FC923643

Overview
NameFC923643
Unique NameFC923643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPIL2_ARATH (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arabidopsis thaliana GN=PUB49 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 43/161 (26.71%), Postives = 70/161 (43.48%), Query Frame = 2
Query:  101 VSKKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADE--WTSRGKIRSQLRTSPKHEAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 577
            V K     G+    T+ G + +EL  D +P   + FI LC++GY+ G++FH  I+N++IQ G         E  W    K     +        +        + G + ++       LN K  VFG VV G   +  +E V  DE  +P  ++ II  ++
Sbjct:  336 VEKNPKKKGYVQFQTTHGDLNIELHCDIAPRACENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGKGGESIWGKPFKDEPNSKLLHSGRGVVSMANSGPHTNGSQFFVLYKSATHLNYKHTVFGGVVGGLATLAAMENVPVDESDRPLEEIKIIEASV 496          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 46/142 (32.39%), Postives = 73/142 (51.41%), Query Frame = 2
Query:  152 GYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGI 562
            G +++ LF    P+TVD F+ L   +KG+ +K   FH VIK+++IQ G           +  G+         KH    ++      KD+ G + +ITT     L+ K +VFG+V++G DVV+++E   TD   +P  DV I
Sbjct:   58 GRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVESTKTDGRDKPLKDVTI 199          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: CYPD_YEAST (Peptidyl-prolyl cis-trans isomerase D OS=Saccharomyces cerevisiae GN=CPR5 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 53/173 (30.64%), Postives = 80/173 (46.24%), Query Frame = 2
Query:   68 ESSTAEDDAYAVSKKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLC-----QKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE--AFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGII 565
            +  TAED        FD+  H   +   G I++ L+   +P+TV+ F  L      + GY   + FH VI N++IQ G     +     +  G          KH+    +    + K++ G + +ITT P P L+ K +VFG V+ G DVV  IE V TD    P  +V I+
Sbjct:   23 KEDTAEDPEITHKVYFDI-NHG--DKQIGRIVMGLYGLTTPQTVENFYQLTISRDPKMGYLNSI-FHRVIPNFMIQGGDFTHRSGIGGKSIFGNTFKDENFDVKHDKPGRLSMANRGKNTNGSQFFITTVPCPWLDGKHVVFGEVLDGMDVVHYIENVKTDSRNMPVKEVIIV 191          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPIL3_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gibberella zeae GN=CYP10 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 46/156 (29.49%), Postives = 78/156 (50.00%), Query Frame = 2
Query:  137 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAG-----HSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFGRVV--KGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 577
            L+TS G I VE++ +  P+T + F+ LC  GY+    FH VI  ++ Q G     +  +          G    ++R + +H A  + ++ +K   + G + +IT    P L+    VFGRV+  +G   + ++E V+ D   +PK  V I NVT+
Sbjct:    5 LHTSHGDIKVEIYCESVPKTAENFLALCGSGYYDKSPFHRVIPKFMAQTGAPATPNPPENPKGGRSIWGGAFEDEIRPALRHGARGVLSMANKGPGTNGSQFFITFDKAPHLDGLNTVFGRVIGDEGLATLAKMEAVEVDRKNRPKEPVRIENVTI 160          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 44/139 (31.65%), Postives = 69/139 (49.64%), Query Frame = 2
Query:  152 GYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD 529
            G I++ELF D  P+T + F  LC  +KG         +FKG  FH +IK ++IQ G   +       +  G+         KH  E  +       ++ G + +ITT P P L+ K +VFG+V+KG  V + +E V+ +
Sbjct:   30 GRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVN 168          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPID_HUMAN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Homo sapiens GN=PPID PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 44/137 (32.12%), Postives = 69/137 (50.36%), Query Frame = 2
Query:  152 GYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVD 523
            G I++ELF D  P+T + F  LC  +KG         +FKG  FH +IK ++IQ G   +       +  G+         KH  E  +      +++ G + +ITT P P L+ K +VFG+V+KG  V + +E V+
Sbjct:   30 GRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVE 166          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 44/139 (31.65%), Postives = 69/139 (49.64%), Query Frame = 2
Query:  152 GYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD 529
            G I++ELF D  P+T + F  LC  +KG         +FKG  FH +IK ++IQ G   +       +  G+         KH  E  +       ++ G + +ITT P P L+ K +VFG+V+KG  V + +E V+ +
Sbjct:   30 GRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVN 168          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 44/137 (32.12%), Postives = 68/137 (49.64%), Query Frame = 2
Query:  152 GYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVD 523
            G I++ELF D  P+T + F  LC  +KG         +FKG  FH +IK ++IQ G   +       +  G+         KH  E  +       ++ G + +ITT P P L+ K +VFG+V+KG  V + +E V+
Sbjct:   30 GRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVE 166          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPIB_RAT (Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 46/144 (31.94%), Postives = 73/144 (50.69%), Query Frame = 2
Query:  152 GYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 568
            G +   LF    P+TVD F+ L   +KG+ +K   FH VIK+++IQ G           +  G+         KH    ++      KD+ G + +ITT     L+ K +VFG+V++G DVV+++E   TD   +P  DV I++
Sbjct:   58 GRVTFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVIIVD 201          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 47/149 (31.54%), Postives = 76/149 (51.01%), Query Frame = 2
Query:  146 SKGYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKS--KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 577
            S G I++ L+    P+T + F  L   + GY +KG +FH VIK ++IQ G   +       +  G   +      +H    + ++ +  +D+ G + +ITT   P L+ K +VFGRV++G DVV +IE   T    +P  DV I +  L
Sbjct:   46 SLGRIVLGLYGKTVPKTAENFKQLATGENGYGYKGSTFHRVIKKFMIQGGDFTNHDGTGGKSIYGNRFADENFKLRHSTPGLLSMANAGRDTNGSQFFITTVVTPWLDGKHVVFGRVLEGMDVVTKIENTPTGSRSKPSVDVVIADCGL 194          
The following BLAST results are available for this feature:
BLAST of FC923643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PPIL2_ARATH2.879e-1126.71Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arab... [more]
PPIB_BOVIN2.879e-1132.39Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
CYPD_YEAST2.879e-1130.64Peptidyl-prolyl cis-trans isomerase D OS=Saccharom... [more]
PPIL3_GIBZE3.760e-1129.49Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gibb... [more]
PPID_MOUSE3.760e-1131.6540 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPID_HUMAN3.760e-1132.1240 kDa peptidyl-prolyl cis-trans isomerase OS=Homo... [more]
PPID_RAT4.910e-1131.6540 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
PPID_BOVIN4.910e-1132.1240 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]
PPIB_RAT6.413e-1131.94Peptidyl-prolyl cis-trans isomerase B OS=Rattus no... [more]
PPIB1_RHIOR6.413e-1131.54Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]

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Properties
Property NameValue
Genbank descriptionC31707D08EF StrClemenN Citrus clementina cDNA clone C31707D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923643 ID=FC923643; Name=FC923643; organism=Citrus clementina; type=EST; length=697bp
GTTGTGCTTAGTTGTCACATATAGACATTGGTCGCATTCACCAAGGTCAA
ATGAACAAATAGGGAATGAATCGTCAACCGCTGAGGATGATGCCTATGCG
GTTTCAAAGAAGTTTGATCTTCCTGGCCATGCTGTTTTAAATACATCTAA
AGGTTATATAATAGTGGAACTCTTCAAAGATGGTTCACCTGAAACCGTGG
ATAAATTTATTGACTTGTGTCAAAAGGGGTACTTCAAAGGTATGTCTTTC
CATCATGTGATAAAAAACTATGTCATTCAAGCTGGGCATTCCAAGGATCT
TGCAGCTGCTGATGAATGGACATCAAGAGGGAAGATCCGCAGTCAGCTGA
GGACCAGTCCGAAGCATGAGGCGTTTATGATTGGAACTGTAAAATCTAAA
GACAGCAAAGGATTTGAGCTATACATTACAACTGCACCAATACCAGATTT
AAATGATAAGCTTATTGTGTTTGGACGAGTAGTGAAGGGTGAGGATGTGG
TGCAGGAAATTGAAGAGGTGGATACAGATGAGCACTATCAGCCTAAGTCA
GATGTAGGGATCATCAATGTGACACTAAAGCATGCGATATGAGGATGTAT
GCTAAGCTACCGAAAAGATTTTACACCTAGCCAAGTTTCTTGTTGTGCTA
TTGATTTTCGTATTAATCTTGTATTGCTGCTGCTAGAACGCTTGGTT
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