FC923627

Overview
NameFC923627
Unique NameFC923627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15394 contig Ccv1_Contig15394:6..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_STAMF (30S ribosomal protein S3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.440e-16
Identity = 55/169 (32.54%), Postives = 88/169 (52.07%), Query Frame = 1
Query:  163 LNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669
            L+E L     + GY+G+E+  TP              ++G  G  IR+L +++Q  F     +V +    V +  L A   A  +   L   +  RR    +LR +ME+GA G E+I+SGKLR++RA+  K K G +  +G  V+  +D AV   LL++GV G++V I+
Sbjct:   20 LDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLMTIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVVIV 186          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_METS5 (30S ribosomal protein S3P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps3p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.457e-16
Identity = 53/181 (29.28%), Postives = 90/181 (49.72%), Query Frame = 1
Query:  124 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 666
            K+ F+   +    ++E L +E     Y+G E+  TPM             ++G+ G+ I+ L  +++K F     + ++   +     L A   A  L   L  G   RRA +  +R IM +GA G EVIVSGK+ ++RAK  K K+G +  +G  ++  +D A+    L+ G+ G++V I
Sbjct:    5 KKYFLQKSMTRVMVDEFLAKEYYNAEYAGSEISKTPMGTRVTIYAGRPAIIIGKDGKTIKRLAQILEKYFNL--ENPQITVTQPEKPELNARVMAFRLAVTLEKGYHFRRAAFMTIRRIMNAGALGAEVIVSGKITSERAKFEKLKEGIVYKTGNNLDVMVDRAIAIATLKMGIYGVEVVI 183          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_PYRCJ (30S ribosomal protein S3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps3p PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.219e-15
Identity = 50/169 (29.59%), Postives = 83/169 (49.11%), Query Frame = 1
Query:  163 LNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 666
            + E L   LA+ GY   E+  TP+             ++G KG  ++E++S++  +       +++    K+    L     A  +   +  G+  RR  +  +R +ME+GAKG E++VSGKL  +RAK  K   G +   G      +  AV HVLL+ G+ GI+V+I
Sbjct:   24 IKEFLEYRLAKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSSILANKLGVENPQIDVIDVSKIEAPELFPKVVAYRIANAMARGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERAKFEKITYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_PICTO (30S ribosomal protein S3P OS=Picrophilus torridus GN=rps3p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 49/185 (26.49%), Postives = 93/185 (50.27%), Query Frame = 1
Query:  121 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLS 675
            K+++FV D +    ++E L +E    G+ G+E++ TP              V+G  G +I+E+T  ++KRF      +E+  ++VN   L     ++ +   L  G   R+A    LR +++  A G  + + GK+  +RA++ KF  G +  SG+P    ++       L+ G++G+ V+I+ S
Sbjct:    2 KEKRFVNDNIKRLLVSEYLRKENDNAGFGGMEMKRTPYGTNITLYVNRPGLVIGRHGTKIKEMTETLEKRFAIESPQIEV--KEVNTPDLNPQIASKKIALSLEKGWNYRKAGNTSLRKMIDLNAPGVLIRIGGKISGERARAQKFMFGKIKYSGEPARSGVEYGFSEAKLKTGIIGVSVRILKS 184          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_PYRIL (30S ribosomal protein S3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 46/169 (27.22%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  163 LNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 666
            + E L  +L++ GY   E+  TP+             ++G+KG  ++E+++++  +       +++    K+    +     A  +   +  G+  RR  +  +R +ME+GAKG E++VSGKL  +RA+  K   G +   G      +  AV HVLL+ G+ GI+V+I
Sbjct:   24 IKEFLEYKLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGKKGVIVKEISNILVNKLGVENPQIDVIDVSKIEAPEMFPKVIAYRIANAMAKGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERARFEKLTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_PYRAE (30S ribosomal protein S3P OS=Pyrobaculum aerophilum GN=rps3p PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.122e-14
Identity = 46/169 (27.22%), Postives = 83/169 (49.11%), Query Frame = 1
Query:  163 LNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 666
            + E L   L++ GY   E+  TP+             ++G KG  ++E+++++  +       +++    K+    +     A  +   +  G+  RR  +  +R +ME+GAKG E++VSGKL  +RA+  K   G +   G      +  AV HVLL+ G+ GI+V+I
Sbjct:   24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVENPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_PYRAR (30S ribosomal protein S3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps3p PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 45/169 (26.63%), Postives = 82/169 (48.52%), Query Frame = 1
Query:  163 LNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 666
            + E L   L++ GY   E+  TP+             ++G KG  ++E+++++  +       +++    K+    +     A  +   +  G+  RR  +  +R + E+GAKG E++VSGKL  +RA+  K   G +   G      +  AV HVLL+ G+ GI+V+I
Sbjct:   24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSNILATKLGVENPQIDVIDVSKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFAAIRQLTEAGAKGFEIVVSGKLSTERARFEKQTFGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_THEVO (30S ribosomal protein S3P OS=Thermoplasma volcanium GN=rps3p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 47/183 (25.68%), Postives = 93/183 (50.82%), Query Frame = 1
Query:  121 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669
            K+RKFV + V    + E L +E    G+  + ++ TP              V+G +G +++++T  ++K++      +E+  + V +  L     A+ +   L  G + R+A    L+  +++GA+G  + +SGK+  +RA+  KF  G +  SG+P ++ +        L+ G+LG+ VKI+
Sbjct:    2 KERKFVNEAVKRLLVYEYLVKETENAGFGKMSMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTETLEKKYAIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLKRTIDAGARGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMLVGFSTAKLKVGILGVTVKIL 182          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_THEAC (30S ribosomal protein S3P OS=Thermoplasma acidophilum GN=rps3p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 46/183 (25.14%), Postives = 93/183 (50.82%), Query Frame = 1
Query:  121 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 669
            K+RKF+ + V    + E + +E    G+  + ++ TP              V+G +G +++++T  ++K++      +E+  + V +  L     A+ +   L  G + R+A    L   +++GAKG  + +SGK+  +RA+  KF  G +  SG+P ++ + +      L+ G+LG+ VKI+
Sbjct:    2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRTIQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGVTVKIL 182          
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_CENSY (30S ribosomal protein S3P OS=Cenarchaeum symbiosum GN=rps3p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 49/170 (28.82%), Postives = 78/170 (45.88%), Query Frame = 1
Query:  160 ELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES-GAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 666
            +L E L   + + G+SGVEV   P              V+G KG  IRELT  ++K F      V++  +++    L        +   +  G A RRA    ++ IME   A G ++ +SGKLR  R+   K   G +  +G   +  +   V HV    G++GI+++I
Sbjct:   16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDLKSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITISGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGIRIRI 183          
The following BLAST results are available for this feature:
BLAST of FC923627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_STAMF1.440e-1632.5430S ribosomal protein S3P OS=Staphylothermus marin... [more]
RS3_METS52.457e-1629.2830S ribosomal protein S3P OS=Metallosphaera sedula... [more]
RS3_PYRCJ1.219e-1529.5930S ribosomal protein S3P OS=Pyrobaculum calidifon... [more]
RS3_PICTO3.547e-1526.4930S ribosomal protein S3P OS=Picrophilus torridus ... [more]
RS3_PYRIL3.003e-1427.2230S ribosomal protein S3P OS=Pyrobaculum islandicu... [more]
RS3_PYRAE5.122e-1427.2230S ribosomal protein S3P OS=Pyrobaculum aerophilu... [more]
RS3_PYRAR1.141e-1326.6330S ribosomal protein S3P OS=Pyrobaculum arsenatic... [more]
RS3_THEVO1.262e-1225.6830S ribosomal protein S3P OS=Thermoplasma volcaniu... [more]
RS3_THEAC1.648e-1225.1430S ribosomal protein S3P OS=Thermoplasma acidophi... [more]
RS3_CENSY1.395e-1128.8230S ribosomal protein S3P OS=Cenarchaeum symbiosum... [more]

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Properties
Property NameValue
Genbank descriptionC31707C03EF StrClemenN Citrus clementina cDNA clone C31707C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923627 ID=FC923627; Name=FC923627; organism=Citrus clementina; type=EST; length=729bp
AGAAACTAAACCTAGGGTTTGCAGAGAGCTAGCTGCGCACACAAGCCACC
TCATTGAGATCATCAGATCCCTAACTGTGTAATCGAACCAACAGAAAGCA
AAATGGCAACTCAAATCAGCAAGAAAAGAAAGTTCGTGGCTGATGGCGTG
TTTTTCGCGGAGCTTAACGAGGTACTGACTAGAGAGCTTGCGGAGGACGG
TTATTCTGGAGTAGAGGTCAGGGTAACTCCCATGCGTACTGAGATCATCA
TCCGAACCACTCGCACTCAGAACGTTCTTGGTGAGAAAGGGAGGAGAATT
AGAGAGCTGACATCAGTGGTGCAGAAAAGGTTCAAATTCCCGGAGAATAG
CGTGGAGCTGTACGCTGAGAAAGTCAACAATAGAGGACTATGTGCCATTG
CTCAAGCCGAGTCTCTTCGCTACAAGCTCCTTGGTGGGCTTGCTGTTCGC
AGGGCTTGCTATGGTGTCTTGAGGTTCATTATGGAAAGTGGAGCCAAGGG
ATGTGAGGTCATTGTCAGTGGAAAGTTGAGGGCACAACGTGCAAAATCAA
TGAAGTTTAAGGATGGATATATGGTCTCTTCTGGTCAGCCAGTGAATGAA
TATATTGACTCTGCTGTGAGACATGTTCTTTTGAGACAGGGTGTACTTGG
TATTAAGGTCAAGATCATGCTTAGTTGGGATCCTAATGGAAAGCAGGNTC
CTACTACCCCTCTACCTGATCTCGTAACA
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