FC923635

Overview
NameFC923635
Unique NameFC923635
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1340..2045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 9.968e-44
Identity = 96/191 (50.26%), Postives = 132/191 (69.11%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 575
            VAQ++  +   +  Y+ EKL ERIAKLSGGVAVI+VGA TETEL+++KLR+EDA NAT AA            L+ LS  V AIKE L++ +E++GADIV++AL  P  LIA+NAG+ G VV EK+ + +  + GYNA T  YE+L+ +G+IDP KV RC L++A+SVA   L +  +VVE  +P+ A+ A
Sbjct:  391 VAQLKKELSETDSIYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSGYVPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGE-WEVGYNAMTDTYENLVESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAAVAA 580          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH604_RHIEC (60 kDa chaperonin 4 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL4 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.968e-44
Identity = 98/198 (49.49%), Postives = 129/198 (65.15%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 590
            +AQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KEKK RV+DAL+AT+AA            LLR    +D IK    ND+++VG +IV+RAL  P + IA+NAG  GSVV  K+    +  YG+NA TG + DL A G+IDP KVVR  L+ ASS+A   + ++ ++ E   K+  PAMPAG  MD
Sbjct:  346 IAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALHATRAAVEEGILPGGGVALLRAVKALDNIKTA--NDDQRVGVEIVRRALEAPARQIAENAGAEGSVVVGKLREKSDFSYGWNAQTGEFGDLYAQGVIDPAKVVRTALQDASSIAGLLVTTEAMIAEKPKKDAPPAMPAGAGMD 541          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_THELT (60 kDa chaperonin OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=groL PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.302e-43
Identity = 98/194 (50.52%), Postives = 132/194 (68.04%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVV----EIKEPEPAMP 572
            +AQI++ IE    +YE+E L ER+AKL+GGVAVI+VGA TETELKEKK R+EDAL+AT+AA           TL+R    V+ + + LD D EKVGA IV +AL  P++ IA+NAG +G+V+ EK+L+S    YG++A  G Y D+  AGIIDP KV R  L++A+S+A   L ++ +VV    E KE  PAMP
Sbjct:  344 IAQIKSQIEQTTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLIRSRKAVEDVLKELDGD-EKVGAMIVYKALEAPIRQIAENAGYDGAVIIEKILASKEESYGFDALKGEYTDMFKAGIIDPAKVTRSALQNAASIAGMLLTTEVLVVEKPEEKKEAAPAMP 536          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_HYPNA (60 kDa chaperonin OS=Hyphomonas neptunium (strain ATCC 15444) GN=groL PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.302e-43
Identity = 95/201 (47.26%), Postives = 130/201 (64.68%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 605
            V+QIR  I++   DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DALNAT+AA            LLR S  +D +     ND+EK G DIV++AL  P++ IA+NAGV GSVV   +L++ +  YG+NA T  Y DL+A G+IDP KVVR  L++A+S+A   + ++  + E  + E A   G P    G G
Sbjct:  346 VSQIRKQIDDTSSDYDREKLQERLAKLAGGVAVIKVGGATEVEVKERKDRVDDALNATRAAVEEGIVPGGGVALLRSSKNIDVVGL---NDDEKAGIDIVRKALEAPIRQIAENAGVEGSVVVNTILNNKSRSYGFNAQTEEYGDLVAMGVIDPVKVVRSALQNAASIASLLITTEAGIAEAPKKESAGGGGMPGGMGGMG 543          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH602_CHRVO (60 kDa chaperonin 2 OS=Chromobacterium violaceum GN=groL2 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.302e-43
Identity = 101/201 (50.25%), Postives = 131/201 (65.17%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 605
            V +IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            LLR  + ++ +K   DN E++ G  IV RA+  PL+ I KNAG   SVV  KVL    + +GYNAA+G Y D++  G++DP KV R  L+HA+SVA   L +DC++ E+ E +PA  AG P D  G G
Sbjct:  346 VGEIRKQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALLRARATLENLK--TDNAEQEAGVKIVLRAIEAPLRQIVKNAGDEPSVVVNKVLEGKGN-FGYNAASGEYGDMLEMGVLDPAKVTRSALQHAASVAGLMLTTDCMIAELPEDKPA--AGMP-DMGGMG 540          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH601_ANASP (60 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 7120) GN=groL1 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.302e-43
Identity = 96/202 (47.52%), Postives = 130/202 (64.36%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 608
            V QIR  +E  E  Y++EKL ER+AKLSGGVAV++VGA TETE+K+KKLR+EDA+NATKAA           TL  L+ +++    +   DEE  GA IV RAL  PLK IA+NAG NG+V++E+V        G+NAAT  + D+  AGI+DP KV R  L++A+S+A   L ++C+VV+  EP+   PAG       + Y
Sbjct:  344 VEQIRRQMEETESSYDKEKLQERLAKLSGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLTPELEVWANSNLKDEELTGALIVARALPAPLKRIAENAGQNGAVIAERV-KEKAFNVGFNAATNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEPKDNAPAGAGAGGGDFDY 544          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_CAMFF (60 kDa chaperonin OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=groL PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.700e-43
Identity = 101/199 (50.75%), Postives = 131/199 (65.83%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 599
            + QI+  I     DY++EKL ER+AKLSGGVAVI+VGA TETE+KEKK RV+DALNATKAA            L++  ++V+    +L  DE  +GA+IVKRAL  PL+ IA+NAG +  VV+  V  +D   YG+NAA+G Y D+  AGIIDP KV R  L++A SVA   L ++  V EIKE +PAMP   PM + G
Sbjct:  345 INQIKAQIAETTSDYDKEKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALNATKAAVEEGIVVGGGAALIKAGNRVNL---SLKGDE-LIGAEIVKRALFAPLRQIAENAGFDAGVVANSVSCADCPNYGFNAASGEYVDMFEAGIIDPVKVERIALQNAVSVASLLLTTEATVSEIKEDKPAMP---PMPDMG 536          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_ACICJ (60 kDa chaperonin OS=Acidiphilium cryptum (strain JF-5) GN=groL PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.700e-43
Identity = 92/199 (46.23%), Postives = 135/199 (67.84%), Query Frame = 3
Query:    9 QIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 605
            QIR  IE    DY+REKL ER+AKL+GGVAVI+VG  +ETE+KE+K RV+DAL+AT+AA            L R S  ++ +K   DND+++ G DI+++A+  P++ IA+NAG +G+V+S KVL +D++ +G++A +G ++D++ AGIIDPTKVVR  L+ A+SVA   + ++ +V E   PE   PAG      G G
Sbjct:  348 QIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGASETEVKERKDRVDDALHATRAAVEEGIVPGGGVALARASLAINKLKA--DNDDQRFGIDIIRKAVLAPMRQIAENAGEDGAVISGKVLDNDDYSFGFDAQSGEFKDMVKAGIIDPTKVVRTALQDAASVAGLLITTEAMVAE--RPEKKAPAGGDAGMGGMG 542          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH601_SYNPX (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH8102) GN=groL1 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.700e-43
Identity = 94/200 (47.00%), Postives = 133/200 (66.50%), Query Frame = 3
Query:    9 QIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 608
            QI+  ++  +  Y++EKL ER+AKL+GGVAV++VGA TETE+K+KKLR+EDA+NATKAA           TL  L+  ++       + EE +GA+IV  AL  PL  IA+NAG NG+VV+E V S    + GYNAATG+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG  M    + Y
Sbjct:  346 QIKKQMDETDSTYDKEKLQERLAKLAGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPSLEEWANGNLSGEELIGANIVAAALTAPLMRIAENAGANGAVVAENVKSRAISE-GYNAATGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAAPAGGGMGGGDFDY 544          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH601_RHIEC (60 kDa chaperonin 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL1 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.700e-43
Identity = 96/193 (49.74%), Postives = 126/193 (65.28%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 578
            VAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KEKK R++DALNAT+AA            LLR S K+ A      ND+++ G +IV+RAL  P + IA+NAG   S+V  K+L  D   YGYNA TG Y D++  GIIDP KVVR  L+ A+SVA   + ++ ++ E+ K+  PAMP G
Sbjct:  346 VAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKISAKGV---NDDQEAGINIVRRALQAPARQIAENAGDEASIVVGKILDKDQDNYGYNAQTGEYGDMIGMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
The following BLAST results are available for this feature:
BLAST of FC923635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBA_PEA9.968e-4450.26RuBisCO large subunit-binding protein subunit alph... [more]
CH604_RHIEC9.968e-4449.4960 kDa chaperonin 4 OS=Rhizobium etli (strain CFN ... [more]
CH60_THELT1.302e-4350.5260 kDa chaperonin OS=Thermotoga lettingae (strain ... [more]
CH60_HYPNA1.302e-4347.2660 kDa chaperonin OS=Hyphomonas neptunium (strain ... [more]
CH602_CHRVO1.302e-4350.2560 kDa chaperonin 2 OS=Chromobacterium violaceum G... [more]
CH601_ANASP1.302e-4347.5260 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 71... [more]
CH60_CAMFF1.700e-4350.7560 kDa chaperonin OS=Campylobacter fetus subsp. fe... [more]
CH60_ACICJ1.700e-4346.2360 kDa chaperonin OS=Acidiphilium cryptum (strain ... [more]
CH601_SYNPX1.700e-4347.0060 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]
CH601_RHIEC1.700e-4349.7460 kDa chaperonin 1 OS=Rhizobium etli (strain CFN ... [more]

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Properties
Property NameValue
Genbank descriptionC31707C11EF StrClemenN Citrus clementina cDNA clone C31707C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923635 ID=FC923635; Name=FC923635; organism=Citrus clementina; type=EST; length=706bp
GAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAA
AGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCCGT
CATACAGGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGA
GAGTCGAAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATC
GTAGTTGGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGGATGC
CATTAAGGAAACCCTTGATAATGATGAAGAAAAGGTTGGAGCAGATATTG
TTAAAAGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGT
GTTAATGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAA
ATATGGATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAG
GAATTATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCC
TCGGTGGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAA
GGAGCCTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGAT
ATGGATACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTT
CTGACTTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCT
TCTTTC
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