FC923633

Overview
NameFC923633
Unique NameFC923633
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923633 vs. ExPASy Swiss-Prot
Match: ACL6A_HUMAN (Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 5.121e-11
Identity = 28/85 (32.94%), Postives = 46/85 (54.12%), Query Frame = 1
Query:  292 RHQLDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG 546
            R  ++   P+ NG+V++W+    + DH +   +K +     +L+++ P N    REK+ E MFE YN    F+   AVLT +A G
Sbjct:   79 RENMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYNIPAFFLCKTAVLTAFANG 163          

HSP 2 Score: 25.7942 bits (55), Expect = 5.121e-11
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 2
Query:  110 DNRNVVVCDNGTGYVKCGFAGENFPNSVFP 199
            D    +V D G+  V+ G+AGE+ P   FP
Sbjct:    9 DEVGALVFDIGSYTVRAGYAGEDCPKVDFP 38          
BLAST of FC923633 vs. ExPASy Swiss-Prot
Match: ARP4_SCHPO (Actin-related protein 4 OS=Schizosaccharomyces pombe GN=arp4 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 6.645e-11
Identity = 27/82 (32.93%), Postives = 44/82 (53.66%), Query Frame = 1
Query:  301 LDVSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG 546
            +++   + NG V+NW+    +W +    +LK +P E  IL+T+P  NP +NR K +ETMFE       ++  Q     +A G
Sbjct:   63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASG 144          

HSP 2 Score: 29.261 bits (64), Expect = 6.645e-11
Identity = 11/30 (36.67%), Postives = 18/30 (60.00%), Query Frame = 2
Query:  110 DNRNVVVCDNGTGYVKCGFAGENFPNSVFP 199
            D  + +V D G+ + + GF+GE+ P  V P
Sbjct:    9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLP 38          
The following BLAST results are available for this feature:
BLAST of FC923633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
ACL6A_HUMAN5.121e-1132.94Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE... [more]
ARP4_SCHPO6.645e-1132.93Actin-related protein 4 OS=Schizosaccharomyces pom... [more]

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Properties
Property NameValue
Genbank descriptionC31707C09EF StrClemenN Citrus clementina cDNA clone C31707C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923633 ID=FC923633; Name=FC923633; organism=Citrus clementina; type=EST; length=706bp
TTTAGAAGCTCCTCCGGTTGAAGGAAAGCGGTTAGATGAAGAAAGCAGCT
ACTAATCAGCAACACTCCCACTTACTCCTCCGCTTGGGCAACAGCATCAC
CGTGTAATGGACAACAGAAACGTCGTCGTTTGCGACAATGGCACTGGGTA
TGTCAAGTGCGGATTCGCAGGGGAAAATTTTCCTAACTCTGTGTTCCCAT
GTGTGTGGGAAGGCCAATGCTACGCTACGAAGAATCACTCATGGAACAAG
AGCTCAAGGATACTATTGTTGGAGCTGCAGCTTTAGACTTGCGGCATCAA
CTGGATGTATCTTATCCTGTTAATAATGGTATAGTGCAAAACTGGGAGGA
TATGGGTCAAGTGTGGGATCATGCTTTTTTCAGTGAATTAAAAATTGACC
CACCAGAATGTAAGATATTACTCACAGATCCACCTCTTAATCCAGCTAAA
AATCGTGAAAAAATGGTCGAGACAATGTTTGAGAAATACAACTTTGCTGG
CGTCTTCATTCAAATCCAAGCTGTTTTAACTTTGTATGCTCAAGGTGCTT
ATGAAGATGCCTGAAGGTTTGCTGACTGGACTAGTTATTGACTCTGGTGA
TGGTGTCACTCATGTGGTTCCTGTTGTTGATGGCTACTCATTCCCACATC
TTACTAAGCGAATGAATGTAGCTGGTCGGCACATAACATCCTATCTTGGT
GATTTA
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