FC923644

Overview
NameFC923644
Unique NameFC923644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.052e-40
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:  298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            V     WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   33 VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 90

HSP 2 Score: 82.0333 bits (201), Expect = 1.052e-40
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:   89 VIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 139
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.053e-40
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:  313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVI
Sbjct:   20 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVI 72

HSP 2 Score: 82.8037 bits (203), Expect = 1.053e-40
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:   71 VIHCRWAMLGALGCVFPEILSK-NGVTFGEAVWFKAGSQIFSEGGLDYLGNP 121
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.370e-40
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:  316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   48 WYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99

HSP 2 Score: 81.6481 bits (200), Expect = 1.370e-40
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:   98 VIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 148
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.370e-40
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:  313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            +WYG DR K+LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   47 IWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99

HSP 2 Score: 85.1149 bits (209), Expect = 1.370e-40
Identity = 42/52 (80.77%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGCI PE+L K   V F E VWFKAGAQIFSEGGLDYLGNP
Sbjct:   98 VIHSRWAMLGALGCIFPELLSK-NGVQFGEAVWFKAGAQIFSEGGLDYLGNP 148
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.370e-40
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:  316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   46 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 97

HSP 2 Score: 82.0333 bits (201), Expect = 1.370e-40
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:   96 VIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 146
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.784e-40
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:  298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            V     WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   45 VSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102

HSP 2 Score: 80.4925 bits (197), Expect = 1.784e-40
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:  101 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 151
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.784e-40
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:  316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVI
Sbjct:   52 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 103

HSP 2 Score: 82.0333 bits (201), Expect = 1.784e-40
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:  102 VIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 152
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.784e-40
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:  316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVI
Sbjct:   53 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 104

HSP 2 Score: 82.0333 bits (201), Expect = 1.784e-40
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:  103 VIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 153
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.785e-40
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:  298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            V     WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   44 VSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101

HSP 2 Score: 80.4925 bits (197), Expect = 1.785e-40
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:  100 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 150
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.785e-40
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:  298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            V  +  WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   43 VASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 100

HSP 2 Score: 80.4925 bits (197), Expect = 1.785e-40
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:   99 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
The following BLAST results are available for this feature:
BLAST of FC923644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB21_CUCSA1.052e-4081.03Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_SOLLC1.053e-4088.68Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB23_APIGR1.370e-4088.46Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_LEMGI1.370e-4084.91Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_MAIZE1.370e-4088.46Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB24_TOBAC1.784e-4081.03Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB28_PEA1.784e-4086.54Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PEA1.784e-4086.54Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB25_NICPL1.785e-4081.03Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_TOBAC1.785e-4081.03Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31707D09EF StrClemenN Citrus clementina cDNA clone C31707D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923644 ID=FC923644; Name=FC923644; organism=Citrus clementina; type=EST; length=714bp
GATTGTCTTCAGACACATATTAACATCACAGTTCCAACCGACACAACATC
CATAATACCAACTCTCAGGACAATGGCATCAATAATGGCGGCTGCTACTG
CTAGCTCTAGCACTTCTCTTAGGGCAACCCCATTTCTTGGCCAGAGTAGG
ACAACTGCTAACGCTCTAAAAGATGTTGTTCCGATGGGGAATGCCAAGTA
CACAATGGTAATAAGTTGGTAACCTTAACCTACACCTTCAGCCTTTTTGT
CTCTCTTTGTCTCTGTGTTTAGGGAAATTCATTGAAGATATTGTTGTGTT
CAGGGAAATGAACTGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACC
CTTTTCAGCACAGACTCCATCATACTTGACTGGAGAGTTTCCAGGTGACT
ATGGATGGGACACTGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAGG
AACAGGGCTCTTGAGGTGATATTCTTTCCTTCTTATTCTTGCCCTCTGTC
GGCTGGTAATGTGGTTACAGCAACAAAGATATTGATACTACTATTTCAAT
TTGTAGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCACTAGGCTGCAT
CACCCCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTTCAAGGAACCGG
TTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCCTTGACTAC
TTGGGAAACCCCAC
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