FC923635

Overview
NameFC923635
Unique NameFC923635
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH602_RHIEC (60 kDa chaperonin 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL2 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.903e-45
Identity = 99/197 (50.25%), Postives = 130/197 (65.99%), Query Frame = 3
Query:    6 AQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 590
            AQIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KEKK RV+DAL+AT+AA            LLR    +D+IK    ND+++VG DIV+RA+  P++ IA+NAG  GS++  K+    +  YG+NA TG Y DL A G+IDP KVVR  L+ A+SVA   + ++ ++ E   KE  PAMPAG  MD
Sbjct:  347 AQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALHATRAAVEEGILPGGGVALLRAVKALDSIKTA--NDDQRVGVDIVRRAIEAPVRQIAENAGAEGSIIVGKLREKSDFSYGWNAQTGEYGDLYAQGVIDPAKVVRTALQDAASVAGLLVTTEAMIAEKPKKEAAPAMPAGAGMD 541          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_SULSY (60 kDa chaperonin OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=groL PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.015e-45
Identity = 100/201 (49.75%), Postives = 133/201 (66.17%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP-AGNPMDNSGY 602
            + QI+  IE    +Y++EKL ER+AKL+GGVA+I+VGA TE ELKEKK RV+DA++ATKAA            + R S  +  IKE  +N ++  G  IVK A   PLK IA NAG  GSV+ EK+   DN  YG++AATG Y D++ AGIIDPTKVVR  L++A+S+A T L ++C+V EIKE E  +P AG  M +  +
Sbjct:  346 IEQIKKQIETTTSEYDKEKLQERLAKLAGGVAIIKVGAATEAELKEKKDRVDDAVHATKAAVEEGIVPGGGIAIFRASRALCNIKE--ENTDKAWGIKIVKNACKVPLKQIAYNAGFEGSVIIEKIKDVDNVNYGFDAATGEYVDMVEAGIIDPTKVVRTALQNAASIAGTMLTAECLVAEIKEKEEKLPGAGGGMGDMDF 544          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_DESVV (60 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groL PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.177e-44
Identity = 99/199 (49.75%), Postives = 128/199 (64.32%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 599
            V QIR  IE    DY+REKL ER+AKL GGVAVI VGA TETE+KEKK RVEDALNAT+AA            L+R++  +D IK    +D+E  G +I++RA+  PL+ IA NAG  GS+V E+V    +  +G+NAATG YEDL+  G+IDP KV R  L++A+SVA   L ++C + E  EP+  MP    M   G
Sbjct:  346 VKQIRAQIEETTSDYDREKLQERLAKLVGGVAVIHVGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTALVRVAKVLDDIKPA--DDDETAGVNIIRRAIEEPLRQIASNAGFEGSIVVERVREGKD-GFGFNAATGEYEDLIGVGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEPKKDMPMPGGMGGMG 541          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_DESVH (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groL PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.177e-44
Identity = 99/199 (49.75%), Postives = 128/199 (64.32%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 599
            V QIR  IE    DY+REKL ER+AKL GGVAVI VGA TETE+KEKK RVEDALNAT+AA            L+R++  +D IK    +D+E  G +I++RA+  PL+ IA NAG  GS+V E+V    +  +G+NAATG YEDL+  G+IDP KV R  L++A+SVA   L ++C + E  EP+  MP    M   G
Sbjct:  346 VKQIRAQIEETTSDYDREKLQERLAKLVGGVAVIHVGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTALVRVAKVLDDIKPA--DDDETAGVNIIRRAIEEPLRQIASNAGFEGSIVVERVREGKD-GFGFNAATGEYEDLIGVGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEPKKDMPMPGGMGGMG 541          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.177e-44
Identity = 98/191 (51.31%), Postives = 137/191 (71.73%), Query Frame = 3
Query:    6 AQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 578
            AQI+  IE  + +Y+REKL ER+AKLSGGVAVI+VGA TETELK++KLR+EDA+NATKAA            LL L++ +    ++L + EEK+GA I+++AL  PL+ IA+NAG+ GSV++EKV + +   +G+NA T  YEDL+AAGIIDP KV R  L++A+S+A   L ++C+VV+ K  +   PAG
Sbjct:  345 AQIKQQIEETDSEYDREKLQERLAKLSGGVAVIKVGAATETELKDRKLRIEDAVNATKAAIAEGIVPGGGTALLHLAAGMGGFIDSL-SGEEKIGARIIQKALEGPLRQIAENAGLEGSVIAEKVRNLE-FNFGFNAMTNEYEDLVAAGIIDPVKVTRSALQNAASIAAMVLTTECIVVD-KPEDDKTPAG 532          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.538e-44
Identity = 98/191 (51.31%), Postives = 133/191 (69.63%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 575
            +AQ++  +   +  Y+ EKL ERIAKLSGGVAVI+VGA TETEL+++KLR+EDA NAT AA            L+ LS+ + AIKET ++ +E++GADIV++AL  P  LIA+NAGV G VV EK++ SD  + GYNA T  YE+L  AG+IDP KV RC L++A+SVA   L +  +VV+  +P+P  PA
Sbjct:  390 IAQLKKELFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVIPAIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSD-WENGYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVD--KPKPKAPA 577          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH602_RHORT (60 kDa chaperonin 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL2 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.538e-44
Identity = 96/200 (48.00%), Postives = 137/200 (68.50%), Query Frame = 3
Query:    6 AQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 605
            +QIR  IE+   DY+REKL ER+AKL+GGVAVI+VG  TETE+KEKK RV+DA++AT+AA            LL     +D++K    N ++ VG +IV+RAL  P++ IA+NAGV+G+VV+ K+L + +  +GYNA TG YE+L+ AG+IDPTKVVR  L+ A+S+A   + ++ +V EI E + AMP+ +     G G
Sbjct:  347 SQIRANIEDTSSDYDREKLQERLAKLAGGVAVIKVGGATETEVKEKKDRVDDAMHATRAAVEEGVVAGGGVALLHAIRSLDSVKGA--NPDQNVGIEIVRRALQAPVRQIAENAGVDGAVVAGKLLENSDTDFGYNAQTGIYENLVTAGVIDPTKVVRAALQGAASIAGLLITTEAMVAEIPEKKDAMPSPDMGGMGGMG 544          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.008e-44
Identity = 95/194 (48.97%), Postives = 135/194 (69.59%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 584
            ++Q++  +   +  Y+ EKL ERIAKL+GGVAVI+VGA TETEL+++KLR+EDA NAT AA           TL+ LS+ + AIKE L++ +E++GADIV++AL  P  LIA+NAG+ G VV EK++ S+  + GYNA T  YE+L+ AG+IDP KV RC L++A+SVA   L +  +VV+  +P+P  P   P
Sbjct:  350 ISQLKKELSETDSVYDSEKLAERIAKLAGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSE-WEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVD--KPKPKAPTAAP 540          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_ARCB4 (60 kDa chaperonin OS=Arcobacter butzleri (strain RM4018) GN=groL PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.623e-44
Identity = 101/200 (50.50%), Postives = 130/200 (65.00%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLD-NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 599
            V QI+  I N   DY+REKL ER+AKLSGGVAVI+VGA TETE+KEKK RV+DAL+AT+AA            L++ S KV+     LD   +E++GADIV RA+  PLK IA NAG +  VV+ +V  S N   G+NAATG Y D+  AGI+DP KV R  +++A SVA   L ++  V +IKE +PAMP+   M   G
Sbjct:  345 VNQIKAEISNTTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATRAAVEEGIVIGGGAALIKASKKVN-----LDLTGDERIGADIVLRAISAPLKQIAINAGFDAGVVANEVEKSSNENLGFNAATGEYVDMFEAGIVDPAKVERVAMQNAVSVASLLLTTEATVSDIKEDKPAMPSMPDMGGMG 539          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_ALKOO (60 kDa chaperonin OS=Alkaliphilus oremlandii (strain OhILAs) GN=groL PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.623e-44
Identity = 96/192 (50.00%), Postives = 133/192 (69.27%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 578
            V QI+  IE    D+++EKL ER+AKLSGGVAVIQVGA TETELKE+KLR+EDALNAT+A            +L+ +   V+A+ ET + D E+ G  I++RAL  PL+ IA NAG+ GSV+ EKV+SS+    G++A T  Y +++ AGI+DPTKV R  L++A+SV+   L ++  +V+IK  EP+MP G
Sbjct:  344 VNQIKRQIEETTSDFDKEKLQERLAKLSGGVAVIQVGAATETELKERKLRIEDALNATRAGVEEGMVAGGGASLVHVIPAVEALLETTEGD-ERTGVKIIRRALEEPLRQIAANAGLEGSVIVEKVMSSEK-GIGFDALTEKYVNMIEAGIVDPTKVTRSALQNAASVSAMLLTTEGAIVDIKSDEPSMPGG 533          
The following BLAST results are available for this feature:
BLAST of FC923635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_RHIEC6.903e-4550.2560 kDa chaperonin 2 OS=Rhizobium etli (strain CFN ... [more]
CH60_SULSY9.015e-4549.7560 kDa chaperonin OS=Sulfurihydrogenibium sp. (str... [more]
CH60_DESVV1.177e-4449.7560 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH60_DESVH1.177e-4449.7560 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH601_GLOVI1.177e-4451.3160 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
RUBA_ARATH1.538e-4451.31RuBisCO large subunit-binding protein subunit alph... [more]
CH602_RHORT1.538e-4448.0060 kDa chaperonin 2 OS=Rhodospirillum rubrum (stra... [more]
RUB1_BRANA2.008e-4448.97RuBisCO large subunit-binding protein subunit alph... [more]
CH60_ARCB42.623e-4450.5060 kDa chaperonin OS=Arcobacter butzleri (strain R... [more]
CH60_ALKOO2.623e-4450.0060 kDa chaperonin OS=Alkaliphilus oremlandii (stra... [more]

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Properties
Property NameValue
Genbank descriptionC31707C11EF StrClemenN Citrus clementina cDNA clone C31707C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923635 ID=FC923635; Name=FC923635; organism=Citrus clementina; type=EST; length=706bp
GAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAA
AGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCCGT
CATACAGGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGA
GAGTCGAAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATC
GTAGTTGGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGGATGC
CATTAAGGAAACCCTTGATAATGATGAAGAAAAGGTTGGAGCAGATATTG
TTAAAAGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGT
GTTAATGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAA
ATATGGATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAG
GAATTATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCC
TCGGTGGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAA
GGAGCCTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGAT
ATGGATACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTT
CTGACTTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCT
TCTTTC
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