FC923642

Overview
NameFC923642
Unique NameFC923642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: POM1_SCHPO (Dual specificity protein kinase pom1 OS=Schizosaccharomyces pombe GN=pom1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.617e-14
Identity = 38/106 (35.85%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  303 NGSPPWREDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRC-VQIRNWFDYRNHICIVS 617
            N S  +  DD+ G Y   LG+++  RY++   +G+G+FGQVL C D E  ++VA+KI+R  K++   A++E ++LQ++ + D     C VQ  + F +R+H+C+ +
Sbjct:  673 NTSSNFGFDDERGDYKVVLGDHIAYRYEVVDFLGKGSFGQVLRCIDYETGKLVALKIIRNKKRFHMQALVETKILQKIREWDPLDEYCMVQYTDHFYFRDHLCVAT 778          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: PRP4B_DICDI (Serine/threonine-protein kinase prpf4B OS=Dictyostelium discoideum GN=prpf4B PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  303 NGSPPWREDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNR---CVQIRNWFDYRNHICIV 614
            N S  W  DD DG+Y F +GE +  +Y+I S +G G F  V+   + +  E V IKI+R       + + EIE+LQ+++      N+   C+Q+++ F+YRNH+CIV
Sbjct:  467 NLSDNW--DDADGYYKFRVGE-IMDKYQIFSPIGSGVFSTVVSAKETKTNEDVVIKIIRNRPSMHRSGLKEIEILQKISNTPTSSNQKSHCIQMKDHFNYRNHLCIV 570          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: DYR1A_XENTR (Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Xenopus tropicalis GN=dyrk1a PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  327 DDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHD-KGGNRCVQIRNWFDYRNHICIV 614
            DD +  Y+   GE    RY+I S +G+G+FGQV++ +DR  +E VAIKI++  K +   A IE+ +L+ + KHD +     V ++  F +RNH+C+V
Sbjct:  133 DDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRAEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLV 229          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: DYR1A_XENLA (Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Xenopus laevis GN=dyrk1a PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  327 DDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHD-KGGNRCVQIRNWFDYRNHICIV 614
            DD +  Y+   GE    RY+I S +G+G+FGQV++ +DR  +E VAIKI++  K +   A IE+ +L+ + KHD +     V ++  F +RNH+C+V
Sbjct:  133 DDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLV 229          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: DYR1A_RAT (Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Rattus norvegicus GN=Dyrk1a PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  327 DDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHD-KGGNRCVQIRNWFDYRNHICIV 614
            DD +  Y+   GE    RY+I S +G+G+FGQV++ +DR  +E VAIKI++  K +   A IE+ +L+ + KHD +     V ++  F +RNH+C+V
Sbjct:  141 DDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLV 237          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: DYR1A_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Mus musculus GN=Dyrk1a PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  327 DDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHD-KGGNRCVQIRNWFDYRNHICIV 614
            DD +  Y+   GE    RY+I S +G+G+FGQV++ +DR  +E VAIKI++  K +   A IE+ +L+ + KHD +     V ++  F +RNH+C+V
Sbjct:  141 DDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLV 237          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: DYR1A_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Homo sapiens GN=DYRK1A PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  327 DDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHD-KGGNRCVQIRNWFDYRNHICIV 614
            DD +  Y+   GE    RY+I S +G+G+FGQV++ +DR  +E VAIKI++  K +   A IE+ +L+ + KHD +     V ++  F +RNH+C+V
Sbjct:  141 DDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLV 237          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: MBK2_CAEEL (Dual specificity tyrosine-phosphorylation-regulated kinase mbk-2 OS=Caenorhabditis elegans GN=mbk-2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 37/110 (33.64%), Postives = 67/110 (60.91%), Query Frame = 3
Query:  285 VKGVARNGSPPWREDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGG-NRCVQIRNWFDYRNHICI 611
            V G A NG      DD++G Y   + +++  RY++   +G+G+FGQV++ +D + ++ VA+K+VR  K++   A  EI +L  L + D  G +  + + ++F++RNH CI
Sbjct:  433 VIGGANNGG----YDDENGSYQLVVHDHIAYRYEVLKVIGKGSFGQVIKAFDHKYQQYVALKLVRNEKRFHRQADEEIRILDHLRRQDSDGTHNIIHMLDYFNFRNHKCI 538          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: MBK2_CAEBR (Dual specificity tyrosine-phosphorylation-regulated kinase mbk-2 OS=Caenorhabditis briggsae GN=mbk-2 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 37/110 (33.64%), Postives = 67/110 (60.91%), Query Frame = 3
Query:  285 VKGVARNGSPPWREDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGG-NRCVQIRNWFDYRNHICI 611
            V G A NG      DD++G Y   + +++  RY++   +G+G+FGQV++ +D + ++ VA+K+VR  K++   A  EI +L  L + D  G +  + + ++F++RNH CI
Sbjct:  432 VIGGANNGG----YDDENGSYQLVVHDHIAYRYEVLKVIGKGSFGQVIKAFDHKYQQYVALKLVRNEKRFHRQADEEIRILDHLRRQDSDGTHNIIHMLDYFNFRNHKCI 537          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: DYR1B_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 1B OS=Mus musculus GN=Dyrk1b PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 36/97 (37.11%), Postives = 62/97 (63.92%), Query Frame = 3
Query:  327 DDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHD-KGGNRCVQIRNWFDYRNHICIV 614
            DD +  Y+   GE    RY+I S +G+G+FGQV++ +D + +E+VAIKI++  K +   A IE+ +L+ + +HD +     V ++  F +RNH+C+V
Sbjct:   93 DDDNHDYIVRSGERWLERYEIDSLIGKGSFGQVVKAYDHQTQELVAIKIIKNKKAFLNQAQIELRLLELMNQHDTEMKYYIVHLKRHFMFRNHLCLV 189          
The following BLAST results are available for this feature:
BLAST of FC923642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
POM1_SCHPO1.617e-1435.85Dual specificity protein kinase pom1 OS=Schizosacc... [more]
PRP4B_DICDI1.369e-1337.38Serine/threonine-protein kinase prpf4B OS=Dictyost... [more]
DYR1A_XENTR1.788e-1339.18Dual specificity tyrosine-phosphorylation-regulate... [more]
DYR1A_XENLA2.335e-1339.18Dual specificity tyrosine-phosphorylation-regulate... [more]
DYR1A_RAT2.335e-1339.18Dual specificity tyrosine-phosphorylation-regulate... [more]
DYR1A_MOUSE2.335e-1339.18Dual specificity tyrosine-phosphorylation-regulate... [more]
DYR1A_HUMAN2.335e-1339.18Dual specificity tyrosine-phosphorylation-regulate... [more]
MBK2_CAEEL3.983e-1333.64Dual specificity tyrosine-phosphorylation-regulate... [more]
MBK2_CAEBR3.983e-1333.64Dual specificity tyrosine-phosphorylation-regulate... [more]
DYR1B_MOUSE3.983e-1337.11Dual specificity tyrosine-phosphorylation-regulate... [more]

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Properties
Property NameValue
Genbank descriptionC31707D06EF StrClemenN Citrus clementina cDNA clone C31707D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923642 ID=FC923642; Name=FC923642; organism=Citrus clementina; type=EST; length=695bp
ATTCTTATCTTCGTTATTTTATTCGTTCGTTTCAATCGCATCAAGATCTC
GATCTCTCTCTTATTTCCTCGCCGTGAGCTGCGATCATGGAGATGGAGCG
CGTGACGGAGTTTCCTTTTTCGAATCTGGATCGGCGTCCTCGTAAGCGAG
CGCGTTTGGGCTGGGACGTGCCTCAGGTACCGAAGGCTCAGGTAGGATTA
TTTTGTGGACAAGAGGTTGGGAATGTAACAAGCTTTGCACCTCCAAGAGC
TCCCTCAGACCATGTCACTAGTTCTTCTCTATTTGTAAAGGGAGTGGCTC
GAAATGGTTCTCCCCCATGGCGTGAGGATGACAAAGATGGCCATTATATG
TTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATTCACAGCAAAAT
GGGTGAAGGAACCTTCGGTCAGGTTTTGGAATGCTGGGATCGTGAGAGGA
AAGAAATGGTAGCCATTAAAATTGTTCGTGGGATCAAGAAATATCGTGAG
GCTGCTATGATAGAAATTGAAGTACTTCAACAACTTGCAAAACATGATAA
AGGTGGCAACCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACC
ATATCTGTATTGTAAGTATATGATTGTTTTGTGATGAATTAATTTCCCCA
ATTTACACATAATTTGGGGGTTTAGACTTCTGGATGGATTCAATG
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