FC923644

Overview
NameFC923644
Unique NameFC923644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.277e-39
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:  298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            V     WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   45 VSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102

HSP 2 Score: 76.6406 bits (187), Expect = 3.277e-39
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+  +   V F E VW KAG+QIFSEGGLDYLGNP
Sbjct:  101 VIHCRWAMLGALGCVFPELFAR-NGVKFGEAVWLKAGSQIFSEGGLDYLGNP 151
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.277e-39
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:  298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            V  +  WYGP+RVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   45 VSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102

HSP 2 Score: 77.7962 bits (190), Expect = 3.277e-39
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFK G+QIFS+GGLDYLGNP
Sbjct:  101 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKGGSQIFSQGGLDYLGNP 151
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.277e-39
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:  298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            V     WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   23 VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 80

HSP 2 Score: 76.6406 bits (187), Expect = 4.277e-39
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGN 709
            VIH RWAMLGALGC+ PE+L +   V F E  WFKAG+QIFSEGGLDYLGN
Sbjct:   79 VIHSRWAMLGALGCVFPELLAR-NGVKFGEASWFKAGSQIFSEGGLDYLGN 128
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.564e-39
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:  316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            WYGPDRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   49 WYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 100

HSP 2 Score: 81.6481 bits (200), Expect = 5.564e-39
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:   99 VIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.231e-38
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:  316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            WYGPDRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   49 WYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 100

HSP 2 Score: 80.4925 bits (197), Expect = 1.231e-38
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:   99 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.603e-38
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:  313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            +WYGPDR KYLGPFS  TPSYLTGEFPGDYGWDTA +SADPE FA+NR LEVI
Sbjct:   49 IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVI 101

HSP 2 Score: 79.7221 bits (195), Expect = 1.603e-38
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L K   + F E VWFKAGAQIFSEGGLDY GNP
Sbjct:  100 VIHCRWAMLGALGCVFPELLAK-NGLKFGEAVWFKAGAQIFSEGGLDYAGNP 150
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.089e-38
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:  313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            +WYG DR  YLGPFS   PSYL+GEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   48 IWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVI 100

HSP 2 Score: 84.3445 bits (207), Expect = 2.089e-38
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+TPE+L K   V F E VWFKAG+QIF+EGGLDYLGNP
Sbjct:   99 VIHSRWAMLGALGCVTPELLAK-NGVKFGEAVWFKAGSQIFAEGGLDYLGNP 149
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.721e-38
Identity = 46/58 (79.31%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:  298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            V     WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADP  FA+NR LEVI
Sbjct:   44 VSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVI 101

HSP 2 Score: 75.8702 bits (185), Expect = 2.721e-38
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RW MLGALGC+ PE+  +   V F E VWFKAG+QIF EGGLDYLGNP
Sbjct:  100 VIHCRWTMLGALGCVFPELFAR-NGVKFGEAVWFKAGSQIFKEGGLDYLGNP 150
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.618e-38
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:  316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            WYG DRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   49 WYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 100

HSP 2 Score: 81.6481 bits (200), Expect = 4.618e-38
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:   99 VIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
[Close]
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.619e-38
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:  316 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
            WYG DRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   45 WYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 96

HSP 2 Score: 81.6481 bits (200), Expect = 4.619e-38
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct:   95 VIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 145
The following BLAST results are available for this feature:
BLAST of FC923644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB22_PETSP3.277e-3981.03Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_NICPL3.277e-3979.31Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_SOYBN4.277e-3981.03Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB29_MAIZE5.564e-3984.62Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_MAIZE1.231e-3884.62Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH1.603e-3883.02Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_POLMU2.089e-3879.25Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_PETSP2.721e-3879.31Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_ORYSJ4.618e-3882.69Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_ORYSJ4.619e-3882.69Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC31707D09EF StrClemenN Citrus clementina cDNA clone C31707D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923644 ID=FC923644; Name=FC923644; organism=Citrus clementina; type=EST; length=714bp
GATTGTCTTCAGACACATATTAACATCACAGTTCCAACCGACACAACATC
CATAATACCAACTCTCAGGACAATGGCATCAATAATGGCGGCTGCTACTG
CTAGCTCTAGCACTTCTCTTAGGGCAACCCCATTTCTTGGCCAGAGTAGG
ACAACTGCTAACGCTCTAAAAGATGTTGTTCCGATGGGGAATGCCAAGTA
CACAATGGTAATAAGTTGGTAACCTTAACCTACACCTTCAGCCTTTTTGT
CTCTCTTTGTCTCTGTGTTTAGGGAAATTCATTGAAGATATTGTTGTGTT
CAGGGAAATGAACTGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACC
CTTTTCAGCACAGACTCCATCATACTTGACTGGAGAGTTTCCAGGTGACT
ATGGATGGGACACTGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAGG
AACAGGGCTCTTGAGGTGATATTCTTTCCTTCTTATTCTTGCCCTCTGTC
GGCTGGTAATGTGGTTACAGCAACAAAGATATTGATACTACTATTTCAAT
TTGTAGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCACTAGGCTGCAT
CACCCCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTTCAAGGAACCGG
TTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCCTTGACTAC
TTGGGAAACCCCAC
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