FC923643

Overview
NameFC923643
Unique NameFC923643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: CYP9_CAEBR (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis briggsae GN=cyn-9 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 44/152 (28.95%), Postives = 75/152 (49.34%), Query Frame = 2
Query:  152 GYIIVELFKDGSPETVDKFIDLCQ-----------KGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 568
            G I ++LF   +P+T + F  LC            + ++KG   H V+K ++IQ G   D      ++  G+     +   KH    + ++ +K  +S   + +ITTAP P  N K +VFG V+KG +VV  ++ ++ D   +P + V I N
Sbjct:   20 GRIEIKLFTSEAPKTCENFRALCTGEVGMAPNNKARLHYKGNEIHRVVKKFMIQGGDITDGDGRGGFSIYGRYFDDEKFVLKHSKPYLLSMANKGPNSNSSQFFITTAPAPHCNGKHVVFGEVIKGREVVDVLDNLEVDGKSKPIAKVRIFN 171          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPIC_HUMAN (Peptidyl-prolyl cis-trans isomerase C OS=Homo sapiens GN=PPIC PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 53/150 (35.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  152 GYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSP----KHEAFMIGTVK----SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 568
            G I++ LF    P+TV+ F+ L   +KGY +KG  FH VIK+++IQ G   D+   D     G +     T P    K + + IG V       D+ G + +IT      L+ K +VFG+V+ G  VV  IE   TD H +P ++  IIN
Sbjct:   52 GRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGG---DITTGD---GTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIIN 195          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPIC_MOUSE (Peptidyl-prolyl cis-trans isomerase C OS=Mus musculus GN=Ppic PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 54/150 (36.00%), Postives = 78/150 (52.00%), Query Frame = 2
Query:  152 GYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSP----KHEAFMIGTVK----SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 568
            G I++ LF +  P+TV+ F+ L   +KGY +KG  FH VIK+++IQ G   D  A D     G +     T P    K + + IG V       D+ G + +IT      L+ K +VFG+V+ G  VV  IE   TD H +P +D  I+N
Sbjct:   52 GRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGG---DFTARD---GTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVN 195          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPIC_BOVIN (Peptidyl-prolyl cis-trans isomerase C OS=Bos taurus GN=PPIC PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 54/150 (36.00%), Postives = 76/150 (50.67%), Query Frame = 2
Query:  152 GYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSP----KHEAFMIGTVK----SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 568
            G I++ LF    P+TV+ F+ L   +KGY +KG  FH VIK+++IQ G   D    D     G I     T P    K + + IG V       D+ G + +IT      L+ K +VFG+V+ G  VV  IE   TD H +P +D  I+N
Sbjct:   52 GRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGG---DFTRGD---GTGGISIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPFTDCSIVN 195          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 2
Query:  146 SKGYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 568
            S G ++  LF    P+TVD F+ L   +KG+ +K   FH VIK+++IQ G           +  G+         KH    ++      KD+ G + +ITT     L+ K +VFG+V++G DVV+++E   TD   +P  DV I++
Sbjct:   56 SVGRVVFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVD 201          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPIH_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizosaccharomyces pombe GN=cyp3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 51/155 (32.90%), Postives = 75/155 (48.39%), Query Frame = 2
Query:  152 GYIIVELFKDGSPETVDKFIDLC--------QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSP------KHE--AFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGII 565
            G I + LF    P+T + F   C        QK   +K  +FH +I+ ++IQ G   D  + D   S     S  RT P      KH+    +      KDS G + +ITT P   L+ K +VFG V++G D+V+EIE      + +PKS+V I+
Sbjct:   19 GRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRIIQGFMIQGG---DFVSGDGTGSATIFNS--RTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANSRPKSNVAIV 168          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPID_KLULA (Peptidyl-prolyl cis-trans isomerase D OS=Kluyveromyces lactis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 45/151 (29.80%), Postives = 77/151 (50.99%), Query Frame = 2
Query:  152 GYIIVELFKDGSPETVDKFIDLCQ--KGY----------FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEA-FMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGI 562
            G I+ EL+ D  P+T + F+ LC+   G+          +KG  FH VIK+++ Q G   +       +  G+       + KH+  F++    +  ++ G + +IT  P P L+ K +VFG V++G+ +V+ IE   TDE  +P  +V I
Sbjct:   20 GRIVFELYSDVVPKTAENFLKLCEGNSGFAKSKPDIPLSYKGSIFHRVIKSFMCQFGDFTNFNGTGGESIYGEKFEDENFTLKHDKPFLLSMANAGANTNGSQCFITCVPTPHLDGKHVVFGEVIQGKRLVRTIENNATDEADKPAKEVKI 170          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPID_CANGA (Peptidyl-prolyl cis-trans isomerase D OS=Candida glabrata GN=CPR6 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 46/155 (29.68%), Postives = 79/155 (50.97%), Query Frame = 2
Query:  143 TSKGYIIVELFKDGSPETVDKFIDLCQKGY------------FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEA-FMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHY-QPKSDVGI 562
            T KG I+ EL+KD  P+T + F+ LC+               +KG  FH VIK+++IQ G   +       +  G+         KH+  F++    +  ++ G + +IT  P P L+ K +VFG V++G+ +V+ IE+  T++   +P  DV +
Sbjct:   15 TPKGRIVFELYKDVVPKTAENFLKLCEGKSGMAKSKPDVPLSYKGSIFHRVIKDFMIQFGDFTNFDGTGGESIYGEKFEDENFEIKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIEGKRLVRLIEKQQTEDGTDKPMHDVKV 169          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 49/152 (32.24%), Postives = 79/152 (51.97%), Query Frame = 2
Query:  146 SKGYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKS---------KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGII 565
            S G I++ L+    PET + F  L   +KG+ ++G +FH VIK+++IQ G   D    D    +    ++     K E F +   K+         KD+ G + +ITTA  P L+ K +VFG V++G D+V +I+ V    + +P  DV I+
Sbjct:   46 SLGRIVLGLYGKTVPETAENFRALATGEKGFGYEGSNFHRVIKDFMIQGG---DFTRGDGTGGKSIYGAKF----KDENFKLRHTKTGLLSMANAGKDTNGSQFFITTAVTPWLDGKHVVFGEVLEGYDIVDKIQNVPKGRNDRPLKDVKIV 190          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 54/154 (35.06%), Postives = 76/154 (49.35%), Query Frame = 2
Query:  149 KGYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSR---GKIRSQLRTSPKHEAF-MIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGI 562
            +G I++EL+ D  P+T + F  LC  +KG         ++KG  FH VIK ++IQ G   D++A D        G          KHE   M+    S  ++ G + +ITT     L+ K +VFGRV KG  VV+ IE V  +E   P  DV I
Sbjct:   17 EGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIKGFMIQGG---DISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVI 167          
The following BLAST results are available for this feature:
BLAST of FC923643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CYP9_CAEBR7.576e-1228.95Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPIC_HUMAN9.894e-1235.33Peptidyl-prolyl cis-trans isomerase C OS=Homo sapi... [more]
PPIC_MOUSE1.292e-1136.00Peptidyl-prolyl cis-trans isomerase C OS=Mus muscu... [more]
PPIC_BOVIN1.292e-1136.00Peptidyl-prolyl cis-trans isomerase C OS=Bos tauru... [more]
PPIB_MOUSE1.292e-1132.19Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
PPIH_SCHPO1.688e-1132.90Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizo... [more]
PPID_KLULA2.204e-1129.80Peptidyl-prolyl cis-trans isomerase D OS=Kluyverom... [more]
PPID_CANGA2.204e-1129.68Peptidyl-prolyl cis-trans isomerase D OS=Candida g... [more]
PPIB_EMENI2.204e-1132.24Peptidyl-prolyl cis-trans isomerase B OS=Emericell... [more]
CYP40_ARATH2.204e-1135.06Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionC31707D08EF StrClemenN Citrus clementina cDNA clone C31707D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923643 ID=FC923643; Name=FC923643; organism=Citrus clementina; type=EST; length=697bp
GTTGTGCTTAGTTGTCACATATAGACATTGGTCGCATTCACCAAGGTCAA
ATGAACAAATAGGGAATGAATCGTCAACCGCTGAGGATGATGCCTATGCG
GTTTCAAAGAAGTTTGATCTTCCTGGCCATGCTGTTTTAAATACATCTAA
AGGTTATATAATAGTGGAACTCTTCAAAGATGGTTCACCTGAAACCGTGG
ATAAATTTATTGACTTGTGTCAAAAGGGGTACTTCAAAGGTATGTCTTTC
CATCATGTGATAAAAAACTATGTCATTCAAGCTGGGCATTCCAAGGATCT
TGCAGCTGCTGATGAATGGACATCAAGAGGGAAGATCCGCAGTCAGCTGA
GGACCAGTCCGAAGCATGAGGCGTTTATGATTGGAACTGTAAAATCTAAA
GACAGCAAAGGATTTGAGCTATACATTACAACTGCACCAATACCAGATTT
AAATGATAAGCTTATTGTGTTTGGACGAGTAGTGAAGGGTGAGGATGTGG
TGCAGGAAATTGAAGAGGTGGATACAGATGAGCACTATCAGCCTAAGTCA
GATGTAGGGATCATCAATGTGACACTAAAGCATGCGATATGAGGATGTAT
GCTAAGCTACCGAAAAGATTTTACACCTAGCCAAGTTTCTTGTTGTGCTA
TTGATTTTCGTATTAATCTTGTATTGCTGCTGCTAGAACGCTTGGTT
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