FC923638

Overview
NameFC923638
Unique NameFC923638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14513 contig Ccv1_Contig14513:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 60/196 (30.61%), Postives = 96/196 (48.98%), Query Frame = 3
Query:  129 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEILLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQMEWSLWTRDIEEEIIP 686
            LG  GL VS LGLG      G    +++E    ++  A+  GI  FDTA+VY     E++LG   K     R  + I TK  +G     + G+  K   + ++    ASL+RL ++Y+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+  E  +P
Sbjct:   42 LGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLK----ASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLP 230          
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: KCAB1_RAT (Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 59/196 (30.10%), Postives = 95/196 (48.47%), Query Frame = 3
Query:  129 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEILLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQMEWSLWTRDIEEEIIP 686
            LG  GL VS LGLG      G    +S+E    ++  A+  G+  FDTA+VY     E++LG   K     R  + I TK  +G     + G+  K   + ++     SL+RL ++Y+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+  E  +P
Sbjct:   76 LGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLK----GSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLP 264          
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: KCAB1_MUSPU (Voltage-gated potassium channel subunit beta-1 OS=Mustela putorius GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 59/196 (30.10%), Postives = 95/196 (48.47%), Query Frame = 3
Query:  129 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEILLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQMEWSLWTRDIEEEIIP 686
            LG  GL VS LGLG      G    +S+E    ++  A+  G+  FDTA+VY     E++LG   K     R  + I TK  +G     + G+  K   + ++     SL+RL ++Y+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+  E  +P
Sbjct:   83 LGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLK----GSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLP 271          
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: KCAB1_MOUSE (Voltage-gated potassium channel subunit beta-1 OS=Mus musculus GN=Kcnab1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 59/196 (30.10%), Postives = 95/196 (48.47%), Query Frame = 3
Query:  129 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEILLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQMEWSLWTRDIEEEIIP 686
            LG  GL VS LGLG      G    +S+E    ++  A+  G+  FDTA+VY     E++LG   K     R  + I TK  +G     + G+  K   + ++     SL+RL ++Y+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+  E  +P
Sbjct:   76 LGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLK----GSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLP 264          
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: KCAB1_BOVIN (Voltage-gated potassium channel subunit beta-1 OS=Bos taurus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 59/196 (30.10%), Postives = 95/196 (48.47%), Query Frame = 3
Query:  129 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEILLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQMEWSLWTRDIEEEIIP 686
            LG  GL VS LGLG      G    +S+E    ++  A+  G+  FDTA+VY     E++LG   K     R  + I TK  +G     + G+  K   + ++     SL+RL ++Y+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+  E  +P
Sbjct:   76 LGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLK----GSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLP 264          
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: YGHZ_ECO57 (Uncharacterized protein yghZ OS=Escherichia coli O157:H7 GN=yghZ PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 59/195 (30.26%), Postives = 99/195 (50.77%), Query Frame = 3
Query:  132 GTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEI------LLGKAFKMLPREKVQIATKFGV---VGLRDNGVIVKGTPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPD-TIRRAHAVH----PITAVQMEWSLWTRDIEE 674
            G  GL +  L LG  + + G+ + +  +  I  ++ AF  GIT FD A+ YG            LL + F    R+++ I+TK G     G   +G    G+  Y+    + SLKR+ ++Y+D++Y HRVD + P+EET   +   V+ GK  Y+G+S  SP+ T +    +H    P+   Q  ++L  R +++
Sbjct:   19 GKSGLRLPALSLGLWH-NFGHVNALESQRAI--LRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAY-RDELIISTKAGYDMWPGPYGSG----GSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLHEWKIPLLIHQPSYNLLNRWVDK 205          
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: YGHZ_ECOLI (Uncharacterized protein yghZ OS=Escherichia coli (strain K12) GN=yghZ PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 53/167 (31.74%), Postives = 87/167 (52.10%), Query Frame = 3
Query:  132 GTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEI------LLGKAFKMLPREKVQIATKFGV---VGLRDNGVIVKGTPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRR 605
            G  GL +  L LG  + + G+ + +  +  I  ++ AF  GIT FD A+ YG            LL + F    R+++ I+TK G     G   +G    G+  Y+    + SLKR+ ++Y+D++Y HRVD + P+EET   +   V+ GK  Y+G+S  SP+  ++
Sbjct:   19 GKSGLRLPALSLGLWH-NFGHVNALESQRAI--LRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAY-RDELIISTKAGYDMWPGPYGSG----GSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQK 177          
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: YP088_YEAST (Putative aryl-alcohol dehydrogenase YPL088W OS=Saccharomyces cerevisiae GN=YPL088W PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 62/225 (27.56%), Postives = 102/225 (45.33%), Query Frame = 3
Query:  114 VPRVKLGTQGLEVSKLGLGCMNLSSGYSSPVSEEDG---ISMIKHAFSKGITFFDTADVYGQNANEILLGK--AFKMLPREKVQIATKF-----GVVGLRDNGVIVKG-----------TPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------ASPDTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRETRI 707
            V +V+LG  GL++S + +GCM+  S   +    ED      ++KH + KG+  FDTAD Y    +E ++ +   +  + RE V I TK        + L  N  + +            +  ++    E S+KRL   YIDL   HR+D   P++E +  +  +VE G ++YIG S       A        +      + Q  ++L  R+ E E+IP  +   I
Sbjct:    4 VKQVRLGNSGLKISPIVIGCMSYGSKKWADWVIEDKTQIFKIMKHCYDKGLRTFDTADFYSNGLSERIIKEFLEYYSIKRETVVIMTKIYFPVDETLDLHHNFTLNEFEELDLSNQRGLSRKHIIAGVENSVKRLGT-YIDLLQIHRLDHETPMKEIMKALNDVVEAGHVRYIGASSMLATEFAELQFTADKYGWFQFISSQSYYNLLYREDERELIPFAKRHNI 227          
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: AAD4_YEAST (Probable aryl-alcohol dehydrogenase AAD4 OS=Saccharomyces cerevisiae GN=AAD4 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 49/177 (27.68%), Postives = 84/177 (47.46%), Query Frame = 3
Query:  204 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEILLGKAFKMLP-REKVQIATKFG------VVGLRDNGVIVKGTPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA------HAVHPITAVQMEWSLWTRDIEEEIIPLCR 695
            +++E    ++   +  G    DTA+ Y    +EI +G+  K    R+++ IATKF        VG   +          + +    SL++L  D+ID+ Y H  D    IEE +  +  LV++GK+ Y+G+S+     +  A      H   P +  Q +W++  RD E +IIP+ R
Sbjct:    4 MNKEQAFELLDAFYEAGGNCIDTANSYQNEESEIWIGEWMKSRKLRDQIVIATKFTGDYKKYEVGGGKSANYCGNHKHSLHVSVRDSLRKLQTDWIDILYVHWWDYMSSIEEVMDSLHILVQQGKVLYLGVSDTPAWVVSAANYYATSHGKTPFSIYQGKWNVLNRDFERDIIPMAR 180          
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: ARK73_HUMAN (Aflatoxin B1 aldehyde reductase member 3 OS=Homo sapiens GN=AKR7A3 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 56/184 (30.43%), Postives = 84/184 (45.65%), Query Frame = 3
Query:  165 LGCMNLSSGYSSPVSEEDGISMIKHAF-SKGITFFDTADVYGQNANEILLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------ASPDTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCR 695
            LG M +     +P S     + +  AF  +G T  DTA VY +  +E +LG     L     ++      + L  N +     PD +R   E SLKRL    +DL+Y H  D S P+EET+    +L +EGK   +GLS       A   T+ +++     T  Q  ++  TR +E E+ P  R
Sbjct:   14 LGAMEMGRRMDAPTS-----AAVTRAFLERGHTEIDTAFVYSEGQSETILGGLGLRLGGSDCRVKIDTKAIPLFGNSL----KPDSLRFQLETSLKRLQCPRVDLFYLHMPDHSTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCKSNGWILPTVYQGMYNAITRQVETELFPCLR 188          
The following BLAST results are available for this feature:
BLAST of FC923638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
KCAB2_MOUSE4.865e-1430.61Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB1_RAT8.298e-1430.10Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MUSPU8.298e-1430.10Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MOUSE8.298e-1430.10Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_BOVIN8.298e-1430.10Voltage-gated potassium channel subunit beta-1 OS=... [more]
YGHZ_ECO571.084e-1330.26Uncharacterized protein yghZ OS=Escherichia coli O... [more]
YGHZ_ECOLI1.849e-1331.74Uncharacterized protein yghZ OS=Escherichia coli (... [more]
YP088_YEAST1.198e-1227.56Putative aryl-alcohol dehydrogenase YPL088W OS=Sac... [more]
AAD4_YEAST2.044e-1227.68Probable aryl-alcohol dehydrogenase AAD4 OS=Saccha... [more]
ARK73_HUMAN5.947e-1230.43Aflatoxin B1 aldehyde reductase member 3 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionC31707D02EF StrClemenN Citrus clementina cDNA clone C31707D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923638 ID=FC923638; Name=FC923638; organism=Citrus clementina; type=EST; length=709bp
GGCTCATTGTTGACGTTAGAGTCAACTGTCTCTCTACTTATTGAAACTTG
AAAGACACCCAAAACAAAGAAACCAAAACTACAGCTTCAAAAATGGCAGA
AGAGAAACTCCAAGTTCCAAGAGTGAAACTTGGTACCCAAGGCCTCGAGG
TTTCAAAGTTGGGGCTTGGATGCATGAACCTGAGTTCTGGTTATAGCTCT
CCAGTCTCAGAAGAGGATGGCATCTCAATGATAAAACATGCTTTCAGTAA
AGGAATCACTTTCTTTGATACTGCTGATGTGTACGGACAAAATGCTAATG
AAATTCTTCTGGGAAAGGCCTTCAAGATGTTGCCCAGAGAAAAGGTACAA
ATAGCCACAAAGTTTGGGGTTGTAGGACTAAGAGATAATGGCGTGATCGT
GAAGGGCACCCCTGATTACGTGCGCTTGTGTTGTGAAGCTAGCCTGAAGC
GACTTGATGTGGATTACATTGATCTATATTATCAACATAGAGTGGACACA
TCAGTCCCCATAGAGGAAACCATTGGTGAAATGAAGAAGCTGGTGGAAGA
GGGTAAAATCAAGTACATTGGATTATCTGAGGCCAGCCCAGACACAATTA
GGAGAGCACATGCTGTTCATCCCATCACAGCTGTACAAATGGAATGGTCC
CTCTGGACTCGTGATATTGAGGAAGAGATAATACCCCTCTGCAGGGAAAC
TCGCATTGG
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