FC923635

Overview
NameFC923635
Unique NameFC923635
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_SHESH (60 kDa chaperonin OS=Shewanella sediminis (strain HAW-EB3) GN=groL PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39
Identity = 91/201 (45.27%), Postives = 127/201 (63.18%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 605
            VAQI+   E +  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  ++  + N+++K G  I  RA+  PL+ IA NAG  GSVV+  V +   + YGYNA    Y D++  GI+DPTKV R  L+ A+S+A   + ++ +V E+KE  PA   G      G G
Sbjct:  346 VAQIKIQAEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVASKIAEVE--VINEDQKHGVVIALRAMEAPLRQIAANAGEEGSVVANNVKNGSGN-YGYNAGNDTYGDMLEMGILDPTKVTRSALQFAASIAGLMITTEAMVGEVKEDAPAGDMGGMGGMGGMG 543          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_SHEHH (60 kDa chaperonin OS=Shewanella halifaxensis (strain HAW-EB4) GN=groL PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39
Identity = 90/199 (45.23%), Postives = 126/199 (63.32%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 599
            VAQI+   E +  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  ++  + N+++K G  I  RA+  PL+ IA NAG  GSVV+  V +   + YGYNA    Y D++  GI+DPTKV R  L+ ASS+A   + ++C+V ++KE    M     M   G
Sbjct:  346 VAQIKIQAEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVASKIGEVE--VLNEDQKHGVIIALRAMEAPLRQIATNAGEEGSVVANNVKNGTGN-YGYNAGNDTYGDMLEMGILDPTKVTRSALQFASSIAGLMITTECMVADVKEDAADMGGMGGMGGMG 541          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_NITMU (60 kDa chaperonin OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=groL PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39
Identity = 92/188 (48.94%), Postives = 118/188 (62.77%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA 566
            V QIR  IE A  DY++EKL ER+AKL+GGVA+I+VGA TE E+KEKK RVEDAL+AT+AA            LLR  S V  +K   DN ++  G  IV RAL  PL+ I  N G   SVV  KVL      +GYNAA+  Y D++  G++DPTKV R  L+HA+S+A   L +D +V E+ + E A
Sbjct:  346 VKQIRAQIEEATSDYDKEKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRTRSAVSNLKG--DNHDQDAGIKIVLRALEEPLRQIVANCGDEPSVVINKVLEG-TENFGYNAASSEYGDMVQMGVLDPTKVTRYALQHAASIAGLMLTTDALVAEVPKEEGA 530          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_KLEPN (60 kDa chaperonin OS=Klebsiella pneumoniae GN=groL PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39
Identity = 91/200 (45.50%), Postives = 129/200 (64.50%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 599
            VAQIR  IE A  DY+REKL ER+AK++GGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R+++K+  +  T  N+++ VG  +  RA+  PL+ I  NAG   SVV+  V + D + YGYNAAT  Y +++  GI+DPTKV R  L++A+SVA   + ++C+V ++ K   P + A   M   G
Sbjct:  345 VAQIRKQIEEATSDYDREKLQERVAKVAGGVAVIKVGAATEVEMKEKKARVDDALHATRAAVEEGVVAGGGVALVRVAAKLAGL--TGQNEDQNVGIKVALRAMEAPLRQIVSNAGEEPSVVANNVKAGDGN-YGYNAATEEYGNMIDFGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKSDAPDLGAAGGMGGMG 541          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_KLEPL (60 kDa chaperonin (Fragment) OS=Klebsiella planticola GN=groL PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39
Identity = 92/196 (46.94%), Postives = 126/196 (64.29%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPM 587
            V QIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  +K    N+++ VG  +  RA+  PL+ I  N G   SVV+  V S D + YGYNAAT  Y +++  GI+DPTKV R  L++A+SVA   + ++C+V ++ K   P + A   M
Sbjct:  346 VTQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIAELKG--QNEDQNVGIKVALRAMESPLRQIVLNCGEEPSVVANTVKSGDGN-YGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKGDAPDLGAAGGM 538          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_ESCF3 (60 kDa chaperonin OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=groL PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39
Identity = 89/188 (47.34%), Postives = 125/188 (66.49%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA 566
            VAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  ++    N+E+ VG  +  RA+  PL+ I  N G   SVV+  V + D + YGYNAAT  Y +++  GI+DPTKV R  L++A+SVA   + ++C+V ++ + + A
Sbjct:  346 VAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRG--QNEEQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKAGDGN-YGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAA 530          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_CLOBL (60 kDa chaperonin OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=groL PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39
Identity = 92/198 (46.46%), Postives = 129/198 (65.15%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE--PAMPAGNPMD 590
            V+QIR  IE+   ++++EKL ER+AKL+GGVAVI+VGA TETELKE+KLR+EDAL ATKAA             + +  K+  +  T D  + K+G DI+++AL  P++ IA NAG  GSV+ EKV +++    GY+A    Y D++  GI+DPTKV R  L++A+S+A TFL ++  V +I E E  P M  G  MD
Sbjct:  344 VSQIRVQIEDTTSEFDKEKLQERLAKLAGGVAVIRVGAATETELKEEKLRIEDALAATKAAVEEGIVPGGGTAYIDIIPKIADL--TSDIIDVKLGIDIIRKALEEPVRQIANNAGAEGSVIIEKVKATE-AGVGYDALNDKYVDMLKTGIVDPTKVTRSALQNAASIASTFLTTEAAVADIPEKENTPPMAPGMGMD 538          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_CLOBK (60 kDa chaperonin OS=Clostridium botulinum (strain Okra / Type B1) GN=groL PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39
Identity = 92/198 (46.46%), Postives = 129/198 (65.15%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE--PAMPAGNPMD 590
            V+QIR  IE+   ++++EKL ER+AKL+GGVAVI+VGA TETELKE+KLR+EDAL ATKAA             + +  K+  +  T D  + K+G DI+++AL  P++ IA NAG  GSV+ EKV +++    GY+A    Y D++  GI+DPTKV R  L++A+S+A TFL ++  V +I E E  P M  G  MD
Sbjct:  344 VSQIRVQIEDTTSEFDKEKLQERLAKLAGGVAVIRVGAATETELKEEKLRIEDALAATKAAVEEGIVPGGGTAYIDIIPKIADL--TSDIIDVKLGIDIIRKALEEPVRQIANNAGAEGSVIIEKVKATE-AGVGYDALNDKYVDMLKTGIVDPTKVTRSALQNAASIASTFLTTEAAVADIPEKENTPPMAPGMGMD 538          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_CLOBJ (60 kDa chaperonin OS=Clostridium botulinum (strain Kyoto / Type A2) GN=groL PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39
Identity = 92/198 (46.46%), Postives = 129/198 (65.15%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE--PAMPAGNPMD 590
            V+QIR  IE+   ++++EKL ER+AKL+GGVAVI+VGA TETELKE+KLR+EDAL ATKAA             + +  K+  +  T D  + K+G DI+++AL  P++ IA NAG  GSV+ EKV +++    GY+A    Y D++  GI+DPTKV R  L++A+S+A TFL ++  V +I E E  P M  G  MD
Sbjct:  344 VSQIRVQIEDTTSEFDKEKLQERLAKLAGGVAVIRVGAATETELKEEKLRIEDALAATKAAVEEGIVPGGGTAYIDIIPKIADL--TSDIIDVKLGIDIIRKALEEPVRQIANNAGAEGSVIIEKVKATE-AGVGYDALNDKYVDMLKTGIVDPTKVTRSALQNAASIASTFLTTEAAVADIPEKENTPPMAPGMGMD 538          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_CLOBH (60 kDa chaperonin OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=groL PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39
Identity = 92/198 (46.46%), Postives = 129/198 (65.15%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE--PAMPAGNPMD 590
            V+QIR  IE+   ++++EKL ER+AKL+GGVAVI+VGA TETELKE+KLR+EDAL ATKAA             + +  K+  +  T D  + K+G DI+++AL  P++ IA NAG  GSV+ EKV +++    GY+A    Y D++  GI+DPTKV R  L++A+S+A TFL ++  V +I E E  P M  G  MD
Sbjct:  344 VSQIRVQIEDTTSEFDKEKLQERLAKLAGGVAVIRVGAATETELKEEKLRIEDALAATKAAVEEGIVPGGGTAYIDIIPKIADL--TSDIIDVKLGIDIIRKALEEPVRQIANNAGAEGSVIIEKVKATE-AGVGYDALNDKYVDMLKTGIVDPTKVTRSALQNAASIASTFLTTEAAVADIPEKENTPPMAPGMGMD 538          
The following BLAST results are available for this feature:
BLAST of FC923635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_SHESH3.318e-3945.2760 kDa chaperonin OS=Shewanella sediminis (strain ... [more]
CH60_SHEHH3.318e-3945.2360 kDa chaperonin OS=Shewanella halifaxensis (stra... [more]
CH60_NITMU3.318e-3948.9460 kDa chaperonin OS=Nitrosospira multiformis (str... [more]
CH60_KLEPN3.318e-3945.5060 kDa chaperonin OS=Klebsiella pneumoniae GN=groL... [more]
CH60_KLEPL3.318e-3946.9460 kDa chaperonin (Fragment) OS=Klebsiella plantic... [more]
CH60_ESCF33.318e-3947.3460 kDa chaperonin OS=Escherichia fergusonii (strai... [more]
CH60_CLOBL3.318e-3946.4660 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CLOBK3.318e-3946.4660 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CLOBJ3.318e-3946.4660 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CLOBH3.318e-3946.4660 kDa chaperonin OS=Clostridium botulinum (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31707C11EF StrClemenN Citrus clementina cDNA clone C31707C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923635 ID=FC923635; Name=FC923635; organism=Citrus clementina; type=EST; length=706bp
GAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAA
AGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCCGT
CATACAGGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGA
GAGTCGAAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATC
GTAGTTGGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGGATGC
CATTAAGGAAACCCTTGATAATGATGAAGAAAAGGTTGGAGCAGATATTG
TTAAAAGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGT
GTTAATGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAA
ATATGGATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAG
GAATTATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCC
TCGGTGGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAA
GGAGCCTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGAT
ATGGATACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTT
CTGACTTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCT
TCTTTC
back to top