FC923644
|
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 8.730e-40 Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1
Query: 316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
WYG DRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVI
Sbjct: 50 WYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVI 101 HSP 2 Score: 80.4925 bits (197), Expect = 8.730e-40 Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFS+GGLDYLGNP
Sbjct: 100 VIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNP 150
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 8.730e-40 Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1
Query: 316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
WYG DRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVI
Sbjct: 50 WYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVI 101 HSP 2 Score: 80.4925 bits (197), Expect = 8.730e-40 Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFS+GGLDYLGNP
Sbjct: 100 VIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNP 150
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.481e-39 Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 1
Query: 316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct: 62 WYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 113 HSP 2 Score: 80.8777 bits (198), Expect = 1.481e-39 Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLG+P
Sbjct: 112 VIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSP 162
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.482e-39 Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 1
Query: 316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVI
Sbjct: 49 WYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVI 100 HSP 2 Score: 80.4925 bits (197), Expect = 1.482e-39 Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct: 99 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.930e-39 Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 1
Query: 316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct: 62 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 113 HSP 2 Score: 80.8777 bits (198), Expect = 1.930e-39 Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLG+P
Sbjct: 112 VIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSP 162
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.930e-39 Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 1
Query: 316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct: 58 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVI 109 HSP 2 Score: 81.6481 bits (200), Expect = 1.930e-39 Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP
Sbjct: 108 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNP 158
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.931e-39 Identity = 46/58 (79.31%), Postives = 48/58 (82.76%), Query Frame = 1
Query: 298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
V WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTA LSADPE FA+NR LEVI
Sbjct: 45 VSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVI 102 HSP 2 Score: 80.4925 bits (197), Expect = 1.931e-39 Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct: 101 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 151
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.936e-39 Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1
Query: 316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
W+GPD VKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct: 12 WHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 63 HSP 2 Score: 82.0333 bits (201), Expect = 1.936e-39 Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct: 62 VIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 112
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.516e-39 Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 1
Query: 316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
WYGPDRVKYLGPFS + PSYLTGEFP DYGWDTAGLSADPE FA+NR LEVI
Sbjct: 51 WYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVI 102 HSP 2 Score: 79.7221 bits (195), Expect = 2.516e-39 Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC+ PE+ + + F E VWFKAGAQIFSEGGLDYLGNP
Sbjct: 101 VIHCRWAMLGALGCVFPELFAR-NGIKFGEAVWFKAGAQIFSEGGLDYLGNP 151
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 2.516e-39 Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1
Query: 313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
+WYG DR K+LGPFS +TPSYL GEF GDYGWDTAGLS+DPE FARNR LEVI
Sbjct: 51 IWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVI 103 HSP 2 Score: 86.6557 bits (213), Expect = 2.516e-39 Identity = 42/52 (80.77%), Postives = 44/52 (84.62%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC+TPE+L K V F E VWFKAGAQIFSEGGLDYLGNP
Sbjct: 102 VIHARWAMLGALGCLTPELLAK-SGVKFGEAVWFKAGAQIFSEGGLDYLGNP 152 The following BLAST results are available for this feature:
BLAST of FC923644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923644 ID=FC923644; Name=FC923644; organism=Citrus clementina; type=EST; length=714bpback to top |