FC923638

Overview
NameFC923638
Unique NameFC923638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14513 contig Ccv1_Contig14513:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: Y2320_MYCBO (Uncharacterized oxidoreductase Mb2320 OS=Mycobacterium bovis GN=Mb2320 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 55/193 (28.50%), Postives = 93/193 (48.19%), Query Frame = 3
Query:  147 EVSKLGLGCMNLSS---GYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEILLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCR-ETRI 707
            +VS++GLG     S   GY    +      ++K A + G+T FDTA++YG   +E +LG+A   L  ++ ++     V  +     ++K           AS +RL ++ I LY  H+ +  VP    +  M+ L++ G I   G+S  S    R+A A    P+ + Q+ +SL   D  E+++P    E RI
Sbjct:   11 QVSRIGLGTWQFGSREWGYGDRYATGAARDIVKRARALGVTLFDTAEIYGLGKSERILGEA---LGDDRTEVVVASKVFPVAPFPAVIKNRE-------RASARRLQLNRIPLYQIHQPNPVVPDSVIMPGMRDLLDSGDIGAAGVSNYSLARWRKADAALGRPVVSNQVHFSLAHPDALEDLVPFAELENRI 193          
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: Y2298_MYCTU (Uncharacterized oxidoreductase Rv2298/MT2355 OS=Mycobacterium tuberculosis GN=Rv2298 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 55/193 (28.50%), Postives = 93/193 (48.19%), Query Frame = 3
Query:  147 EVSKLGLGCMNLSS---GYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEILLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCR-ETRI 707
            +VS++GLG     S   GY    +      ++K A + G+T FDTA++YG   +E +LG+A   L  ++ ++     V  +     ++K           AS +RL ++ I LY  H+ +  VP    +  M+ L++ G I   G+S  S    R+A A    P+ + Q+ +SL   D  E+++P    E RI
Sbjct:   11 QVSRIGLGTWQFGSREWGYGDRYATGAARDIVKRARALGVTLFDTAEIYGLGKSERILGEA---LGDDRTEVVVASKVFPVAPFPAVIKNRE-------RASARRLQLNRIPLYQIHQPNPVVPDSVIMPGMRDLLDSGDIGAAGVSNYSLARWRKADAALGRPVVSNQVHFSLAHPDALEDLVPFAELENRI 193          
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: YDHF_ECOLI (Oxidoreductase ydhF OS=Escherichia coli (strain K12) GN=ydhF PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 50/164 (30.49%), Postives = 79/164 (48.17%), Query Frame = 3
Query:  114 VPRVKLGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEILLGKAFKMLP--REKVQIATKFGVVGL-RDNGVIVKGTPD--YVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP 590
            V R+ +  QG E S+  +G   L       +S    +S I+     G+T  D AD+YG    E   G+A K+ P  RE+++I +K G+    R+  VI     D  ++    E SL  L  D++DL   HR D  +  +E     K L + GK+++ G+S  +P
Sbjct:    2 VQRITIAPQGPEFSRFVMGYWRLMDWN---MSARQLVSFIEEHLDLGVTTVDHADIYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNFTP 162          
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: YEAE_ECOLI (Uncharacterized protein yeaE OS=Escherichia coli (strain K12) GN=yeaE PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 49/165 (29.70%), Postives = 83/165 (50.30%), Query Frame = 3
Query:  222 ISMIKHAFSKGITFFDTADVYGQNANEILLGKAFKMLPREKVQIATKFGVVGLRDNGVIVKGTPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---ASPDTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRETRI 707
            ++ ++     G+T  DTA++Y     E ++G+A   L REKV + +K           I           CEASL+RL+ DY+DLY  H    S   EET+  M+KL+ +GKI+  G+S    A    + +    +     Q+ + L +R IE +++P C++ ++
Sbjct:   35 VAALRAGIELGLTLIDTAEMYADGGAEKVVGEALTGL-REKVFLVSKVYPWNAGGQKAIN---------ACEASLRRLNTDYLDLYLLH-WSGSFAFEETVAAMEKLIAQGKIRRWGVSNLDYADMQELWQLPGGNQCATNQVLYHLGSRGIEYDLLPWCQQQQM 188          
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: KCAB3_RAT (Voltage-gated potassium channel subunit beta-3 OS=Rattus norvegicus GN=Kcnab3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 52/167 (31.14%), Postives = 80/167 (47.90%), Query Frame = 3
Query:  129 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEILLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV 617
            LG  GL VS LGLG       + S +S+E    ++  A+  G+  FDTA+VY     E  LG   K     R    I TK  +G     + G+  K    ++    + SL RL ++Y+D+ + +R D S P+EE +  M  ++ +G   Y G S  S   I  A+++
Sbjct:   83 LGKSGLRVSCLGLGTWVT---FGSQISDETAEDLLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRK----HIIEGLQGSLDRLQLEYVDIVFANRSDPSSPMEEIVRAMTYVINQGLALYWGTSRWSAAEIMEAYSM 242          
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: KCAB3_HUMAN (Voltage-gated potassium channel subunit beta-3 OS=Homo sapiens GN=KCNAB3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 58/196 (29.59%), Postives = 89/196 (45.41%), Query Frame = 3
Query:  129 LGTQGLEVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEILLGKAFKMLP--REKVQIATK--FGVVGLRDNGVIVKGTPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQMEWSLWTRDIEEEIIP 686
            LG  GL VS LGLG       + S +S+E    ++  A+  G+  FDTA+VY     E  LG   K     R    I TK  +G     + G+  K   + +R     SL+RL + Y+D+ + +R D + P+EE +  M  ++ +G   Y G S      I  A+++       P    Q E  L+ R+  E  +P
Sbjct:   83 LGKSGLRVSCLGLGTWVT---FGSQISDETAEDVLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLR----GSLERLQLGYVDIVFANRSDPNCPMEEIVRAMTYVINQGLALYWGTSRWGAAEIMEAYSMARQFNLIPPVCEQAEHHLFQREKVEMQLP 271          
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: ARK74_HUMAN (Aflatoxin B1 aldehyde reductase member 4 OS=Homo sapiens GN=AKR7L PE=2 SV=5)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 61/187 (32.62%), Postives = 88/187 (47.06%), Query Frame = 3
Query:  165 LGCMNLSSGYSSPVSEEDGISMIKHAF-SKGITFFDTADVYGQNANEILLGKAFKMLPRE--KVQIATKFGV-VGLRDNGVIVKGTPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------ASPDTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCR 695
            LG M +     +P S     + +  AF  +G T  DTA +Y    +E +LG     +     +V+IATK    +G   N +     PD VR   E SLKRL    +DL+Y H  D S P+EET+    +L +EGK   +GLS       A   T+ +++     T  Q  +S  TR +E E+ P  R
Sbjct:   14 LGAMEMGRRMDAPTS-----AAVTRAFLERGHTEIDTAFLYSDGQSETILGGLGLRMGSSDCRVKIATKANPWIG---NSL----KPDSVRSQLETSLKRLQCPUVDLFYLHAPDHSAPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCKSNGWILPTVYQGMYSATTRQVETELFPCLR 188          
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: ARK72_HUMAN (Aflatoxin B1 aldehyde reductase member 2 OS=Homo sapiens GN=AKR7A2 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 58/185 (31.35%), Postives = 87/185 (47.03%), Query Frame = 3
Query:  165 LGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEILLGKAFKMLPRE--KVQIATKFGVVGLRDNGVIVKGTPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------ASPDTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCR 695
            LG M +     +P S     + ++    +G T  DTA +Y    +E +LG     L     +V+IATK        +G  +K  PD VR   E SLKRL    +DL+Y H  D   P+EET+   ++L +EGK   +GLS       A   T+ +++     T  Q  ++  TR +E E+ P  R
Sbjct:   42 LGTMEMGRRMDAPASA----AAVRAFLERGHTELDTAFMYSDGQSETILGGLGLGLGGGDCRVKIATKANPW----DGKSLK--PDSVRSQLETSLKRLQCPQVDLFYLHAPDHGTPVEETLHACQRLHQEGKFVELGLSNYASWEVAEICTLCKSNGWILPTVYQGMYNATTRQVETELFPCLR 216          
BLAST of FC923638 vs. ExPASy Swiss-Prot
Match: YCSN_BACSU (Uncharacterized oxidoreductase ycsN OS=Bacillus subtilis GN=ycsN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 51/177 (28.81%), Postives = 79/177 (44.63%), Query Frame = 3
Query:  207 SEEDGISMIKHAFSKGITFFDTADVYGQNANEILLGKAFKMLP--REKVQIATKFGVVGLRDNGVIVKG-----TPDYVRLCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLWTRDIEEEI---IPLCRETRI 707
            S+ + +S+I+     GIT FD AD+YG    E L G A  + P  RE +++ TK G+V         +      +  ++    E SL  L  DYID+   HR D  +  E      + L   GK++Y G+S       R   +  P   V  +  L   ++E  +   + LC+E RI
Sbjct:   28 SDAELLSLIEWCIDHGITTFDHADIYGGYTCEKLFGNALALSPGLRENIELVTKCGIVLESPERPAHRSHHYNTSKSHILASVEQSLMNLRTDYIDMLLIHRPDPLMDPEGVAEAFQALKCSGKVRYFGVSNFKDHQYRMLESYLPEKLVTNQIELSAYELENMLDGTLNLCQEKRI 204          
The following BLAST results are available for this feature:
BLAST of FC923638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
Y2320_MYCBO7.767e-1228.50Uncharacterized oxidoreductase Mb2320 OS=Mycobacte... [more]
Y2298_MYCTU7.767e-1228.50Uncharacterized oxidoreductase Rv2298/MT2355 OS=My... [more]
YDHF_ECOLI1.014e-1130.49Oxidoreductase ydhF OS=Escherichia coli (strain K1... [more]
YEAE_ECOLI1.325e-1129.70Uncharacterized protein yeaE OS=Escherichia coli (... [more]
KCAB3_RAT1.325e-1131.14Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB3_HUMAN2.260e-1129.59Voltage-gated potassium channel subunit beta-3 OS=... [more]
ARK74_HUMAN2.260e-1132.62Aflatoxin B1 aldehyde reductase member 4 OS=Homo s... [more]
ARK72_HUMAN5.034e-1131.35Aflatoxin B1 aldehyde reductase member 2 OS=Homo s... [more]
YCSN_BACSU8.587e-1128.81Uncharacterized oxidoreductase ycsN OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionC31707D02EF StrClemenN Citrus clementina cDNA clone C31707D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923638 ID=FC923638; Name=FC923638; organism=Citrus clementina; type=EST; length=709bp
GGCTCATTGTTGACGTTAGAGTCAACTGTCTCTCTACTTATTGAAACTTG
AAAGACACCCAAAACAAAGAAACCAAAACTACAGCTTCAAAAATGGCAGA
AGAGAAACTCCAAGTTCCAAGAGTGAAACTTGGTACCCAAGGCCTCGAGG
TTTCAAAGTTGGGGCTTGGATGCATGAACCTGAGTTCTGGTTATAGCTCT
CCAGTCTCAGAAGAGGATGGCATCTCAATGATAAAACATGCTTTCAGTAA
AGGAATCACTTTCTTTGATACTGCTGATGTGTACGGACAAAATGCTAATG
AAATTCTTCTGGGAAAGGCCTTCAAGATGTTGCCCAGAGAAAAGGTACAA
ATAGCCACAAAGTTTGGGGTTGTAGGACTAAGAGATAATGGCGTGATCGT
GAAGGGCACCCCTGATTACGTGCGCTTGTGTTGTGAAGCTAGCCTGAAGC
GACTTGATGTGGATTACATTGATCTATATTATCAACATAGAGTGGACACA
TCAGTCCCCATAGAGGAAACCATTGGTGAAATGAAGAAGCTGGTGGAAGA
GGGTAAAATCAAGTACATTGGATTATCTGAGGCCAGCCCAGACACAATTA
GGAGAGCACATGCTGTTCATCCCATCACAGCTGTACAAATGGAATGGTCC
CTCTGGACTCGTGATATTGAGGAAGAGATAATACCCCTCTGCAGGGAAAC
TCGCATTGG
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