FC923635

Overview
NameFC923635
Unique NameFC923635
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1340..2045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH601_ERYLH (60 kDa chaperonin 1 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL1 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.700e-43
Identity = 96/193 (49.74%), Postives = 132/193 (68.39%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPA-MPA 575
            V+QIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DAL+AT+AA            LLR    +D +K    ND+++ G DIV+RAL  P + IA+NAG +G+ +  K+L  D++ +G+NAATG YEDL+ +G+IDP KVVR  L+ A+SVA   + ++ +V E+ KE  PA MPA
Sbjct:  346 VSQIRAQIETTTSDYDREKLQERVAKLAGGVAVIRVGGATEVEVKERKDRVDDALHATRAAVEEGILPGGGIALLRALKSLDGLKAA--NDDQQSGIDIVRRALRAPARQIAENAGEDGAYIVGKLLEGDDYNHGFNAATGEYEDLVKSGVIDPAKVVRTALQDAASVASLLITTEALVAELPKEDTPAPMPA 536          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH602_PROM1 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL1A) GN=groL2 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.221e-43
Identity = 93/193 (48.19%), Postives = 132/193 (68.39%), Query Frame = 3
Query:    9 QIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 587
            QI+  ++  +  Y++EKL ER+AKLSGGVAV++VGA TETE+K+KKLR+EDA+NATKAA           TL  L+  ++    T  + EE +GA+IV+ AL  PL  IA+NAG NG+VV+E V S   +  GYNAATG Y D+++AGI+DP KV R  L++A+S+A   L ++C+V ++ E + + PAG  M
Sbjct:  346 QIKKQMDETDSTYDKEKLQERLAKLSGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALEDWSSTNLSGEELIGANIVEAALTSPLMRIAENAGANGAVVAENVKSKPVND-GYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDSSPAGGGM 537          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH602_GLUDA (60 kDa chaperonin 2 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.221e-43
Identity = 92/190 (48.42%), Postives = 130/190 (68.42%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 572
            V QIR  IE    DY+REKL ER+AKL+GGVA+I+VG  TE E+KE+K RV+DALNAT+AA            L R +  V  ++    ND++++G DIV++AL  PL+ IA+NAG +G+VV+ KVL +  + +G++A  G ++DL+AAGIIDPTKVVR  L+ A+SV    + ++ +V E  EP+PA P
Sbjct:  346 VGQIRAQIEETTSDYDREKLQERLAKLAGGVAIIRVGGSTEIEVKERKDRVDDALNATRAAVEEGIVPGGGTALARAAEVVARLQ--FHNDDQRIGGDIVRKALQAPLRQIAENAGEDGAVVAGKVLENGAYNFGFDAQIGEFKDLVAAGIIDPTKVVRTALQDAASVGSLLITTEVLVTEKAEPKPAAP 533          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.900e-43
Identity = 93/187 (49.73%), Postives = 130/187 (69.52%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP 563
            VAQ++  +   +  Y+ EKL ERIAKLSGGVAVI+VGA TETEL++++LR+EDA NAT AA             + LS+ V AIKET+++ +E++GADI+++AL  P  LIA NAGV G VV EK+  S+  + GYNA T  YE+L+ +G+IDP KV RC L++A+SV+   L +  +VVE  +P+P
Sbjct:  346 VAQLKKELSETDSIYDSEKLAERIAKLSGGVAVIKVGATTETELEDRQLRIEDAKNATFAAIEEGIVPGGGAAYVHLSTYVPAIKETIEDHDERLGADIIQKALQAPASLIANNAGVEGEVVIEKIKESE-WEMGYNAMTDKYENLIESGVIDPAKVTRCALQNAASVSGMVLTTQAIVVEKPKPKP 531          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_THEM4 (60 kDa chaperonin OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=groL PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.900e-43
Identity = 98/195 (50.26%), Postives = 127/195 (65.13%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-----PAMP 572
            +AQI+  IE    +YE+E L ER+AKL+GGVAVI+VGA TETELKEKK R+EDAL+AT+AA           TLLR    V+ I E LD D EK+GA IV  AL  P+  IAKNAG +G+++  KVL  D+  YG++A  G Y D+   GIIDP KV R  L++A+S+A   L ++ +VVE  EP+     P MP
Sbjct:  344 IAQIKAQIEQTTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGITLLRARKPVEKIVEELDGD-EKIGAKIVYEALSAPINQIAKNAGYDGAIIIHKVLEQDDPAYGFDALKGEYCDMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLVVEKPEPKNNNPMPEMP 537          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_DESDG (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain G20) GN=groL PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.900e-43
Identity = 99/200 (49.50%), Postives = 126/200 (63.00%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE-IKEPEPAMPAGNPMDNSG 599
            V  IR  IE    DY+REKL ER+AK+ GGVAVI VGA TETE+KEKK RVEDALNAT+AA            L+R    +D +K    +D+E  G  I++RA+  PL+ IA NAG  GS++ EKV       +G+NAATG +EDL+AAG+IDP KV R  L++A+SVA   L ++C + E  KE  PA PA   M   G
Sbjct:  346 VKMIRAQIEETSSDYDREKLQERLAKIVGGVAVINVGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTALVRCCKVLDDVKPA--DDDEAAGVTIIRRAIEEPLRQIAANAGFEGSIICEKV-KEGKDAFGFNAATGEFEDLIAAGVIDPKKVSRIALQNAASVASLLLTTECAIAEKPKEDAPAAPAMGGMGGMG 542          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_AZOPC (60 kDa chaperonin OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=groL PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.900e-43
Identity = 96/199 (48.24%), Postives = 131/199 (65.83%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 599
            V+QI+T IE    DY+ EKL ER+AKL+GGVAV+ VGA +E E+KEKK RV+DAL+AT+AA             +R  S ++  K    N++E  G +IVKRA+  PL+ I +NAG  G+V++++V   +   +GYNA TG YEDL  AG+IDPTKV R  LE+A+S+A   L ++CV+ E+KE  PA PA  PM   G
Sbjct:  346 VSQIKTQIEKTTSDYDSEKLQERLAKLAGGVAVLYVGAPSEVEMKEKKDRVDDALSATRAAIEEGTVPGGGVAYVRAISILEGFKGI--NEDETTGIEIVKRAIEEPLRQIVENAGKEGAVIAQRV-KEEKDDFGYNARTGIYEDLYVAGVIDPTKVARVALENAASIAGMLLTTECVITEVKEENPA-PAMPPMGGGG 540          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_AQUAE (60 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.900e-43
Identity = 95/187 (50.80%), Postives = 129/187 (68.98%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHK---YGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE 554
            + QI+  I+    DY+REKL ER+AKLSGGVA+I+VGA TE ELKEKK RVEDA++ATKAA            L+R S  ++ +K   DN ++++G DI+K+A+  PLK IA NAG +GSVV EKV+     K   +G+NAATG Y D+  AGIIDPTKVVR  +E+A+SVA T L ++ ++ ++ E
Sbjct:  346 IEQIKRQIQETTSDYDREKLQERLAKLSGGVAIIRVGAATEAELKEKKYRVEDAVHATKAAVEEGIVPGGGVALVRASEALEDLKG--DNHDQQLGIDIIKKAVRTPLKQIAYNAGYDGSVVLEKVIELGKEKGVSWGFNAATGEYVDMYEAGIIDPTKVVRTAIENAASVAGTMLTAEALIADLPE 530          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH60_ALKMQ (60 kDa chaperonin OS=Alkaliphilus metalliredigens (strain QYMF) GN=groL PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.900e-43
Identity = 95/192 (49.48%), Postives = 128/192 (66.67%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 578
            V+QI+  IE    D+++EKL ER+AKLSGGVAVIQVGA TETELKE+KLR+EDALNAT+AA            L+ +   V+A+ E    D EK G  I++RAL  PL+ IA+NAG+ GSV+  KV+SSD    GY+     Y +++ AGI+DPTKV R  L++A+S++   L ++  VV+I   EP MP G
Sbjct:  344 VSQIKKQIEETTSDFDKEKLQERLAKLSGGVAVIQVGAATETELKERKLRIEDALNATRAAVEEGIVAGGGTALVNVIPAVEALLEGSQGD-EKTGIQIIRRALEEPLRQIAENAGLEGSVIVNKVMSSDK-GIGYDVLNNKYVNMIEAGIVDPTKVTRSALQNAASISAMLLTTESAVVDIASEEPGMPGG 533          
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH602_NITWN (60 kDa chaperonin 2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL2 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.900e-43
Identity = 92/195 (47.18%), Postives = 132/195 (67.69%), Query Frame = 3
Query:    3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI---KEPEPAMPAG 578
            VAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DA++AT+AA            LLR S ++  IK    ND++K G +IV++AL  P + IA NAG +GSV+  K+L  + + YG+++ TG+Y +L++ GIIDPTKVVR  +++A+SVA   + ++ +V E+     P PAMP G
Sbjct:  346 VAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKRIKT--QNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGDYGNLISKGIIDPTKVVRTAIQNAASVASLLITTEAMVAELPKKNSPAPAMPGG 538          
The following BLAST results are available for this feature:
BLAST of FC923635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_ERYLH1.700e-4349.7460 kDa chaperonin 1 OS=Erythrobacter litoralis (st... [more]
CH602_PROM12.221e-4348.1960 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_GLUDA2.221e-4348.4260 kDa chaperonin 2 OS=Gluconacetobacter diazotrop... [more]
RUBA_WHEAT2.900e-4349.73RuBisCO large subunit-binding protein subunit alph... [more]
CH60_THEM42.900e-4350.2660 kDa chaperonin OS=Thermosipho melanesiensis (st... [more]
CH60_DESDG2.900e-4349.5060 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH60_AZOPC2.900e-4348.2460 kDa chaperonin OS=Azobacteroides pseudotrichony... [more]
CH60_AQUAE2.900e-4350.8060 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3... [more]
CH60_ALKMQ2.900e-4349.4860 kDa chaperonin OS=Alkaliphilus metalliredigens ... [more]
CH602_NITWN2.900e-4347.1860 kDa chaperonin 2 OS=Nitrobacter winogradskyi (s... [more]

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Properties
Property NameValue
Genbank descriptionC31707C11EF StrClemenN Citrus clementina cDNA clone C31707C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923635 ID=FC923635; Name=FC923635; organism=Citrus clementina; type=EST; length=706bp
GAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAA
AGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCCGT
CATACAGGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGA
GAGTCGAAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATC
GTAGTTGGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGGATGC
CATTAAGGAAACCCTTGATAATGATGAAGAAAAGGTTGGAGCAGATATTG
TTAAAAGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGT
GTTAATGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAA
ATATGGATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAG
GAATTATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCC
TCGGTGGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAA
GGAGCCTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGAT
ATGGATACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTT
CTGACTTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCT
TCTTTC
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