FC923633

Overview
NameFC923633
Unique NameFC923633
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923633 vs. ExPASy Swiss-Prot
Match: ARP2_SCHPO (Actin-related protein 2 OS=Schizosaccharomyces pombe GN=arp2 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.015e-49
Identity = 67/117 (57.26%), Postives = 87/117 (74.36%), Query Frame = 1
Query:  196 PMCVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG 546
            P  VGRP+LR EE     ++KD +VG  A  +R  L V YP+ NGI++++E+M Q+WD+ FF +LKIDP   KILLT+PP+NP  NREKM ETMFE+Y F GV++ IQAVL+LYAQG
Sbjct:   30 PSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQG 146          

HSP 2 Score: 57.3806 bits (137), Expect = 1.015e-49
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 2
Query:  545 VLMKMPEGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYL 697
            VL    +GL +G+V+DSGDGVTH+VPV +     HL  R++VAGR  T YL
Sbjct:  139 VLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYL 189          

HSP 3 Score: 38.891 bits (89), Expect = 1.015e-49
Identity = 15/27 (55.56%), Postives = 20/27 (74.07%), Query Frame = 2
Query:  125 VVCDNGTGYVKCGFAGENFPNSVFPCV 205
            +V DNGTG+VK G+A +NFP   FP +
Sbjct:    6 IVLDNGTGFVKVGYAKDNFPRFQFPSI 32          
BLAST of FC923633 vs. ExPASy Swiss-Prot
Match: ACT_EUPCR (Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.207e-39
Identity = 43/97 (44.33%), Postives = 67/97 (69.07%), Query Frame = 1
Query:  256 KDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG 546
            KD  VG      R    +SYP+ +G++++W+ M ++WD+ F++EL+I+     +LLT+ PLNP +NRE M   MFE+Y+F  ++IQIQAVL+LY+ G
Sbjct:   54 KDCFVGDERQQKRGVCTLSYPIKSGMIKDWDGMQKIWDYTFYNELRIETENHPVLLTEAPLNPKQNRENMCRIMFEEYDFPSMYIQIQAVLSLYSAG 150          

HSP 2 Score: 61.2326 bits (147), Expect = 3.207e-39
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 2
Query:  545 VLMKMPEGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYL 697
            VL     G  TG+V+DSGDGVTHVVP+ +GY  PH  +++ +AGR +T Y+
Sbjct:  143 VLSLYSAGRTTGIVVDSGDGVTHVVPIFEGYQIPHAIEKILLAGRDLTDYM 193          

HSP 3 Score: 42.743 bits (99), Expect = 3.207e-39
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 2
Query:  116 RNVVVCDNGTGYVKCGFAGENFPNSVFPCV 205
            +  +V DNG+G VK GFAGEN P SVFP V
Sbjct:    8 KEAIVVDNGSGVVKAGFAGENQPCSVFPSV 37          
BLAST of FC923633 vs. ExPASy Swiss-Prot
Match: ACT3_SOYBN (Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.335e-36
Identity = 49/117 (41.88%), Postives = 70/117 (59.83%), Query Frame = 1
Query:  196 PMCVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG 546
            P  VGRP  R+   ++    KD  VG  A   R  L + YP+ +GIV NW+DM ++W H F++EL++   E  +L  + PLNP  NRE   + MFE +N   +++ IQAVL+LYA G
Sbjct:   34 PSIVGRP--RHTGVMVGMGQKDXYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVVSEEPXVLSXEAPLNPKVNRES-AQIMFETFNVPAMYVAIQAVLSLYASG 147          

HSP 2 Score: 55.4546 bits (132), Expect = 1.335e-36
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 2
Query:  545 VLMKMPEGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYL 697
            VL     G  TG+V+DSGDGV+H VP+ +G + PH   R+++AGR +T +L
Sbjct:  140 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGDALPHAILRLDLAGRDLTDHL 190          

HSP 3 Score: 43.5134 bits (101), Expect = 1.335e-36
Identity = 17/27 (62.96%), Postives = 22/27 (81.48%), Query Frame = 2
Query:  125 VVCDNGTGYVKCGFAGENFPNSVFPCV 205
            +VCDNGTG VK GFAG++ P +VFP +
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSI 36          
BLAST of FC923633 vs. ExPASy Swiss-Prot
Match: ACT7_SOLTU (Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.382e-35
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = 1
Query:  196 PMCVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYN 492
            P  VGRP  R+   ++    KD  VG  A   R  L   YP+ +GIV NW+DM ++W H F++EL++ P E  +LLT+ PLNP  NREKM + MFE +N
Sbjct:   34 PSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTWKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 130          

HSP 2 Score: 52.373 bits (124), Expect = 2.382e-35
Identity = 20/41 (48.78%), Postives = 31/41 (75.61%), Query Frame = 2
Query:  584 VIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLGDL 706
            V+DSGDGV+H VP+ +GY+ PH   R+++AGR +T +L  +
Sbjct:  154 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEHLAKI 194          

HSP 3 Score: 44.669 bits (104), Expect = 2.382e-35
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 2
Query:  107 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCV 205
            +D+   +VCDNGTG VK GFAG++ P +VFP +
Sbjct:    4 VDDIQPLVCDNGTGMVKAGFAGDDSPRAVFPSI 36          
BLAST of FC923633 vs. ExPASy Swiss-Prot
Match: ACTZ_PNECA (Actin-2 OS=Pneumocystis carinii PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.489e-34
Identity = 48/118 (40.68%), Postives = 68/118 (57.63%), Query Frame = 1
Query:  196 PMCVGRPM-LRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG 546
            P  VGRP  L+     +E    D  +G  A +LR  L + YP+ +GIV +W+DM ++W   +  ELK    E  +LLT+ PLNP  NR++  +  FE +N   +F  IQAVL+LYA G
Sbjct:   36 PSYVGRPKHLKIMAGAIEG---DIFIGNKAQELRGLLKIKYPIEHGIVVDWDDMERIWQFIYTEELKTVSEEHPVLLTEAPLNPRTNRDQAAQVFFETFNVPALFTSIQAVLSLYASG 150          

HSP 2 Score: 59.6918 bits (143), Expect = 1.489e-34
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 2
Query:  545 VLMKMPEGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYL 697
            VL     G  TG+V+DSGDGVTH VP+ +G++ P   +R+++AGR +T YL
Sbjct:  143 VLSLYASGRTTGVVLDSGDGVTHAVPIYEGFAMPSAIRRIDIAGRDVTEYL 193          

HSP 3 Score: 36.5798 bits (83), Expect = 1.489e-34
Identity = 16/32 (50.00%), Postives = 23/32 (71.88%), Query Frame = 2
Query:  104 VMDNRNVVVCDNGTGYVKCGFAGENFPNSVFP 199
            V+ N+ + + DNG+G +K GFAGE+ P S FP
Sbjct:    6 VLTNQPICI-DNGSGVIKAGFAGEDQPKSFFP 36          
BLAST of FC923633 vs. ExPASy Swiss-Prot
Match: ACT3_TOBAC (Actin-54 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.635e-33
Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  196 PMCVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG 546
            P  VGRP  R+   ++    KD  VG  A   R  L + YP+ +GI  NW+DM ++W H F++EL++ P E  +LLT+ PLNP  NREKM + MFE ++   +++ IQAVL+LYA G
Sbjct:   14 PSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIASNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFSVPAMYVAIQAVLSLYASG 128          

HSP 2 Score: 54.299 bits (129), Expect = 1.635e-33
Identity = 22/41 (53.66%), Postives = 32/41 (78.05%), Query Frame = 2
Query:  575 TGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYL 697
            TG+V+DSGDGV+H VP+ +GY+ PH   R+++AGR +T  L
Sbjct:  133 TGIVLDSGDGVSHHVPIYEGYALPHAILRLDLAGRDLTDSL 173          
BLAST of FC923633 vs. ExPASy Swiss-Prot
Match: ACTZ_NEUCR (Actin-like protein OS=Neurospora crassa GN=ro-4 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.655e-32
Identity = 49/118 (41.53%), Postives = 70/118 (59.32%), Query Frame = 1
Query:  196 PMCVGRPM-LRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG 546
            P  VGRP  LR     +E E+   I   AA +LR  L + YP+ +GIV +W+DM ++W + +   LK    E  +LLT+PPLNP  NR+   + +FE +N   ++  IQAVL+LYA G
Sbjct:   34 PSFVGRPKHLRVLAGALEGEV--FIGQKAASELRGLLKIRYPLEHGIVTDWDDMEKIWAYVYDEGLKTLSEEHPVLLTEPPLNPRANRDTAAQILFETFNVPALYTSIQAVLSLYASG 149          

HSP 2 Score: 58.5362 bits (140), Expect = 1.655e-32
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 2
Query:  545 VLMKMPEGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLGDL 706
            VL     G  TG+V+DSGDGV+H VPV  G++ P+  +R++VAGR +T YL  L
Sbjct:  142 VLSLYASGRTTGVVLDSGDGVSHAVPVYQGFTVPNSIRRIDVAGRDVTEYLQTL 195          

HSP 3 Score: 33.113 bits (74), Expect = 1.655e-32
Identity = 12/25 (48.00%), Postives = 18/25 (72.00%), Query Frame = 2
Query:  125 VVCDNGTGYVKCGFAGENFPNSVFP 199
            +V DNG+G ++ GFAG++ P   FP
Sbjct:   10 IVLDNGSGTIRAGFAGDDVPKCHFP 34          
BLAST of FC923633 vs. ExPASy Swiss-Prot
Match: ACT27_DICDI (Putative actin-27 OS=Dictyostelium discoideum GN=act27 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.342e-31
Identity = 41/104 (39.42%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  235 SLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG 546
            S++  +  D+ VG  A   R  L + YP+  GI+ NW+DM ++W HAF++EL + P E  ++L++ PLNP +NREKM + MFE +    ++++ QAV ++Y  G
Sbjct:   33 SIVGIDQNDSYVGNEAQSKRGILTLKYPIERGIITNWDDMEKIWHHAFYNELGVAPEENIVVLSESPLNPEENREKMAQIMFETFKTPAIYVENQAVFSIYNSG 136          

HSP 2 Score: 48.9062 bits (115), Expect = 1.342e-31
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 2
Query:  566 GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYL 697
            G +TG+V+DSGD  +HVVPV +G + PH T  +  AG  +T  +
Sbjct:  136 GRMTGIVLDSGDSASHVVPVYEGLALPHATSSLGFAGCDLTDQM 179          

HSP 3 Score: 33.4982 bits (75), Expect = 1.342e-31
Identity = 14/31 (45.16%), Postives = 18/31 (58.06%), Query Frame = 2
Query:  113 NRNVVVCDNGTGYVKCGFAGENFPNSVFPCV 205
            N   +V DNG+   K GF GE  P+S FP +
Sbjct:    4 NVQAIVIDNGSDTCKAGFVGEEAPHSEFPSI 34          
BLAST of FC923633 vs. ExPASy Swiss-Prot
Match: ACT_VOLCA (Actin OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.215e-31
Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  196 PMCVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG 546
            P  VGRP  R+   ++    KD+ VG  A   R  L + YP+ +GIV NW+DM ++W H FF+EL++ P E  +LLT+ PLNP  NREKM + MFE +N   +++ IQAVL+LYA G
Sbjct:   34 PSIVGRP--RHTGVMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFFNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG 148          

HSP 2 Score: 42.3578 bits (98), Expect = 3.215e-31
Identity = 16/29 (55.17%), Postives = 23/29 (79.31%), Query Frame = 2
Query:  119 NVVVCDNGTGYVKCGFAGENFPNSVFPCV 205
            + +VCDNG+G VK GFAG++ P +VFP +
Sbjct:    8 SALVCDNGSGMVKAGFAGDDAPRAVFPSI 36          
BLAST of FC923633 vs. ExPASy Swiss-Prot
Match: ACT_CHLRE (Actin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.215e-31
Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  196 PMCVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG 546
            P  VGRP  R+   ++    KD+ VG  A   R  L + YP+ +GIV NW+DM ++W H FF+EL++ P E  +LLT+ PLNP  NREKM + MFE +N   +++ IQAVL+LYA G
Sbjct:   34 PSIVGRP--RHTGVMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFFNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG 148          

HSP 2 Score: 42.3578 bits (98), Expect = 3.215e-31
Identity = 16/29 (55.17%), Postives = 23/29 (79.31%), Query Frame = 2
Query:  119 NVVVCDNGTGYVKCGFAGENFPNSVFPCV 205
            + +VCDNG+G VK GFAG++ P +VFP +
Sbjct:    8 SALVCDNGSGMVKAGFAGDDAPRAVFPSI 36          
The following BLAST results are available for this feature:
BLAST of FC923633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
ARP2_SCHPO1.015e-4957.26Actin-related protein 2 OS=Schizosaccharomyces pom... [more]
ACT_EUPCR3.207e-3944.33Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1[more]
ACT3_SOYBN1.335e-3641.88Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2[more]
ACT7_SOLTU2.382e-3545.45Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1[more]
ACTZ_PNECA1.489e-3440.68Actin-2 OS=Pneumocystis carinii PE=2 SV=1[more]
ACT3_TOBAC1.635e-3344.44Actin-54 (Fragment) OS=Nicotiana tabacum PE=3 SV=1[more]
ACTZ_NEUCR1.655e-3241.53Actin-like protein OS=Neurospora crassa GN=ro-4 PE... [more]
ACT27_DICDI1.342e-3139.42Putative actin-27 OS=Dictyostelium discoideum GN=a... [more]
ACT_VOLCA3.215e-3147.01Actin OS=Volvox carteri PE=3 SV=1[more]
ACT_CHLRE3.215e-3147.01Actin OS=Chlamydomonas reinhardtii PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31707C09EF StrClemenN Citrus clementina cDNA clone C31707C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923633 ID=FC923633; Name=FC923633; organism=Citrus clementina; type=EST; length=706bp
TTTAGAAGCTCCTCCGGTTGAAGGAAAGCGGTTAGATGAAGAAAGCAGCT
ACTAATCAGCAACACTCCCACTTACTCCTCCGCTTGGGCAACAGCATCAC
CGTGTAATGGACAACAGAAACGTCGTCGTTTGCGACAATGGCACTGGGTA
TGTCAAGTGCGGATTCGCAGGGGAAAATTTTCCTAACTCTGTGTTCCCAT
GTGTGTGGGAAGGCCAATGCTACGCTACGAAGAATCACTCATGGAACAAG
AGCTCAAGGATACTATTGTTGGAGCTGCAGCTTTAGACTTGCGGCATCAA
CTGGATGTATCTTATCCTGTTAATAATGGTATAGTGCAAAACTGGGAGGA
TATGGGTCAAGTGTGGGATCATGCTTTTTTCAGTGAATTAAAAATTGACC
CACCAGAATGTAAGATATTACTCACAGATCCACCTCTTAATCCAGCTAAA
AATCGTGAAAAAATGGTCGAGACAATGTTTGAGAAATACAACTTTGCTGG
CGTCTTCATTCAAATCCAAGCTGTTTTAACTTTGTATGCTCAAGGTGCTT
ATGAAGATGCCTGAAGGTTTGCTGACTGGACTAGTTATTGACTCTGGTGA
TGGTGTCACTCATGTGGTTCCTGTTGTTGATGGCTACTCATTCCCACATC
TTACTAAGCGAATGAATGTAGCTGGTCGGCACATAACATCCTATCTTGGT
GATTTA
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