FC923635

Overview
NameFC923635
Unique NameFC923635
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH602_SYNPW (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH7803) GN=groL2 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.623e-44
Identity = 94/200 (47.00%), Postives = 134/200 (67.00%), Query Frame = 3
Query:    9 QIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 608
            QI+  ++  E  Y++EKL ER+AKL+GGVAV++VGA TETE+K+KKLR+EDA+NATKAA           TL  L+  ++    +  + EE +GA+IV  AL  PL  IA+NAGVNG+VV+E V  + +   GYNAA G+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG  M    + Y
Sbjct:  346 QIKKQMDETESTYDKEKLQERLAKLAGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALEQWAASTLSGEELIGANIVAAALTAPLMRIAENAGVNGAVVAENV-KAKSFNEGYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAGGGMGGGDFDY 544          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH601_SYNS9 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9902) GN=groL1 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.623e-44
Identity = 94/200 (47.00%), Postives = 134/200 (67.00%), Query Frame = 3
Query:    9 QIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 608
            QI+  ++  +  Y++EKL ER+AKL+GGVAV++VGA TETE+K+KKLR+EDA+NATKAA           TL  L+  ++       + EE +GA+IV  AL  PL  IA+NAG NG+VV+E V S  N++ GYNAA G+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG  M    + Y
Sbjct:  346 QIKKQMDETDSTYDKEKLQERLAKLAGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALEEWANGNLSGEELIGANIVAAALTAPLMRIAENAGANGAVVAENVKSRSNNE-GYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAAPAGGGMGGGDFDY 544          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH601_ANAVT (60 kDa chaperonin 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL1 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.623e-44
Identity = 97/202 (48.02%), Postives = 131/202 (64.85%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 608
            V QIR  +E  E  Y++EKL ER+AKLSGGVAV++VGA TETE+K+KKLR+EDA+NATKAA           TL  L+ +++    +   DEE  GA IV RAL  PLK IA+NAG NG+V++E+V        G+NAAT  + D+  AGI+DP KV R  L++A+S+A   L ++C+VV+  EP+ A PAG       + Y
Sbjct:  344 VEQIRRQMEETESSYDKEKLQERLAKLSGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLTPELEVWANSNLKDEELTGALIVARALPAPLKRIAENAGQNGAVIAERV-KEKAFNVGFNAATNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEPKDAAPAGAGAGGGDFDY 544          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH601_SYNPW (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH7803) GN=groL1 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.426e-44
Identity = 101/200 (50.50%), Postives = 132/200 (66.00%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA-MPAGNPMDNSG 599
            VA IR  +EN++ +Y+REKLNERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AA           TL++L+  +D +   L  D ++ G +IV RAL  PL+ IA NAG NG VV E+V  S     G+NA TG YE+L+ AGI+D  KVVR  L+ A S+A   + ++ VV +  EP  A  P G+PM   G
Sbjct:  344 VASIRRELENSDSEYDREKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAVEEGIVAGGGSTLIQLAGSLDGLANQLHGD-QRTGVEIVHRALSAPLRQIAINAGANGDVVVEQVQRSGQ---GFNALTGGYENLLEAGILDAAKVVRLGLQDAVSIASLLITTEVVVADKPEPPAAPAPGGDPMGGMG 539          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH602_ROSDO (60 kDa chaperonin 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=groL2 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.474e-44
Identity = 96/201 (47.76%), Postives = 132/201 (65.67%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 605
            VAQIRT IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DALNAT+AA            L++    ++ +  T DN+++ VG  IV++AL  PL+ IA+NAGV+GSVV+ K+  SD+ K+G+NA T  Y D+ A G+IDP KVVR  L+ A+S+A   + ++ +V +    E A P G   D  G G
Sbjct:  346 VAQIRTQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQAGKHLEGL--TGDNNDQNVGISIVRKALEAPLRQIAENAGVDGSVVAGKIRESDDLKFGFNAQTEEYGDMFAFGVIDPAKVVRTALQDAASIAGLLITTEAMVADRPAKEGAAPGGGMPDMGGMG 544          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_RUBXD (60 kDa chaperonin OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=groL PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.844e-44
Identity = 97/192 (50.52%), Postives = 130/192 (67.71%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 578
            + QI+  +E  + D++REKL ER+AKL+GGVAVI+VGA TETELKEKK RVEDAL+AT+AA            LL+    V  + + LD D E+ GA IV RAL  P++ IA+NAG +GS+V +KV  +     G+NA TG YEDL+AAG+IDP  V R  L++A+S+A   + +D VV E +E +PAMP G
Sbjct:  345 INQIKAELETTDSDFDREKLQERLAKLAGGVAVIKVGAATETELKEKKHRVEDALSATRAALEEGIVPGGGVALLKAQKAVGELLDELDGD-ERTGARIVYRALEEPIRQIAENAGADGSIVVDKV-RAQGDSIGFNALTGGYEDLVAAGVIDPAMVTRSALQNAASIAGLLVTTDVVVAEPEEEQPAMPGG 534          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH602_SYNS9 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9902) GN=groL2 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.844e-44
Identity = 101/201 (50.25%), Postives = 133/201 (66.17%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG--NPMDNSG 599
            VA I+  ++  E DY+REKLNERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AA           TLL+L+  ++A+   LD D ++ G +IV+R+L  P+  IA NAG NG VV E +  S     G+NA TG YEDLMA GI+D TKVVR  ++ A S+A   + ++ V+ +  EPEP   AG  +PM   G
Sbjct:  344 VAAIKRELDATESDYDREKLNERIAKLAGGVAVIKVGAATETELKNRKLRIEDALNATRAAVEEGIVAGGGSTLLQLAEDLNALAAQLDGD-QRTGVEIVQRSLTAPVHQIATNAGHNGDVVIETMRQSGQ---GFNALTGVYEDLMATGIVDATKVVRLAVQDAVSIASLLVTTEVVIADKPEPEPPAGAGGEDPMGGMG 540          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH601_PROMA (60 kDa chaperonin 1 OS=Prochlorococcus marinus GN=groL1 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.844e-44
Identity = 97/204 (47.55%), Postives = 135/204 (66.18%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA-----GNPMDNSG 599
            VA I+  ++  + DY++EKLNERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AA           TL++L  ++D++ ++LD D +  G DI+K+AL  P K IA NAG NG VV  ++        G+NAATG YEDL++AGIID  KV+R  L+ A S+A   + ++ ++ +  +PEP  PA     G+PM   G
Sbjct:  344 VASIKRELDQTDSDYDKEKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAVEEGIVAGGGSTLIKLGEELDSLSKSLDGD-QATGVDIIKKALSAPAKQIALNAGENGDVVVSEIQRLGK---GFNAATGQYEDLISAGIIDAVKVIRLALQDAVSIASLLITTEVIIAD--KPEPPSPAGGEGGGDPMGGMG 541          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH602_ANADE (60 kDa chaperonin 2 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=groL2 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.632e-44
Identity = 100/199 (50.25%), Postives = 125/199 (62.81%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 599
            V  IR  IE    DY+REKL ER+AKL GGVAVI VGA TETE+KEKK RVEDAL+AT+AA             LR    ++ +K    N+ EKVG DIV+RA+  PL+ I+ N G  GS+V  KV  +    +G+NAATG YEDL+ AG+IDPTKV R  L++A+SVA   L +  +V E  + E A PAG  M   G
Sbjct:  346 VKTIRAQIEETTSDYDREKLQERLAKLVGGVAVINVGAATETEMKEKKARVEDALHATRAAVEEGIVPGGGVAYLRCVKALEGVKV---NEGEKVGLDIVRRAIEEPLRQISGNGGYEGSIVVNKVKEAKEAAFGFNAATGEYEDLVKAGVIDPTKVSRSALQNAASVASLMLTTMAMVAEKPKEESAAPAGGGMGGMG 541          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH601_NITWN (60 kDa chaperonin 1 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL1 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.632e-44
Identity = 94/198 (47.47%), Postives = 131/198 (66.16%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 590
            V QI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DA++AT+AA            LLR    +DA+K   DN ++K G DIV+RA+  P + I +NAG +GS+V  K+L  + + +G+NAATG Y+DL+  G+IDP KVVR  L+ A+SVA   + ++ +V E   K+  PA+P G  MD
Sbjct:  346 VTQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGILPGGGVALLRALKALDAVKP--DNPDQKAGVDIVRRAIQVPARQIIQNAGEDGSLVVGKLLEKNTYNWGFNAATGEYQDLVGVGVIDPAKVVRTALQDAASVASLLITTEALVAEKPKKDVAPALPPGGGMD 541          
The following BLAST results are available for this feature:
BLAST of FC923635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_SYNPW2.623e-4447.0060 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH601_SYNS92.623e-4447.0060 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH601_ANAVT2.623e-4448.0260 kDa chaperonin 1 OS=Anabaena variabilis (strain... [more]
CH601_SYNPW3.426e-4450.5060 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]
CH602_ROSDO4.474e-4447.7660 kDa chaperonin 2 OS=Roseobacter denitrificans (... [more]
CH60_RUBXD5.844e-4450.5260 kDa chaperonin OS=Rubrobacter xylanophilus (str... [more]
CH602_SYNS95.844e-4450.2560 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH601_PROMA5.844e-4447.5560 kDa chaperonin 1 OS=Prochlorococcus marinus GN=... [more]
CH602_ANADE7.632e-4450.2560 kDa chaperonin 2 OS=Anaeromyxobacter dehalogena... [more]
CH601_NITWN7.632e-4447.4760 kDa chaperonin 1 OS=Nitrobacter winogradskyi (s... [more]

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Properties
Property NameValue
Genbank descriptionC31707C11EF StrClemenN Citrus clementina cDNA clone C31707C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923635 ID=FC923635; Name=FC923635; organism=Citrus clementina; type=EST; length=706bp
GAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAA
AGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCCGT
CATACAGGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGA
GAGTCGAAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATC
GTAGTTGGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGGATGC
CATTAAGGAAACCCTTGATAATGATGAAGAAAAGGTTGGAGCAGATATTG
TTAAAAGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGT
GTTAATGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAA
ATATGGATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAG
GAATTATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCC
TCGGTGGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAA
GGAGCCTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGAT
ATGGATACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTT
CTGACTTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCT
TCTTTC
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