FC923642

Overview
NameFC923642
Unique NameFC923642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: HIPK1_MOUSE (Homeodomain-interacting protein kinase 1 OS=Mus musculus GN=Hipk1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 33/96 (34.38%), Postives = 53/96 (55.21%), Query Frame = 3
Query:  336 DGHYMFALGE---NLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIV 614
            +G Y     E   ++T+ Y++   +G GTFGQV +CW R  KE+VAIKI++    Y     IE+ +L +L+  +      V+    F ++NH C+V
Sbjct:  172 EGDYQLVQHEILCSMTNSYEVLEFLGRGTFGQVAKCWKRSTKEIVAIKILKNHPSYARQGQIEVSILSRLSSENADEYNFVRSYECFQHKNHTCLV 267          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: HIPK1_HUMAN (Homeodomain-interacting protein kinase 1 OS=Homo sapiens GN=HIPK1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 33/96 (34.38%), Postives = 53/96 (55.21%), Query Frame = 3
Query:  336 DGHYMFALGE---NLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIV 614
            +G Y     E   ++T+ Y++   +G GTFGQV +CW R  KE+VAIKI++    Y     IE+ +L +L+  +      V+    F ++NH C+V
Sbjct:  172 EGDYQLVQHEILCSMTNSYEVLEFLGRGTFGQVAKCWKRSTKEIVAIKILKNHPSYARQGQIEVSILSRLSSENADEYNFVRSYECFQHKNHTCLV 267          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: DYRK2_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 2 OS=Mus musculus GN=Dyrk2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 33/96 (34.38%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  327 DDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICI 611
            DD  G Y+    +++  RY++   +G+G+FGQV++ +D +  + VA+K+VR  K++   A  EI +L+ L K DK      + +   F +RNHIC+
Sbjct:  202 DDDQGSYVQVPHDHVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICM 297          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: DYRK2_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 2 OS=Homo sapiens GN=DYRK2 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 33/96 (34.38%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  327 DDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICI 611
            DD  G Y+    +++  RY++   +G+G+FGQV++ +D +  + VA+K+VR  K++   A  EI +L+ L K DK      + +   F +RNHIC+
Sbjct:  204 DDDQGSYVQVPHDHVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICM 299          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: PRP4_SCHPO (Serine/threonine-protein kinase prp4 OS=Schizosaccharomyces pombe GN=prp4 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 33/97 (34.02%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  327 DDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNR-CVQIRNWFDYRNHICIV 614
            DD +G+Y   L E L SRY + S +G+G F  V+   DR R +  AIKI+R  +   +  + E+ +L++L   D+ G +  +     F ++NH+C+V
Sbjct:  141 DDIEGYYKVVLMEELDSRYIVQSNLGKGMFSTVVSALDRNRNQTFAIKIIRNNEVMYKEGLKEVSILERLQAADREGKQHIIHYERHFMHKNHLCMV 237          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: HIPK2_MOUSE (Homeodomain-interacting protein kinase 2 OS=Mus musculus GN=Hipk2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 32/98 (32.65%), Postives = 53/98 (54.08%), Query Frame = 3
Query:  330 DKDGHYMFALGE---NLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIV 614
            + +G Y     E   ++T+ Y++   +G GTFGQV++CW R   E+VAIKI++    Y     IE+ +L +L+         V+    F ++NH C+V
Sbjct:  179 NSEGDYQLVQHEVLCSMTNTYEVLEFLGRGTFGQVVKCWKRGTNEIVAIKILKNHPSYARQGQIEVSILARLSTESADDYNFVRAYECFQHKNHTCLV 276          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: HIPK2_MESAU (Homeodomain-interacting protein kinase 2 OS=Mesocricetus auratus GN=Hipk2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 32/98 (32.65%), Postives = 53/98 (54.08%), Query Frame = 3
Query:  330 DKDGHYMFALGE---NLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIV 614
            + +G Y     E   ++T+ Y++   +G GTFGQV++CW R   E+VAIKI++    Y     IE+ +L +L+         V+    F ++NH C+V
Sbjct:  179 NSEGDYQLVQHEVLCSMTNTYEVLEFLGRGTFGQVVKCWKRGTNEIVAIKILKNHPSYARQGQIEVSILARLSTESADDYNFVRAYECFQHKNHTCLV 276          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: HIPK2_HUMAN (Homeodomain-interacting protein kinase 2 OS=Homo sapiens GN=HIPK2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 32/98 (32.65%), Postives = 53/98 (54.08%), Query Frame = 3
Query:  330 DKDGHYMFALGE---NLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIV 614
            + +G Y     E   ++T+ Y++   +G GTFGQV++CW R   E+VAIKI++    Y     IE+ +L +L+         V+    F ++NH C+V
Sbjct:  179 NSEGDYQLVQHEVLCSMTNTYEVLEFLGRGTFGQVVKCWKRGTNEIVAIKILKNHPSYARQGQIEVSILARLSTESADDYNFVRAYECFQHKNHTCLV 276          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: DYRK2_DROME (Dual specificity tyrosine-phosphorylation-regulated kinase 2 OS=Drosophila melanogaster GN=smi35A PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 31/96 (32.29%), Postives = 58/96 (60.42%), Query Frame = 3
Query:  327 DDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHD-KGGNRCVQIRNWFDYRNHICI 611
            DD +G+Y     +++  RY+I   +G+G+FGQV+   D +    VAIKI+R  K++   A++E+ +L +L + D  G +  + + ++  +R H+CI
Sbjct:  180 DDDNGNYKIIEHDHIAFRYEILEVIGKGSFGQVIRALDHKTNTHVAIKIIRNKKRFLNQAVVELNILDELREKDADGSHNVIHMLDYTYFRKHLCI 275          
The following BLAST results are available for this feature:
BLAST of FC923642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
HIPK1_MOUSE2.186e-1134.38Homeodomain-interacting protein kinase 1 OS=Mus mu... [more]
HIPK1_HUMAN2.186e-1134.38Homeodomain-interacting protein kinase 1 OS=Homo s... [more]
DYRK2_MOUSE4.869e-1134.38Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK2_HUMAN4.869e-1134.38Dual specificity tyrosine-phosphorylation-regulate... [more]
PRP4_SCHPO8.306e-1134.02Serine/threonine-protein kinase prp4 OS=Schizosacc... [more]
HIPK2_MOUSE8.306e-1132.65Homeodomain-interacting protein kinase 2 OS=Mus mu... [more]
HIPK2_MESAU8.306e-1132.65Homeodomain-interacting protein kinase 2 OS=Mesocr... [more]
HIPK2_HUMAN8.306e-1132.65Homeodomain-interacting protein kinase 2 OS=Homo s... [more]
DYRK2_DROME8.306e-1132.29Dual specificity tyrosine-phosphorylation-regulate... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31707D06EF StrClemenN Citrus clementina cDNA clone C31707D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923642 ID=FC923642; Name=FC923642; organism=Citrus clementina; type=EST; length=695bp
ATTCTTATCTTCGTTATTTTATTCGTTCGTTTCAATCGCATCAAGATCTC
GATCTCTCTCTTATTTCCTCGCCGTGAGCTGCGATCATGGAGATGGAGCG
CGTGACGGAGTTTCCTTTTTCGAATCTGGATCGGCGTCCTCGTAAGCGAG
CGCGTTTGGGCTGGGACGTGCCTCAGGTACCGAAGGCTCAGGTAGGATTA
TTTTGTGGACAAGAGGTTGGGAATGTAACAAGCTTTGCACCTCCAAGAGC
TCCCTCAGACCATGTCACTAGTTCTTCTCTATTTGTAAAGGGAGTGGCTC
GAAATGGTTCTCCCCCATGGCGTGAGGATGACAAAGATGGCCATTATATG
TTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATTCACAGCAAAAT
GGGTGAAGGAACCTTCGGTCAGGTTTTGGAATGCTGGGATCGTGAGAGGA
AAGAAATGGTAGCCATTAAAATTGTTCGTGGGATCAAGAAATATCGTGAG
GCTGCTATGATAGAAATTGAAGTACTTCAACAACTTGCAAAACATGATAA
AGGTGGCAACCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACC
ATATCTGTATTGTAAGTATATGATTGTTTTGTGATGAATTAATTTCCCCA
ATTTACACATAATTTGGGGGTTTAGACTTCTGGATGGATTCAATG
back to top