FC923642

Overview
NameFC923642
Unique NameFC923642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: CLK2_MOUSE (Dual specificity protein kinase CLK2 OS=Mus musculus GN=Clk2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.848e-19
Identity = 45/98 (45.92%), Postives = 69/98 (70.41%), Query Frame = 3
Query:  324 EDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRER-KEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGG-NRCVQIRNWFDYRNHICI 611
            EDD +GH ++ +G+ L  RY+I S +GEGT G+V++C D  R    VA+KI++ ++KY+EAA +EI VL+++ + D    N CVQ+ +WFDY  H+CI
Sbjct:  143 EDDAEGHLIYHVGDWLQERYEIVSTLGEGTSGRVVQCVDHRRGGTRVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCI 240          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: CLK4_HUMAN (Dual specificity protein kinase CLK4 OS=Homo sapiens GN=CLK4 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 54/128 (42.19%), Postives = 75/128 (58.59%), Query Frame = 3
Query:  237 APPRAPSDHVTSSSLFVKGVARNGSPPWREDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEM-VAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGG-NRCVQIRNWFDYRNHICIV 614
            +P R  + H +S     K   R  S    EDD++GH +   G+ L +RY+I   +GEG FG+V+EC D     M VA+KIV+ + +YREAA  EI+VL+ L   D     RCVQ+  WFD+  H+CIV
Sbjct:  112 SPKRKRNRHCSSHQSRSKSHRRKRSRSI-EDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGMHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIV 238          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: CLK4_MOUSE (Dual specificity protein kinase CLK4 OS=Mus musculus GN=Clk4 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  324 EDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEM-VAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGG-NRCVQIRNWFDYRNHICIV 614
            EDD++GH +   G+ L +RY+I   +GEG FG+V+EC D     + VA+KIV+ + +YREAA  EI+VL+ L   D     RCVQ+  WFD+  H+CIV
Sbjct:  140 EDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGLHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIV 238          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: CLK1_MOUSE (Dual specificity protein kinase CLK1 OS=Mus musculus GN=Clk1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.015e-18
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 3
Query:  324 EDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRE-RKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICIV 614
            EDD++GH +   G+ L++RY+I   +GEG FG+V+EC D +     VA+KIV+ + +Y EAA  EI+VL+ L   D     RCVQ+  WF++R HICIV
Sbjct:  141 EDDEEGHLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKVGGRRVAVKIVKNVDRYCEAAQSEIQVLEHLNTTDPHSTFRCVQMLEWFEHRGHICIV 239          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: CLK1_HUMAN (Dual specificity protein kinase CLK1 OS=Homo sapiens GN=CLK1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  324 EDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRER-KEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICIV 614
            EDD++GH +   G+ L++RY+I   +GEG FG+V+EC D +     VA+KIV+ + +Y EAA  EI+VL+ L   D     RCVQ+  WF++  HICIV
Sbjct:  142 EDDEEGHLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIV 240          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: CLKA_DICDI (Probable serine/threonine-protein kinase clkA OS=Dictyostelium discoideum GN=clkA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17
Identity = 42/100 (42.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:  327 DDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAK----HDKGGNRCVQIRNWFDYRNHICIV 614
            DD++ +Y   +GE L +RYK+   +G GTF  V+ECWD      VAIKIVR  KKY E A++EI++L+ L K    + K  + C+++ + F +++HIC+V
Sbjct:  572 DDENDYYKVQVGEYLNNRYKVLCTVGSGTFSTVVECWDTNSSGQVAIKIVRSAKKYTEDALVEIDILRNLEKTGNSNGKYLSHCIRLLDSFLFKDHICLV 671          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: KNS1_YEAST (Dual specificity protein kinase KNS1 OS=Saccharomyces cerevisiae GN=KNS1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 41/100 (41.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:  330 DKDGHYMFALGENLTS--RYKIHSKMGEGTFGQVLECWDRERK-EMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICIVS 617
            DKDGHY++   +   S  R+ +   +G+GTFG+VL+C D + +   VA+K++R + +YREAA  E+ +LQ +  +D  G  +C+ +R  FDY+NHIC+V+
Sbjct:  294 DKDGHYVYQENDIFGSGGRFVVKDLLGQGTFGKVLKCIDNKYEPNYVAVKVIRAVDRYREAAKTELRILQTILNNDPQGQFQCLLLRECFDYKNHICLVT 393          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: DYRK4_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 4 OS=Mus musculus GN=Dyrk4 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 37/96 (38.54%), Postives = 66/96 (68.75%), Query Frame = 3
Query:  327 DDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICI 611
            DD+ G YM  L +++  RY++   +G+G+FGQV +C D +  E+VA+KI+R  K++   A++E+++L+ L + DK  N   V ++++F +RNH+CI
Sbjct:  201 DDEHGSYMKVLHDHIAYRYEVLEMIGKGSFGQVAKCLDHKNNELVALKIIRNKKRFHHQALVELKILEALRRKDKDNNHNVVHMKDFFYFRNHLCI 296          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: DYRK4_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 4 OS=Homo sapiens GN=DYRK4 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 36/96 (37.50%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  327 DDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICI 611
            DD+ G Y+  L +++  RY++   +G+G+FGQV +C D +  E+VA+KI+R  K++ + A++E+++L+ L K DK      V ++++F +RNH CI
Sbjct:   86 DDEHGFYLKVLHDHIAYRYEVLETIGKGSFGQVAKCLDHKNNELVALKIIRNKKRFHQQALMELKILEALRKKDKDNTYNVVHMKDFFYFRNHFCI 181          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: PPK5_SCHPO (Serine/threonine-protein kinase ppk5 OS=Schizosaccharomyces pombe GN=ppk5 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 36/98 (36.73%), Postives = 65/98 (66.33%), Query Frame = 3
Query:  327 DDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGG-NRCVQIRNWFDYRNHICIVS 617
            DD +G Y    G++L  RY+I   +G+G+FGQVL+C D +R ++VAIK+++  +K+    ++E+ +L++L + D    N  ++  + FD+R H+CIV+
Sbjct:  500 DDDNGDYKAIQGDHLLYRYEIIDTVGKGSFGQVLKCIDHKRGQVVAIKVIKNRQKFHGQTLVEVGILKRLCEADPADKNNVIRYLSHFDFRGHLCIVT 597          
The following BLAST results are available for this feature:
BLAST of FC923642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
CLK2_MOUSE2.848e-1945.92Dual specificity protein kinase CLK2 OS=Mus muscul... [more]
CLK4_HUMAN1.082e-1842.19Dual specificity protein kinase CLK4 OS=Homo sapie... [more]
CLK4_MOUSE4.112e-1846.46Dual specificity protein kinase CLK4 OS=Mus muscul... [more]
CLK1_MOUSE7.015e-1846.46Dual specificity protein kinase CLK1 OS=Mus muscul... [more]
CLK1_HUMAN2.041e-1745.45Dual specificity protein kinase CLK1 OS=Homo sapie... [more]
CLKA_DICDI3.481e-1742.00Probable serine/threonine-protein kinase clkA OS=D... [more]
KNS1_YEAST1.013e-1641.00Dual specificity protein kinase KNS1 OS=Saccharomy... [more]
DYRK4_MOUSE1.013e-1638.54Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK4_HUMAN8.575e-1637.50Dual specificity tyrosine-phosphorylation-regulate... [more]
PPK5_SCHPO9.481e-1536.73Serine/threonine-protein kinase ppk5 OS=Schizosacc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31707D06EF StrClemenN Citrus clementina cDNA clone C31707D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923642 ID=FC923642; Name=FC923642; organism=Citrus clementina; type=EST; length=695bp
ATTCTTATCTTCGTTATTTTATTCGTTCGTTTCAATCGCATCAAGATCTC
GATCTCTCTCTTATTTCCTCGCCGTGAGCTGCGATCATGGAGATGGAGCG
CGTGACGGAGTTTCCTTTTTCGAATCTGGATCGGCGTCCTCGTAAGCGAG
CGCGTTTGGGCTGGGACGTGCCTCAGGTACCGAAGGCTCAGGTAGGATTA
TTTTGTGGACAAGAGGTTGGGAATGTAACAAGCTTTGCACCTCCAAGAGC
TCCCTCAGACCATGTCACTAGTTCTTCTCTATTTGTAAAGGGAGTGGCTC
GAAATGGTTCTCCCCCATGGCGTGAGGATGACAAAGATGGCCATTATATG
TTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATTCACAGCAAAAT
GGGTGAAGGAACCTTCGGTCAGGTTTTGGAATGCTGGGATCGTGAGAGGA
AAGAAATGGTAGCCATTAAAATTGTTCGTGGGATCAAGAAATATCGTGAG
GCTGCTATGATAGAAATTGAAGTACTTCAACAACTTGCAAAACATGATAA
AGGTGGCAACCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACC
ATATCTGTATTGTAAGTATATGATTGTTTTGTGATGAATTAATTTCCCCA
ATTTACACATAATTTGGGGGTTTAGACTTCTGGATGGATTCAATG
back to top