FC923635

Overview
NameFC923635
Unique NameFC923635
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1340..2045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.647e-47
Identity = 106/192 (55.21%), Postives = 134/192 (69.79%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 578
            VAQIR  +E  + +Y+REKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNAT+AA           TLL LS  + A K  L N EE+VGADIV RAL  PL  IA NAG+ GSVV EKVL  +   +G++A TG Y D+ A GI+DP KVVR  L++A+S+A  +L ++ +VVE  +PEP    G
Sbjct:  345 VAQIRKQLETTDSEYDREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFKANL-NAEEQVGADIVCRALQAPLYQIAHNAGLEGSVVVEKVLEKE-MPFGFDALTGTYVDMFAQGIVDPAKVVRSALQNAASIAAMYLTTEAIVVE--KPEPKTKTG 532          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH601_RHORT (60 kDa chaperonin 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL1 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.632e-47
Identity = 99/199 (49.75%), Postives = 138/199 (69.35%), Query Frame = 3
Query:    6 AQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGY 602
            AQIR  IE+   DY+REKL ER+AKLSGGVAVI+VG  +E E+KEKK RV+DA++AT+AA            LL  +  +DA+     N ++KVG +IV+RAL  P++ IA+NAGV+G+VV+ K+L S +  +GYNA TG YE+L+  G+IDPTKVVR  L+ A+SVA   + ++ +V EI E +PA+PAG  M +  +
Sbjct:  347 AQIRATIEDTTSDYDREKLQERLAKLSGGVAVIRVGGASEVEVKEKKDRVDDAMHATRAAVEEGIIAGGGVALLHAAKALDALSPA--NADQKVGIEIVRRALQAPVRQIAENAGVDGAVVAGKLLESSDADFGYNAQTGVYENLVKVGVIDPTKVVRTALQGAASVASLLITTEAMVAEIPEKKPALPAGGGMGDMDF 543          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH601_SYNS3 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9311) GN=groL1 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.780e-46
Identity = 102/199 (51.26%), Postives = 139/199 (69.85%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 599
            VA I+  ++N + +Y++EKLNERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AA           TLL +S+++DA+   L+ D +K G +IV+RAL  PL+ IA+NAG NG VV ++V +S     G+NA TGN+EDLM AGI+D +KVVR  L+ A S+A   + ++ VV +  +PEP  PAG   D  G
Sbjct:  344 VASIKRELDNTDSEYDQEKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAVEEGIVAGGGSTLLHISAELDALTSGLEGD-QKTGVEIVQRALSAPLRQIAENAGSNGDVVVDRVRNSGE---GFNALTGNFEDLMNAGILDASKVVRLALQDAVSIASLVVTTEVVVAD--KPEPPAPAGGGGDPMG 536          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_SOLUE (60 kDa chaperonin OS=Solibacter usitatus (strain Ellin6076) GN=groL PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.154e-46
Identity = 99/194 (51.03%), Postives = 131/194 (67.53%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 584
            + Q+R  I+    DY+REKL ER+AKL+GGVAVI+VGA TETE+KEKK RVEDAL+AT+AA            LLR +  +   K  +D DE+ +G  IVKRA   PL+ I  N+G  G++V +KV  + N+ YGYNAAT  YEDL+AAG+IDPTKV R  L+HA+S+A   L ++ ++ EI E + A PAG P
Sbjct:  344 IKQLRAQIDETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRAAKALATFK--VDGDEQ-IGVSIVKRACEEPLRQIVSNSGTEGAIVVDKVRENANNNYGYNAATDTYEDLVAAGVIDPTKVTRSALQHAASIAGLMLTTEAMIAEIPEKKSA-PAGGP 533          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_DESOH (60 kDa chaperonin OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=groL PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.154e-46
Identity = 107/203 (52.71%), Postives = 132/203 (65.02%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMDNSGYG 605
            V QIR  IE+   DY+REKL ER+AKL GGVAVI VGA TETE+KEKK RVEDALNAT+AA            L+R    +DA+ +     EEK+G  +V RA+  PL+ IA NAGV GSVV EKV  ++   +GYNAATG+Y DL+AAG+IDPTKVVR  L++A SVA   L ++ ++ E   KE   AMP G      G G
Sbjct:  346 VKQIRAQIEDTTSDYDREKLQERLAKLVGGVAVINVGAATETEMKEKKARVEDALNATRAAVEEGVLPGGGVALVRC---LDALSKIKIKSEEKLGVKVVMRAIEEPLRRIANNAGVEGSVVIEKV-KNETGSFGYNAATGDYGDLIAAGVIDPTKVVRFALQNACSVASVMLTTEAMIAEKPSKEEPAAMPGGGMGGMGGMG 544          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.154e-46
Identity = 103/199 (51.76%), Postives = 136/199 (68.34%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 599
            V Q+R  ++  + +Y++EKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNATKAA           TL+ L+  ++++K  L  DEEKVGAD+V  AL  PL  IA NAG  G+VV EKV  +D   YGYNA T  YED++AAG++DP KVVR  L++A S+A   L ++ +VV+  +PEPA  A   M   G
Sbjct:  344 VEQLRRQLDETDSEYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGTTLIHLTKTIESVKAQL-KDEEKVGADLVGIALEAPLTQIADNAGKEGAVVVEKVRDAD-FSYGYNAMTDTYEDMIAAGVVDPAKVVRSGLQNAGSIAGMVLTTEALVVD--KPEPAGAAAPDMGGMG 538          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_GEMAT (60 kDa chaperonin OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=groL PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.099e-45
Identity = 95/194 (48.97%), Postives = 132/194 (68.04%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 584
            V +IR  I+ +  DY+REKL ER+AKL+GGVAVI VGA TE E+KEKK RVEDAL+AT+AA            L+R    +  +K  +   +E++G DIV+RA+  PL++I +NAG  GS+V EK+ ++    +GYNA T  YEDL+ AG+IDPTKV R  L++A+S+A   L ++ ++VE KE +PA PAG P
Sbjct:  346 VREIRGAIDKSTSDYDREKLQERLAKLAGGVAVINVGAATEAEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRAQHVLKDVK--VAERDEQIGVDIVRRAIEEPLRMIVQNAGGEGSIVVEKIRTAKETSFGYNALTDVYEDLVQAGVIDPTKVTRTALQNAASIAGLLLTTEALIVEKKEDKPAAPAGGP 537          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.099e-45
Identity = 100/201 (49.75%), Postives = 136/201 (67.66%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 605
            +AQI   +E+ + D++REKL ER+AKL+GGVAVI+VGA TETELK++KLR+EDALNATKAA           TLL L+ K+DAIK  L  D+EK GAD++ RAL  PL+ IA NAGV GSV+++KV   D    GY+A  G + D++AAG+ DP KVVR  L++A+S+A   L ++ ++V+  +PE         D  G G
Sbjct:  345 IAQIHKQMEDTDSDFDREKLQERLAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLLHLTKKIDAIKAGL-ADDEKTGADLIARALEAPLRQIADNAGVEGSVIAQKVRELD-FNIGYDAMKGEFVDMLAAGVADPAKVVRSALQNAASIAAMVLTTEVLIVD--KPEKKKAGAGAPDMGGMG 541          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH601_GLUDA (60 kDa chaperonin 1 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.099e-45
Identity = 99/198 (50.00%), Postives = 137/198 (69.19%), Query Frame = 3
Query:    9 QIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSG 599
            QIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DAL+AT+AA            L R S+ +  +     ND+++VGA+I+++AL  PL+ IA NAG +G+V++ KVL S+++ YG++A  G+Y+DL+AAGIIDPTKVVR  L+ ASSVA   + ++ +V E  E + PAMPAG  M   G
Sbjct:  348 QIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALARASTALGNLH--FHNDDQRVGAEIIRKALQAPLRQIAHNAGEDGAVIAGKVLESNDYNYGFDAQIGDYKDLVAAGIIDPTKVVRTALQDASSVAGLLITTEAMVAEKPEKKAPAMPAGGGMGGMG 543          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_WOLSU (60 kDa chaperonin OS=Wolinella succinogenes GN=groL PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.047e-45
Identity = 102/199 (51.26%), Postives = 131/199 (65.83%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 599
            VAQIRT IE    DY+REKL ER+AKLSGGVAVI+VGA +E E+KEKK RV+DAL+ATKAA            L+R ++KV   K  L  DE K+G +I+KRA+  PLK IA+NAG +  VV+  V  + N  +G+NAA G Y D+ A GIIDP KV R  L++A SV+   L ++  + EIKE +PAMP  + M   G
Sbjct:  346 VAQIRTQIEATTSDYDREKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRAAAKV---KLELSGDE-KIGYEIIKRAISAPLKQIAQNAGFDAGVVANNVEQNGNENFGFNAANGEYVDMFAEGIIDPLKVARIALQNAVSVSSLLLTTEATISEIKEDKPAMPDMSGMGGMG 540          
The following BLAST results are available for this feature:
BLAST of FC923635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_SYNJA5.647e-4755.2160 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]
CH601_RHORT9.632e-4749.7560 kDa chaperonin 1 OS=Rhodospirillum rubrum (stra... [more]
CH601_SYNS34.780e-4651.2660 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH60_SOLUE8.154e-4651.0360 kDa chaperonin OS=Solibacter usitatus (strain E... [more]
CH60_DESOH8.154e-4652.7160 kDa chaperonin OS=Desulfococcus oleovorans (str... [more]
CH601_ACAM18.154e-4651.7660 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH60_GEMAT3.099e-4548.9760 kDa chaperonin OS=Gemmatimonas aurantiaca (stra... [more]
CH602_GLOVI3.099e-4549.7560 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH601_GLUDA3.099e-4550.0060 kDa chaperonin 1 OS=Gluconacetobacter diazotrop... [more]
CH60_WOLSU4.047e-4551.2660 kDa chaperonin OS=Wolinella succinogenes GN=gro... [more]

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Properties
Property NameValue
Genbank descriptionC31707C11EF StrClemenN Citrus clementina cDNA clone C31707C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923635 ID=FC923635; Name=FC923635; organism=Citrus clementina; type=EST; length=706bp
GAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAA
AGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCCGT
CATACAGGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGA
GAGTCGAAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATC
GTAGTTGGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGGATGC
CATTAAGGAAACCCTTGATAATGATGAAGAAAAGGTTGGAGCAGATATTG
TTAAAAGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGT
GTTAATGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAA
ATATGGATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAG
GAATTATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCC
TCGGTGGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAA
GGAGCCTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGAT
ATGGATACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTT
CTGACTTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCT
TCTTTC
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