU (30S ribosomal protein S3P OS=Archaeoglobus fulgidus GN=rps3p PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17 Identity = 63/199 (31.66%), Postives = 97/199 (48.74%), Query Frame = 1 Query: 124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPD 720 +RKFV + + + E + E+ G+ GV++ TP+ V+G+ GRRI+ LT +K F + ++ ++V A A L L G RRA Y L IME+GAKGCE+ +SGKL ++RA++ KF G +V +G P + + + GVLG+ V+I+ P LPD Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIKALT---EKLKDFGIENPQVSVDEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIMEAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMVQKGFDIAIKKLGVLGVSVRII---------PPDVTLPD 190
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_SULTO (30S ribosomal protein S3P OS=Sulfolobus tokodaii GN=rps3p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 55/181 (30.39%), Postives = 96/181 (53.04%), Query Frame = 1 Query: 124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 666 K+ F+ + ++E L ++ Y+GVE+ TP+ ++G+ G+ I++L ++++ F ++ ++ V N L A A L L G RRA + +R IM +GA G EVI+SGKL ++RAK K K+G + SG +++ +D AV +L+ GV G+++ I Sbjct: 5 KKYFLQRSMTKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPALIIGKGGKTIKQLAQMLERYFGL--DNPQITVTSVENPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMNAGALGAEVIISGKLTSERAKYEKLKEGVVYKSGAFLDKIVDRAVAIAMLKPGVYGVEILI 183 The following BLAST results are available for this feature:
BLAST of FC923627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923627 ID=FC923627; Name=FC923627; organism=Citrus clementina; type=EST; length=729bpback to top |