FC923644

Overview
NameFC923644
Unique NameFC923644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.785e-40
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:  298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            V     WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   44 VSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101

HSP 2 Score: 80.4925 bits (197), Expect = 1.785e-40
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:  100 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 150
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.785e-40
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:  313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            +WYGPDR KYLGPFS Q PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   48 IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 100

HSP 2 Score: 82.8037 bits (203), Expect = 1.785e-40
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:   99 VIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.793e-40
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:  313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   47 IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99

HSP 2 Score: 80.1073 bits (196), Expect = 1.793e-40
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIF EGGLDYLGNP
Sbjct:   98 VIHCRWAMLGALGCVFPELLAK-NGVKFGEAVWFKAGSQIFQEGGLDYLGNP 148
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.325e-40
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:  316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   51 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102

HSP 2 Score: 80.4925 bits (197), Expect = 2.325e-40
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:  101 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 151
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.325e-40
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:  298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            V     WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   45 VSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102

HSP 2 Score: 80.4925 bits (197), Expect = 2.325e-40
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:  101 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 151
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.325e-40
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:  316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   51 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102

HSP 2 Score: 80.4925 bits (197), Expect = 2.325e-40
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:  101 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 151
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.325e-40
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:  316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   49 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 100

HSP 2 Score: 80.4925 bits (197), Expect = 2.325e-40
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:   99 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.948e-40
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:  316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   48 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99

HSP 2 Score: 79.7221 bits (195), Expect = 3.948e-40
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIHGRWAMLGALGC+ PE+L +   V F E VWFK G+QIFSEGGL YLGNP
Sbjct:   98 VIHGRWAMLGALGCVFPELLAR-NGVKFGEAVWFKKGSQIFSEGGLQYLGNP 148
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.146e-40
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:  316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            WYGPDR K+LGPFS  TP+YLTGEFPGDYGWDTAGLSADPE F + R LEVI
Sbjct:   39 WYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVI 90

HSP 2 Score: 88.1965 bits (217), Expect = 5.146e-40
Identity = 41/57 (71.93%), Postives = 46/57 (80.70%), Query Frame = 2 
Query:  542 YFNL*VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            Y  L VIH RWA+LGALG +TPE+L  +  V F EPVWFKAGAQIFSEGGLDYLG+P
Sbjct:   84 YRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSP 140
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.701e-40
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:  298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            V     WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   44 VSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101

HSP 2 Score: 78.9518 bits (193), Expect = 6.701e-40
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+  +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:  100 VIHCRWAMLGALGCVFPELFAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 150
The following BLAST results are available for this feature:
BLAST of FC923644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB21_TOBAC1.785e-4081.03Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_GOSHI1.785e-4086.79Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_SILPR1.793e-4088.68Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2G_SOLLC2.325e-4088.46Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB27_TOBAC2.325e-4081.03Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_TOBAC2.325e-4088.46Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB2B_SOLLC2.325e-4088.46Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB22_HORVU3.948e-4088.46Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_CHLMO5.146e-4080.77Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_PETSP6.701e-4081.03Chlorophyll a-b binding protein 25, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31707D09EF StrClemenN Citrus clementina cDNA clone C31707D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923644 ID=FC923644; Name=FC923644; organism=Citrus clementina; type=EST; length=714bp
GATTGTCTTCAGACACATATTAACATCACAGTTCCAACCGACACAACATC
CATAATACCAACTCTCAGGACAATGGCATCAATAATGGCGGCTGCTACTG
CTAGCTCTAGCACTTCTCTTAGGGCAACCCCATTTCTTGGCCAGAGTAGG
ACAACTGCTAACGCTCTAAAAGATGTTGTTCCGATGGGGAATGCCAAGTA
CACAATGGTAATAAGTTGGTAACCTTAACCTACACCTTCAGCCTTTTTGT
CTCTCTTTGTCTCTGTGTTTAGGGAAATTCATTGAAGATATTGTTGTGTT
CAGGGAAATGAACTGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACC
CTTTTCAGCACAGACTCCATCATACTTGACTGGAGAGTTTCCAGGTGACT
ATGGATGGGACACTGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAGG
AACAGGGCTCTTGAGGTGATATTCTTTCCTTCTTATTCTTGCCCTCTGTC
GGCTGGTAATGTGGTTACAGCAACAAAGATATTGATACTACTATTTCAAT
TTGTAGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCACTAGGCTGCAT
CACCCCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTTCAAGGAACCGG
TTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCCTTGACTAC
TTGGGAAACCCCAC
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